Clone BS04039 Report

Search the DGRC for BS04039

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptSry-beta-RA
Protein status:BS04039.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04039.3prime Sequence

880 bp (859 high quality bases) assembled on 2005-12-01

> BS04039.3prime
ATGGTCTAGAAAGCTTCTAAAAGAACGTGACGGTGGCTTCCTTGGCCTCC
GCCGACTCTGGCTTCTCGACCGGCTGGTGGACCCGCTTGTGCACCTTCAG
GGTGTACTTGTCCACGAACGATTTCTCGCAGTCGGGGCAGGGGTAGCGCG
GCCGGTCCGTCTGGTGGGTGCGCAAGTGGTGCTTGTAGGTGCGCTTGGTC
TTGAACTGCTGGTGGCACACCTCGCAGATCAGGGCGTTCTCCTCGGCGTC
GTGGCGCATCAGATGGTTGTACATCAGCCAGGAGAGCGAGAAGCGTTCGC
CGCACTTGTCGCACTGGTACTTCTTCTTGTCCCAGTGCACCTCCATGTGG
CGCAGGACGTTCCGCTTGTGCGAGAACTTTTTGTCGCAGTAGCGGCATTC
AAGTTCTGTTTTGCCCTCGTGCAAGTTCATATGCAGATCGAGTACCTCGT
CGTCCTTCACTTTCAAGCCACACACGTTGCAGGTGGCCTGCTCGCTCTTC
TGGCAGGTGTCCGCCTTGATGTGCCGCTCGAGCACCTCCTGGCTGGAAAA
CATCTCGCCGCAGATATGGCAGGGTATCTCGGTGGTCTCGGTGAAGAACT
CCTCCTCCGACGACGGCATGCTGTCGTCCGGCTCGCTGAACTGGAACTCC
TCGTCCAGCATCTCCTCCTTCATGAATTCCTCGCACTCATCCTCCTCGCC
CGGCTGCCTTTCGGGCTCCTTGAGGGCGGTGGCCTGGACGATCTTGAAGG
CCGGCACCTGGACGCGGGCCCTCTTTGCCGCCTGTTGCTTGGTCTCCGCC
TTGCCCTCCACCTGCCTGCAGCCGAGCAGTGCGTCCGCAATCTGGCGCTG
CACTTGGCTGAGATTCCTCACCAGCCTGTC

BS04039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7938-PA 1071 Sry-beta-RA 208..1071 880..17 4320 100 Minus
CG17958-PA 1302 Sry-delta-RA 815..855 339..299 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-RB 3300 CG7938-RB 302..1165 880..17 4320 100 Minus
Sry-beta-RA 1260 CG7938-RA 302..1165 880..17 4320 100 Minus
Sry-alpha-RB 3353 CG17957-RB 355..1218 880..17 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30040073..30040936 880..17 4320 100 Minus
3R 32079331 3R 30044196..30044333 436..299 300 81.2 Minus
Blast to na_te.dros performed 2015-02-03 13:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 127..162 617..582 117 80.6 Minus

BS04039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:30 Download gff for BS04039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 208..1071 17..880 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:57 Download gff for BS04039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 208..1071 17..880 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:39 Download gff for BS04039.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 302..1165 17..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:32 Download gff for BS04039.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-alpha-RB 355..1218 17..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:32 Download gff for BS04039.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30040073..30040936 17..880 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:39 Download gff for BS04039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25865795..25866658 17..880 100   Minus

BS04039.5prime Sequence

892 bp (690 high quality bases) assembled on 2005-11-29

> BS04039.5prime
GAAGTTATCAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCG
GCAAGGAGAAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTG
CCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGAT
CATAAACCAGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACT
GCCTGGAGTACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAA
GTGCAGCGCCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGG
CAAGGCGGAGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGC
CGGCCTTCAAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAG
CCGGGCGAGGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGA
CGAGGAGTTCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGG
AGGAGTTCTTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAG
ATGTTTTCCAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTG
CCAGAAGAGCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGG
ACGACGAGGTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAA
CTTGAATGCCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCT
GCGCCACATGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGT
GCGGCGAAAGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGC
CACGACGCCGAGGAGAACGCCCTGATCTGCGAGGTGTGCCAC

BS04039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7938-PA 1071 Sry-beta-RA 1..876 17..892 4355 99.8 Plus
CG17958-PA 1302 Sry-delta-RA 815..855 765..805 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-RB 3300 CG7938-RB 95..970 17..892 4365 99.9 Plus
Sry-beta-RA 1260 CG7938-RA 95..970 17..892 4365 99.9 Plus
Sry-alpha-RB 3353 CG17957-RB 219..1023 88..892 4010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30039937..30040741 88..892 4010 99.9 Plus
3R 32079331 3R 30039813..30039886 17..90 370 100 Plus
3R 32079331 3R 30044196..30044396 668..868 315 77.1 Plus
Blast to na_te.dros performed 2015-02-12 05:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 127..162 487..522 117 80.6 Plus

