Clone Sequence Records
BS04033.3prime Sequence
894 bp (829 high quality bases) assembled on 2005-12-01
> BS04033.3prime
ATGGTCTAGAAAGCTTTCATTGGGGCGATGGATATGCGCCATGCTTGTCC
TTGATCACCCAGAAGGAGTCGACAATGGCGCCGTTCTGGTCATCGGACAC
CTGCTCGAAGTGAAGATGCGTGCCATTATGTGCCTTCAAGCGGGTGTATC
CGTAATCATTGCTATGGTAGGCATTCCAGATGGGCAAATCGTTGGAGAAG
GGCTCGCGCTCCTCCTTGCAGCCGGCGGAACCCGTGATGATCTGGATGGG
CGCCTTGGGATTAGTGTATGGCGCCTCGGCACTGCCATTGTACACCTTGT
AGTCGTAGATTGGCCACAGGCGAGTGTAGAAGTGTTCATGCGCAAAGATC
TCCACGTCGACGCCGTGCTTGTAGAACAGATCCTCCAGGCCGAACCACTT
GAGCATGGGCAGACCCTGGCGAATGTACGTCTCCAGTTGGCTATTGCAAT
CGTACTCCTTGTCGTCGCTGCAGTACATCGGTCGATGACCGTAGGTGATG
ATCCACGGACGTTTGGCCCGATTCTCGGGCAGATTGGCCTCGGCCAGGTC
ACGTTCCAGCCACTCGAATTGCTTGGTCAGCAACTTGAAGCCATAGCTGA
GGAAGTAGTAGACCTCCGTGGAGAAGGAGACAAAGTGCACGGGTCCCAAG
TTGAAGCTGTACCACAAGCTGTCCGTTTCGCCGGGCATATTGAAGCGGGC
GCGATAGTTGGAGAAGTTGTACTTCTCCTCGTGATTGCCCGGACAAACCA
TGTAGGGCACATAGGCAGCCACCGACTCGATCTGGCGCATGAATGCATCA
CCCACGGCAGCGTTGGAGGTGTCCATGTCGTAGGCAAAGTCACCCACATG
GATGATGGCATCGTACATGCCTCGCTCAGTGTCCTGCTGTAGTC
BS04033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-PC | 1353 | CG1637-RC | 476..1353 | 894..17 | 4390 | 100 | Minus |
| CG1637-PB | 1377 | CG1637-RB | 529..576 | 871..824 | 215 | 97.9 | Minus |
| CG1637-PB | 1377 | CG1637-RB | 661..716 | 739..684 | 180 | 92.8 | Minus |
| CG1637-PA | 1362 | CG1637-RA | 501..546 | 866..821 | 155 | 93.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RC | 1708 | CG1637-RC | 721..1598 | 894..17 | 4390 | 100 | Minus |
| CG1637-RD | 2199 | CG1637-RD | 759..1573 | 889..75 | 910 | 74.8 | Minus |
| CG1637-RB | 2196 | CG1637-RB | 756..1570 | 889..75 | 910 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10870903..10871465 | 157..719 | 2815 | 100 | Plus |
| X | 23542271 | X | 10871529..10871703 | 720..894 | 875 | 100 | Plus |
| X | 23542271 | X | 10870704..10870844 | 17..157 | 705 | 100 | Plus |
| X | 23542271 | X | 10874913..10875170 | 462..719 | 465 | 78.7 | Plus |
| X | 23542271 | X | 10875242..10875410 | 721..889 | 440 | 84 | Plus |
| X | 23542271 | X | 10872378..10872477 | 39..138 | 230 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:41:38 has no hits.
