Clone Sequence Records
BS04037.3prime Sequence
943 bp (855 high quality bases) assembled on 2005-12-01
> BS04037.3prime
ATGGTCTAGAAAGCTTTCAGGCGTAGAACTCGCGGTTATTCGCATTTTTC
GCATACGAATTGTTGGCCGGCGATCTCTTTGGCTCGTCCAGCGCATAGGA
TCCCTCGTCCTTTTTCCTCATGCGGTACACGATGAACATGACCACGAGTA
TGGCGCAGAGCAGGCCAACGACGGCACCGCCAATGACAGCAGCCAGAATT
CCGGGCTGCGAGAAGAAGCTCGACGTGCGATCGTCCTCGCTCATGATGAC
CACTTCGTTGCCGTTGGGCCTGTGATCGATGCCCTTTGTGTCGGAGGGCT
GGCTATTCACGTTCGTATTGGGGTCCAATTCGTGCACGTTGCTGCCACCT
GCACCCGGTCCGCGCTCTGTAATATCTCCATCGTTGCCACCGATCCGCGG
ACCATCGATGTCGCTATCCCCATTGTCATCCTCATCGCCGCCATCCACAT
CGATTTCATCCGTAGTGGGTATGTGACCAGTTTCAACGGTATTATGATGG
ACAACTGGCGGCAGATGTCCCGGCTCGGGACCATCGATGTCGATTTCTTT
GTCCAGCTCCTTGTTATAGTCATAGTCCTTATCGTCGCCATCGTCCTCAT
CGTCATCCTCAGCATCAGCATCGATGCCATCGCCGCTGGACTCCGTATCC
AGATCCTTGTCGAATGGCGGGAACAGCGGTTGCTGCGGTTCTGCGGGAAT
CGTGGGAGCCAACGTGGTGGTGGTGGTGCTACTGCTATTGGCAAAGGACG
ATATCTGGGTTGCTGCCGCCGTTGTGGTGGATGCGGGGGTTGTCGCTGTG
GGGGGTGTTGTCGGCATTGGTGTCGAAGTCGATGTTGTTGGGATTGTGGA
TGAGGTTTGTGTTGGTGTATGAGCTGTGTTTATGCCGGAGTTGCTGCTCT
GCGAGATGCGCGTGTTGTGCGAACTGTGCGAATGCTGATCGGG
BS04037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10497-PA | 1200 | Sdc-RA | 274..1200 | 943..17 | 4610 | 99.8 | Minus |
| CG10497-PB | 681 | Sdc-RB | 341..681 | 357..17 | 1705 | 100 | Minus |
| CG10497-PC | 681 | Sdc-RC | 341..681 | 357..17 | 1705 | 100 | Minus |
| CG10497-PB | 681 | Sdc-RB | 274..341 | 943..876 | 340 | 100 | Minus |
| CG10497-PC | 681 | Sdc-RC | 274..341 | 943..876 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RA | 2482 | CG10497-RA | 610..1536 | 943..17 | 4620 | 99.9 | Minus |
| Sdc-RH | 2245 | CG10497-RH | 376..1299 | 943..17 | 4565 | 99.6 | Minus |
| Sdc-RD | 1869 | CG10497-RD | 610..1533 | 943..17 | 4565 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398065..21398583 | 358..876 | 2580 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21394563..21394736 | 17..190 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 21394878..21395045 | 190..357 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 21399175..21399241 | 877..943 | 335 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 19:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 939..775 | 173 | 60.5 | Minus |
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 23..71 | 110 | 69.4 | Plus |
BS04037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:28 Download gff for
BS04037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-PA | 274..1200 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:54 Download gff for
BS04037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10497-PA | 274..1200 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:21:04 Download gff for
BS04037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 610..1536 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:42 Download gff for
BS04037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 610..1536 | 17..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:42 Download gff for
BS04037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394563..21394735 | 17..189 | 100 | <- | Plus |
| 2R | 21394878..21395045 | 190..357 | 100 | <- | Plus |
| 2R | 21398065..21398583 | 358..876 | 99 | <- | Plus |
| 2R | 21399175..21399241 | 877..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:21:04 Download gff for
BS04037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282383..17282550 | 190..357 | 100 | <- | Plus |
| arm_2R | 17282068..17282240 | 17..189 | 100 | <- | Plus |
| arm_2R | 17285570..17286088 | 358..876 | 99 | <- | Plus |
| arm_2R | 17286680..17286746 | 877..943 | 100 | | Plus |
BS04037.5prime Sequence
878 bp (839 high quality bases) assembled on 2005-11-29
> BS04037.5prime
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACA
TCGACTTCGACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGC
ATCCACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCA
GTAGCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAG
CAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGG
CGATGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACG
ATAAGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGAT
GGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGA
AACTGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATG
AGGATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAAC
GATGGAGATATTACAGAGCGCGGACCGG
BS04037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10497-PA | 1200 | Sdc-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG10497-PB | 681 | Sdc-RB | 1..341 | 17..357 | 1705 | 100 | Plus |
| CG10497-PC | 681 | Sdc-RC | 1..341 | 17..357 | 1705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RA | 2482 | CG10497-RA | 337..1198 | 17..878 | 4310 | 100 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..1195 | 17..878 | 4255 | 99.7 | Plus |
| Sdc-RH | 2245 | CG10497-RH | 195..961 | 109..878 | 3795 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398065..21398583 | 875..357 | 2595 | 100 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 294..458 | 173 | 60.5 | Plus |
BS04037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:29 Download gff for