BS04039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:32 Download gff for BS04039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:58 Download gff for BS04039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:13 Download gff for BS04039.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 95..970 17..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:06 Download gff for BS04039.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 95..970 17..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:06 Download gff for BS04039.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30039813..30039885 17..89 100 -> Plus
3R 30039939..30040741 90..892 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:13 Download gff for BS04039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25865535..25865607 17..89 100 -> Plus
arm_3R 25865661..25866463 90..892 99   Plus

BS04039.complete Sequence

1103 bp (1103 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634838

> BS04039.complete
GAAGTTATCAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCG
GCAAGGAGAAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTG
CCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGAT
CATAAACCAGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACT
GCCTGGAGTACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAA
GTGCAGCGCCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGG
CAAGGCGGAGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGC
CGGCCTTCAAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAG
CCGGGCGAGGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGA
CGAGGAGTTCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGG
AGGAGTTCTTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAG
ATGTTTTCCAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTG
CCAGAAGAGCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGG
ACGACGAGGTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAA
CTTGAATGCCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCT
GCGCCACATGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGT
GCGGCGAACGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGC
CACGACGCCGAGGAGAACGCCCTGATCTGCGAGGTGTGCCACCAGCAGTT
CAAGACCAAGCGCACCTACAAGCACCACTTGCGCACCCACCAGACGGACC
GGCCGCGCTACCCCTGCCCCGACTGCGAGAAATCGTTCGTGGACAAGTAC
ACCCTGAAGGTGCACAAGCGGGTCCACCAGCCGGTCGAGAAGCCAGAGTC
GGCGGAGGCCAAGGAAGCCACCGTCACGTTCTTTTAGAAGCTTTCTAGAC
CAT

BS04039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-RB 1071 CG7938-PB 1..1071 17..1087 5355 100 Plus
Sry-beta-RA 1071 CG7938-PA 1..1071 17..1087 5355 100 Plus
Sry-delta-RA 1302 CG17958-PA 718..855 668..805 300 81.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-RB 3300 CG7938-RB 95..1165 17..1087 5355 100 Plus
Sry-beta-RA 1260 CG7938-RA 95..1165 17..1087 5355 100 Plus
Sry-alpha-RB 3353 CG17957-RB 219..1218 88..1087 5000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30039937..30040936 88..1087 5000 100 Plus
3R 32079331 3R 30039813..30039886 17..90 370 100 Plus
3R 32079331 3R 30044196..30044333 668..805 300 81.2 Plus
Blast to na_te.dros performed 2014-11-26 21:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 127..162 487..522 117 80.6 Plus

BS04039.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:22 Download gff for BS04039.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 82..1152 17..1087 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:42 Download gff for BS04039.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 95..1165 17..1087 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:43 Download gff for BS04039.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 82..1152 17..1087 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:34 Download gff for BS04039.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 95..1165 17..1087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:34 Download gff for BS04039.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30039813..30039885 17..89 100 -> Plus
3R 30039939..30040936 90..1087 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:42 Download gff for BS04039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25865535..25865607 17..89 100 -> Plus
arm_3R 25865661..25866658 90..1087 100   Plus

BS04039.pep Sequence

Translation from 16 to 1086

> BS04039.pep
MSSTRPFCFVCGKEKSVGVFQLIEGCIVPGTFKPIKDILKYFEKIINQRL
ELLPNSAACRDCLEYLFNYDRLVRNLSQVQRQIADALLGCRQVEGKAETK
QQAAKRARVQVPAFKIVQATALKEPERQPGEEDECEEFMKEEMLDEEFQF
SEPDDSMPSSEEEFFTETTEIPCHICGEMFSSQEVLERHIKADTCQKSEQ
ATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVLRHMEV
HWDKKKYQCDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRT
YKHHLRTHQTDRPRYPCPDCEKSFVDKYTLKVHKRVHQPVEKPESAEAKE
ATVTFF*

BS04039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-PB 356 CG7938-PB 1..356 1..356 1928 100 Plus
Sry-beta-PA 356 CG7938-PA 1..356 1..356 1928 100 Plus
Sry-delta-PA 433 CG17958-PA 30..360 28..338 597 35.9 Plus
CG7928-PA 457 CG7928-PA 195..420 119..338 295 30.3 Plus
Opbp-PA 562 CG30443-PA 188..405 136..337 273 27.5 Plus
CG7928-PA 457 CG7928-PA 70..367 44..342 173 25.6 Plus
CG7928-PA 457 CG7928-PA 311..450 170..306 165 28.2 Plus