Clone BS04040 Report

Search the DGRC for BS04040

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptnuf-RB
Protein status:BS04040.pep: full length peptide match
Sequenced Size:950

Clone Sequence Records

BS04040.3prime Sequence

894 bp (804 high quality bases) assembled on 2005-12-01

> BS04040.3prime
ATGGTCTAGAAAGCTTCTACTTTCGCTCCATGGGCTTGACTTCCAGCAAT
TGAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTT
AAGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGG
CTTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTC
AGCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTT
GGTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGT
TCTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATG
CTCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGC
ACGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCT
TCTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGT
TGCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCG
ATGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTT
CTTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGG
CAGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTC
GCGGTGCCGCTTCTGCTCCTCTGCCAAACGCTCCTCGGCACGCAGTTCCG
ACTCTCGGTACTGCTCTTCGAGCATGTGATAACGCGCCTGAAGGACTGCA
TATTCGGTCTTGGTGCGGGTTGTCCGATCCTCAGCTATATTCTGTGTATC
TGACAAATCGTTCACCTTGCGCTGCAGCAGTTCCAGCCTATAAT

BS04040.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 632..1509 894..17 4340 99.7 Minus
CG33991-PA 1509 nuf-RA 632..1509 894..17 4340 99.7 Minus
CG33991-PB 918 nuf-RB 41..918 894..17 4340 99.7 Minus
CG33991-PD 951 nuf-RD 82..951 886..17 4300 99.7 Minus
CG33991-PE 1587 nuf-RE 718..1587 886..17 4300 99.7 Minus
CG33991-PF 1587 nuf-RF 718..1587 886..17 4300 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RB 2373 CG33991-RB 301..1178 894..17 4360 99.8 Minus
nuf-RA 2696 CG33991-RA 1374..2251 894..17 4360 99.8 Minus
nuf-RC 3446 CG33991-RC 1374..2251 894..17 4360 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 753..295 2295 100 Minus
3L 28110227 3L 14231177..14231325 294..146 745 100 Minus
3L 28110227 3L 14231924..14232055 148..17 660 100 Minus
3L 28110227 3L 14230175..14230310 887..752 650 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 19:27:09 has no hits.

BS04040.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:33 Download gff for BS04040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PD 74..951 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:00 Download gff for BS04040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PB 41..918 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:59 Download gff for BS04040.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1374..2260 7..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:35 Download gff for BS04040.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1374..2260 7..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:35 Download gff for BS04040.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14230168..14230310 752..894 96 -> Minus
3L 14230656..14231112 295..751 100 -> Minus
3L 14231177..14231325 146..294 100 -> Minus
3L 14231927..14232064 7..145 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:59 Download gff for BS04040.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14223268..14223410 752..894 96 -> Minus
arm_3L 14223756..14224212 295..751 100 -> Minus
arm_3L 14224277..14224425 146..294 100 -> Minus
arm_3L 14225027..14225164 7..145 97   Minus

BS04040.5prime Sequence

794 bp (719 high quality bases) assembled on 2005-12-01

> BS04040.5prime
GAAGTTATCACTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACC
AACCAGGCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCT
GAACGGAACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGT

BS04040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 589..1369 14..794 3905 100 Plus
CG33991-PA 1509 nuf-RA 589..1369 14..794 3905 100 Plus
CG33991-PB 918 nuf-RB 1..778 17..794 3890 100 Plus
CG33991-PD 951 nuf-RD 82..811 65..794 3650 100 Plus
CG33991-PE 1587 nuf-RE 718..1447 65..794 3650 100 Plus
CG33991-PF 1587 nuf-RF 718..1447 65..794 3650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RL 2735 CG33991-RL 1331..2111 14..794 3905 100 Plus
nuf-RH 3530 CG33991-RH 1376..2156 14..794 3905 100 Plus
nuf-RG 3533 CG33991-RG 1379..2159 14..794 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 198..656 2295 100 Plus
3L 28110227 3L 14231177..14231314 657..794 690 100 Plus
3L 28110227 3L 14230175..14230310 64..199 680 100 Plus
3L 28110227 3L 14213153..14213203 14..64 255 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:26:00 has no hits.

BS04040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:34 Download gff for BS04040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PC 584..1369 9..794 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:01 Download gff for BS04040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PA 584..1369 9..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:23 Download gff for BS04040.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RG 1374..2159 9..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:12:32 Download gff for BS04040.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RG 1374..2159 9..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:32 Download gff for BS04040.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14213148..14213203 9..64 94 -> Plus
3L 14230176..14230310 65..199 100 -> Plus
3L 14230656..14231112 200..656 100 -> Plus
3L 14231177..14231314 657..794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:23 Download gff for BS04040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14206248..14206303 9..64 94 -> Plus
arm_3L 14223276..14223410 65..199 100 -> Plus
arm_3L 14223756..14224212 200..656 100 -> Plus
arm_3L 14224277..14224414 657..794 100   Plus

BS04040.complete Sequence

950 bp assembled on 2008-08-14

GenBank Submission: FJ634839

> BS04040.complete
GAAGTTATCACTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACC
AACCAGGCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCT
GAACGGAACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAG
CCCAGCTACAACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTT
AAGCACTATATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCA
ATTGCTGGAAGTCAAGCCCATGGAGCGAAAGTAGAAGCTTTCTAGACCAT

BS04040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RA 1509 CG33991-PA 589..1509 14..934 4605 100 Plus
nuf-RC 1509 CG33991-PC 589..1509 14..934 4605 100 Plus
nuf-RB 918 CG33991-PB 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RB 2373 CG33991-RB 258..1178 14..934 4605 100 Plus
nuf-RA 2696 CG33991-RA 1331..2251 14..934 4605 100 Plus
nuf-RC 3446 CG33991-RC 1331..2251 14..934 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 198..656 2295 100 Plus
3L 28110227 3L 14231177..14231325 657..805 745 100 Plus
3L 28110227 3L 14230175..14230310 64..199 680 100 Plus
3L 28110227 3L 14231924..14232055 803..934 660 100 Plus
3L 28110227 3L 14213153..14213203 14..64 255 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:15:38 has no hits.

BS04040.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:02 Download gff for BS04040.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 253..1187 9..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:15 Download gff for BS04040.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1334..2251 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:11 Download gff for BS04040.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 261..1178 17..934 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:53 Download gff for BS04040.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1334..2251 17..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:53 Download gff for BS04040.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14213156..14213203 17..64 100 -> Plus
3L 14230176..14230310 65..199 100 -> Plus
3L 14230656..14231112 200..656 100 -> Plus
3L 14231177..14231325 657..805 100 -> Plus
3L 14231927..14232055 806..934 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:15 Download gff for BS04040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14206256..14206303 17..64 100 -> Plus
arm_3L 14223276..14223410 65..199 100 -> Plus
arm_3L 14223756..14224212 200..656 100 -> Plus
arm_3L 14224277..14224425 657..805 100 -> Plus
arm_3L 14225027..14225155 806..934 100   Plus

BS04040.pep Sequence

Translation from 16 to 933

> BS04040.pep
MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA
RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR
ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE
QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE
LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN
SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK
PMERK*

BS04040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PB 305 CG33991-PB 1..305 1..305 1522 100 Plus
nuf-PA 502 CG33991-PA 198..502 1..305 1522 100 Plus
nuf-PC 502 CG33991-PC 198..502 1..305 1522 100 Plus
nuf-PM 318 CG33991-PM 1..318 1..305 1498 95.9 Plus
nuf-PL 515 CG33991-PL 198..515 1..305 1498 95.9 Plus