Clone Sequence Records
BS04039.3prime Sequence
880 bp (859 high quality bases) assembled on 2005-12-01
> BS04039.3prime
ATGGTCTAGAAAGCTTCTAAAAGAACGTGACGGTGGCTTCCTTGGCCTCC
GCCGACTCTGGCTTCTCGACCGGCTGGTGGACCCGCTTGTGCACCTTCAG
GGTGTACTTGTCCACGAACGATTTCTCGCAGTCGGGGCAGGGGTAGCGCG
GCCGGTCCGTCTGGTGGGTGCGCAAGTGGTGCTTGTAGGTGCGCTTGGTC
TTGAACTGCTGGTGGCACACCTCGCAGATCAGGGCGTTCTCCTCGGCGTC
GTGGCGCATCAGATGGTTGTACATCAGCCAGGAGAGCGAGAAGCGTTCGC
CGCACTTGTCGCACTGGTACTTCTTCTTGTCCCAGTGCACCTCCATGTGG
CGCAGGACGTTCCGCTTGTGCGAGAACTTTTTGTCGCAGTAGCGGCATTC
AAGTTCTGTTTTGCCCTCGTGCAAGTTCATATGCAGATCGAGTACCTCGT
CGTCCTTCACTTTCAAGCCACACACGTTGCAGGTGGCCTGCTCGCTCTTC
TGGCAGGTGTCCGCCTTGATGTGCCGCTCGAGCACCTCCTGGCTGGAAAA
CATCTCGCCGCAGATATGGCAGGGTATCTCGGTGGTCTCGGTGAAGAACT
CCTCCTCCGACGACGGCATGCTGTCGTCCGGCTCGCTGAACTGGAACTCC
TCGTCCAGCATCTCCTCCTTCATGAATTCCTCGCACTCATCCTCCTCGCC
CGGCTGCCTTTCGGGCTCCTTGAGGGCGGTGGCCTGGACGATCTTGAAGG
CCGGCACCTGGACGCGGGCCCTCTTTGCCGCCTGTTGCTTGGTCTCCGCC
TTGCCCTCCACCTGCCTGCAGCCGAGCAGTGCGTCCGCAATCTGGCGCTG
CACTTGGCTGAGATTCCTCACCAGCCTGTC
BS04039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7938-PA | 1071 | Sry-beta-RA | 208..1071 | 880..17 | 4320 | 100 | Minus |
CG17958-PA | 1302 | Sry-delta-RA | 815..855 | 339..299 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 302..1165 | 880..17 | 4320 | 100 | Minus |
Sry-beta-RA | 1260 | CG7938-RA | 302..1165 | 880..17 | 4320 | 100 | Minus |
Sry-alpha-RB | 3353 | CG17957-RB | 355..1218 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30040073..30040936 | 880..17 | 4320 | 100 | Minus |
3R | 32079331 | 3R | 30044196..30044333 | 436..299 | 300 | 81.2 | Minus |
Blast to na_te.dros performed 2015-02-03 13:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 617..582 | 117 | 80.6 | Minus |
BS04039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:30 Download gff for
BS04039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 208..1071 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:57 Download gff for
BS04039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 208..1071 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:39 Download gff for
BS04039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 302..1165 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:32 Download gff for
BS04039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-alpha-RB | 355..1218 | 17..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:32 Download gff for
BS04039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30040073..30040936 | 17..880 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:39 Download gff for
BS04039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865795..25866658 | 17..880 | 100 | | Minus |
BS04039.5prime Sequence
892 bp (690 high quality bases) assembled on 2005-11-29
> BS04039.5prime
GAAGTTATCAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCG
GCAAGGAGAAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTG
CCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGAT
CATAAACCAGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACT
GCCTGGAGTACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAA
GTGCAGCGCCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGG
CAAGGCGGAGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGC
CGGCCTTCAAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAG
CCGGGCGAGGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGA
CGAGGAGTTCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGG
AGGAGTTCTTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAG
ATGTTTTCCAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTG
CCAGAAGAGCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGG
ACGACGAGGTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAA
CTTGAATGCCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCT
GCGCCACATGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGT
GCGGCGAAAGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGC
CACGACGCCGAGGAGAACGCCCTGATCTGCGAGGTGTGCCAC
BS04039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7938-PA | 1071 | Sry-beta-RA | 1..876 | 17..892 | 4355 | 99.8 | Plus |
CG17958-PA | 1302 | Sry-delta-RA | 815..855 | 765..805 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 95..970 | 17..892 | 4365 | 99.9 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 95..970 | 17..892 | 4365 | 99.9 | Plus |
Sry-alpha-RB | 3353 | CG17957-RB | 219..1023 | 88..892 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30039937..30040741 | 88..892 | 4010 | 99.9 | Plus |
3R | 32079331 | 3R | 30039813..30039886 | 17..90 | 370 | 100 | Plus |
3R | 32079331 | 3R | 30044196..30044396 | 668..868 | 315 | 77.1 | Plus |
Blast to na_te.dros performed 2015-02-12 05:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 487..522 | 117 | 80.6 | Plus |
BS04039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:32 Download gff for
BS04039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:56:58 Download gff for
BS04039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:13 Download gff for