BS04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:56 Download gff for
BS04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10497-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:59 Download gff for
BS04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1198 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:34 Download gff for
BS04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1198 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:34 Download gff for
BS04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21398063..21398583 | 357..878 | 99 | <- | Minus |
| 2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:59 Download gff for
BS04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17285568..17286088 | 357..878 | 99 | <- | Minus |
| arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BS04037.complete Sequence
1232 bp (1232 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634837
> BS04037.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACAGCTCATACACCAACACAAACCTCATCCACAATCCCAACAACA
TCGACTTCGACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGC
ATCCACCACAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCA
GTAGCACCACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAG
CAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGG
CGATGGCATCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACG
ATAAGGACTATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGAT
GGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGA
AACTGGTCACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATG
AGGATGACAATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAAC
GATGGAGATATTACAGAGCGCGGACCGGGTGCAGGTGGCAGCAACGTGCA
CGAATTGGACCCCAATACGAACGTGAATAGCCAGCCCTCCGACACAAAGG
GCATCGATCACAGGCCCAACGGCAACGAAGTGGTCATCATGAGCGAGGAC
GATCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTCTGGCTGCTGTCAT
TGGCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTCGTGGTCATGTTCA
TCGTGTACCGCATGAGGAAAAAGGACGAGGGATCCTATGCGCTGGACGAG
CCAAAGAGATCGCCGGCCAACAATTCGTATGCGAAAAATGCGAATAACCG
CGAGTTCTACGCCTGAAAGCTTTCTAGACCAT
BS04037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RA | 1200 | CG10497-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
| Sdc-RD | 1197 | CG10497-PD | 1..1197 | 17..1216 | 5920 | 99.8 | Plus |
| Sdc-RJ | 1488 | CG10497-PJ | 629..1488 | 357..1216 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RA | 2482 | CG10497-RA | 337..1536 | 17..1216 | 6000 | 100 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..1533 | 17..1216 | 5920 | 99.8 | Plus |
| Sdc-RH | 2245 | CG10497-RH | 195..1299 | 109..1216 | 5460 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398065..21398583 | 875..357 | 2595 | 100 | Minus |
| 2R | 25286936 | 2R | 21394563..21394736 | 1216..1043 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 21394878..21395045 | 1043..876 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 294..458 | 173 | 60.5 | Plus |
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 1210..1162 | 110 | 69.4 | Minus |
BS04037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:42 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 1..1200 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:12 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 329..1527 | 17..1215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:54 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1535 | 17..1215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:42 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 329..1528 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:38 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1535 | 17..1215 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:38 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394564..21394735 | 1044..1215 | 100 | <- | Minus |
| 2R | 21394878..21395045 | 876..1043 | 100 | <- | Minus |
| 2R | 21398065..21398583 | 357..875 | 100 | <- | Minus |
| 2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:54 Download gff for
BS04037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282069..17282240 | 1044..1215 | 100 | <- | Minus |
| arm_2R | 17282383..17282550 | 876..1043 | 100 | <- | Minus |
| arm_2R | 17285570..17286088 | 357..875 | 100 | <- | Minus |
| arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BS04037.pep Sequence
Translation from 16 to 1215
> BS04037.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA
AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA
DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP
TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN
TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV
GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*
BS04037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-PA | 399 | CG10497-PA | 1..399 | 1..399 | 2096 | 100 | Plus |
| Sdc-PD | 398 | CG10497-PD | 1..398 | 1..399 | 2080 | 99.7 | Plus |
| Sdc-PI | 494 | CG10497-PI | 1..494 | 1..399 | 1553 | 67.4 | Plus |
| Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..399 | 1535 | 66.3 | Plus |
| Sdc-PH | 266 | CG10497-PH | 1..266 | 134..399 | 1411 | 100 | Plus |