BS04033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:22 Download gff for
BS04033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-PC | 476..1353 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:46 Download gff for
BS04033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-PC | 476..1353 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:18 Download gff for
BS04033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 721..1602 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:00 Download gff for
BS04033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 721..1602 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:00 Download gff for
BS04033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10870700..10870844 | 11..157 | 97 | <- | Plus |
| X | 10870904..10871465 | 158..719 | 100 | <- | Plus |
| X | 10871529..10871703 | 720..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:18 Download gff for
BS04033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10764733..10764877 | 11..157 | 97 | <- | Plus |
| arm_X | 10764937..10765498 | 158..719 | 100 | <- | Plus |
| arm_X | 10765562..10765736 | 720..894 | 100 | | Plus |
BS04033.5prime Sequence
885 bp (819 high quality bases) assembled on 2005-11-29
> BS04033.5prime
GAAGTTATCAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGC
TGCTCCTGCTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGAC
CAGGACGTCGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTT
TGGAGACAATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCC
CCAACGCCTCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCG
ATAATGGTGAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGC
TCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACA
CGCGGTACGAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTC
AATTTCAAGACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCAT
TTTCGGTGACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGC
AGGACACTGAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTT
GCCTACGACATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCG
CCAGATCGAGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCA
ATCACGAGGAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATG
CCCGGCGAAACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCA
CTTTGTCTCCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCA
AGTTGCTGACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGGCGAGGCC
AATCTGCCCGAGAAATCGGCCAAACGTCCGTGGAT
BS04033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-PC | 1353 | CG1637-RC | 1..848 | 17..864 | 4215 | 99.8 | Plus |
| CG1637-PB | 1377 | CG1637-RB | 1..140 | 17..156 | 700 | 100 | Plus |
| CG1637-PA | 1362 | CG1637-RA | 1..140 | 17..156 | 700 | 100 | Plus |
| CG1637-PB | 1377 | CG1637-RB | 529..576 | 515..562 | 215 | 97.9 | Plus |
| CG1637-PB | 1377 | CG1637-RB | 661..716 | 647..702 | 180 | 92.8 | Plus |
| CG1637-PA | 1362 | CG1637-RA | 501..546 | 520..565 | 155 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RC | 1708 | CG1637-RC | 246..1114 | 17..885 | 4285 | 99.7 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 693..1147 | 431..885 | 850 | 79.6 | Plus |
| CG1637-RB | 2196 | CG1637-RB | 690..1144 | 431..885 | 850 | 79.6 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 246..384 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10871529..10872045 | 666..150 | 2570 | 99.8 | Minus |
| X | 23542271 | X | 10871247..10871465 | 885..667 | 1035 | 98.2 | Minus |
| X | 23542271 | X | 10877415..10877553 | 155..17 | 695 | 100 | Minus |
| X | 23542271 | X | 10875242..10875476 | 665..431 | 560 | 82.6 | Minus |
| X | 23542271 | X | 10874952..10875170 | 885..667 | 285 | 75.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:47:59 has no hits.
BS04033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:23 Download gff for
BS04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-PC | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:47 Download gff for
BS04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-PC | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:16 Download gff for
BS04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 240..1114 | 11..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:29 Download gff for
BS04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 240..1114 | 11..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:29 Download gff for
BS04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10871247..10871465 | 667..885 | 98 | <- | Minus |
| X | 10871529..10872039 | 156..666 | 100 | <- | Minus |
| X | 10877415..10877559 | 11..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:16 Download gff for
BS04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10765280..10765498 | 667..885 | 98 | <- | Minus |
| arm_X | 10765562..10766072 | 156..666 | 100 | <- | Minus |
| arm_X | 10771448..10771592 | 11..155 | 97 | | Minus |
BS04033.complete Sequence
1385 bp (1385 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634836
> BS04033.complete
GAAGTTATCAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGC
TGCTCCTGCTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGAC
CAGGACGTCGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTT
TGGAGACAATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCC
CCAACGCCTCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCG
ATAATGGTGAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGC
TCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACA
CGCGGTACGAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTC
AATTTCAAGACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCAT
TTTCGGTGACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGC
AGGACACTGAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTT
GCCTACGACATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCG
CCAGATCGAGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCA
ATCACGAGGAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATG
CCCGGCGAAACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCA
CTTTGTCTCCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCA
AGTTGCTGACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGCCGAGGCC
AATCTGCCCGAGAATCGGGCCAAACGTCCGTGGATCATCACCTACGGTCA
TCGACCGATGTACTGCAGCGACGACAAGGAGTACGATTGCAATAGCCAAC
TGGAGACGTACATTCGCCAGGGTCTGCCCATGCTCAAGTGGTTCGGCCTG
GAGGATCTGTTCTACAAGCACGGCGTCGACGTGGAGATCTTTGCGCATGA
ACACTTCTACACTCGCCTGTGGCCAATCTACGACTACAAGGTGTACAATG
GCAGTGCCGAGGCGCCATACACTAATCCCAAGGCGCCCATCCAGATCATC
ACGGGTTCCGCCGGCTGCAAGGAGGAGCGCGAGCCCTTCTCCAACGATTT
GCCCATCTGGAATGCCTACCATAGCAATGATTACGGATACACCCGCTTGA
AGGCACATAATGGCACGCATCTTCACTTCGAGCAGGTGTCCGATGACCAG
AACGGCGCCATTGTCGACTCCTTCTGGGTGATCAAGGACAAGCATGGCGC
ATATCCATCGCCCCAATGAAAGCTTTCTAGACCAT
BS04033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RC | 1353 | CG1637-PC | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| CG1637-RD | 1380 | CG1637-PD | 448..941 | 431..924 | 1015 | 80.4 | Plus |
| CG1637-RB | 1377 | CG1637-PB | 445..938 | 431..924 | 1015 | 80.4 | Plus |
| CG1637-RD | 1380 | CG1637-PD | 1..139 | 17..155 | 695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RC | 1708 | CG1637-RC | 246..1598 | 17..1369 | 6765 | 100 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 693..1186 | 431..924 | 1015 | 80.4 | Plus |
| CG1637-RB | 2196 | CG1637-RB | 690..1183 | 431..924 | 1015 | 80.4 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 246..384 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10870903..10871465 | 1229..667 | 2815 | 100 | Minus |
| X | 23542271 | X | 10871529..10872045 | 666..150 | 2570 | 99.8 | Minus |
| X | 23542271 | X | 10870704..10870844 | 1369..1229 | 705 | 100 | Minus |
| X | 23542271 | X | 10877415..10877553 | 155..17 | 695 | 100 | Minus |
| X | 23542271 | X | 10875242..10875476 | 665..431 | 560 | 82.6 | Minus |
| X | 23542271 | X | 10874913..10875170 | 924..667 | 465 | 78.7 | Minus |
| X | 23542271 | X | 10872378..10872477 | 1347..1248 | 230 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:07:45 has no hits.
BS04033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:41 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 1..1353 | 17..1369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:18 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 249..1611 | 11..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:19 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 246..1597 | 17..1368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:41 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 249..1611 | 11..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:32 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 246..1597 | 17..1368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:32 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10870705..10870844 | 1229..1368 | 100 | <- | Minus |
| X | 10870904..10871465 | 667..1228 | 100 | <- | Minus |
| X | 10871529..10872039 | 156..666 | 100 | <- | Minus |
| X | 10877415..10877553 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:19 Download gff for
BS04033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10764738..10764877 | 1229..1368 | 100 | <- | Minus |
| arm_X | 10764937..10765498 | 667..1228 | 100 | <- | Minus |
| arm_X | 10765562..10766072 | 156..666 | 100 | <- | Minus |
| arm_X | 10771448..10771586 | 17..155 | 100 | | Minus |
BS04033.pep Sequence
Translation from 16 to 1368
> BS04033.pep
MQRLQFALLASLLLLVLLLPGIRSTPIDQDVDIVHYQPEQVHLSFGDNLR
DIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDGGKKARTQYI
HNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMG
NENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVGDAFMRQIESV
AAYVPYMVCPGNHEEKYNFSNYRARFNMPGETDSLWYSFNLGPVHFVSFS
TEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITYGHRPMYC
SDDKEYDCNSQLETYIRQGLPMLKWFGLEDLFYKHGVDVEIFAHEHFYTR
LWPIYDYKVYNGSAEAPYTNPKAPIQIITGSAGCKEEREPFSNDLPIWNA
YHSNDYGYTRLKAHNGTHLHFEQVSDDQNGAIVDSFWVIKDKHGAYPSPQ
*
BS04033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-PC | 450 | CG1637-PC | 1..450 | 1..450 | 2457 | 100 | Plus |
| CG1637-PB | 458 | CG1637-PB | 1..456 | 1..446 | 1659 | 68.4 | Plus |
| CG1637-PD | 459 | CG1637-PD | 1..457 | 1..446 | 1657 | 68.5 | Plus |
| CG1637-PE | 453 | CG1637-PE | 1..446 | 1..448 | 1604 | 65.4 | Plus |
| CG1637-PA | 453 | CG1637-PA | 1..446 | 1..448 | 1604 | 65.4 | Plus |