BS04039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..970 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:06 Download gff for
BS04039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..970 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:06 Download gff for
BS04039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30039813..30039885 | 17..89 | 100 | -> | Plus |
3R | 30039939..30040741 | 90..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:13 Download gff for
BS04039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865535..25865607 | 17..89 | 100 | -> | Plus |
arm_3R | 25865661..25866463 | 90..892 | 99 | | Plus |
BS04039.complete Sequence
1103 bp (1103 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634838
> BS04039.complete
GAAGTTATCAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCG
GCAAGGAGAAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTG
CCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGAT
CATAAACCAGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACT
GCCTGGAGTACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAA
GTGCAGCGCCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGG
CAAGGCGGAGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGC
CGGCCTTCAAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAG
CCGGGCGAGGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGA
CGAGGAGTTCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGG
AGGAGTTCTTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAG
ATGTTTTCCAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTG
CCAGAAGAGCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGG
ACGACGAGGTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAA
CTTGAATGCCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCT
GCGCCACATGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGT
GCGGCGAACGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGC
CACGACGCCGAGGAGAACGCCCTGATCTGCGAGGTGTGCCACCAGCAGTT
CAAGACCAAGCGCACCTACAAGCACCACTTGCGCACCCACCAGACGGACC
GGCCGCGCTACCCCTGCCCCGACTGCGAGAAATCGTTCGTGGACAAGTAC
ACCCTGAAGGTGCACAAGCGGGTCCACCAGCCGGTCGAGAAGCCAGAGTC
GGCGGAGGCCAAGGAAGCCACCGTCACGTTCTTTTAGAAGCTTTCTAGAC
CAT
BS04039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 1071 | CG7938-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Sry-beta-RA | 1071 | CG7938-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Sry-delta-RA | 1302 | CG17958-PA | 718..855 | 668..805 | 300 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 95..1165 | 17..1087 | 5355 | 100 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 95..1165 | 17..1087 | 5355 | 100 | Plus |
Sry-alpha-RB | 3353 | CG17957-RB | 219..1218 | 88..1087 | 5000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30039937..30040936 | 88..1087 | 5000 | 100 | Plus |
3R | 32079331 | 3R | 30039813..30039886 | 17..90 | 370 | 100 | Plus |
3R | 32079331 | 3R | 30044196..30044333 | 668..805 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-26 21:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 487..522 | 117 | 80.6 | Plus |
BS04039.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:22 Download gff for
BS04039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 82..1152 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:42 Download gff for
BS04039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..1165 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:43 Download gff for
BS04039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 82..1152 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:34 Download gff for
BS04039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..1165 | 17..1087 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:34 Download gff for
BS04039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30039813..30039885 | 17..89 | 100 | -> | Plus |
3R | 30039939..30040936 | 90..1087 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:42 Download gff for
BS04039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865535..25865607 | 17..89 | 100 | -> | Plus |
arm_3R | 25865661..25866658 | 90..1087 | 100 | | Plus |
BS04039.pep Sequence
Translation from 16 to 1086
> BS04039.pep
MSSTRPFCFVCGKEKSVGVFQLIEGCIVPGTFKPIKDILKYFEKIINQRL
ELLPNSAACRDCLEYLFNYDRLVRNLSQVQRQIADALLGCRQVEGKAETK
QQAAKRARVQVPAFKIVQATALKEPERQPGEEDECEEFMKEEMLDEEFQF
SEPDDSMPSSEEEFFTETTEIPCHICGEMFSSQEVLERHIKADTCQKSEQ
ATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVLRHMEV
HWDKKKYQCDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRT
YKHHLRTHQTDRPRYPCPDCEKSFVDKYTLKVHKRVHQPVEKPESAEAKE
ATVTFF*
BS04039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-PB | 356 | CG7938-PB | 1..356 | 1..356 | 1928 | 100 | Plus |
Sry-beta-PA | 356 | CG7938-PA | 1..356 | 1..356 | 1928 | 100 | Plus |
Sry-delta-PA | 433 | CG17958-PA | 30..360 | 28..338 | 597 | 35.9 | Plus |
CG7928-PA | 457 | CG7928-PA | 195..420 | 119..338 | 295 | 30.3 | Plus |
Opbp-PA | 562 | CG30443-PA | 188..405 | 136..337 | 273 | 27.5 | Plus |
CG7928-PA | 457 | CG7928-PA | 70..367 | 44..342 | 173 | 25.6 | Plus |
CG7928-PA | 457 | CG7928-PA | 311..450 | 170..306 | 165 | 28.2 | Plus |