Clone Sequence Records
BS04040.3prime Sequence
894 bp (804 high quality bases) assembled on 2005-12-01
> BS04040.3prime
ATGGTCTAGAAAGCTTCTACTTTCGCTCCATGGGCTTGACTTCCAGCAAT
TGAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTT
AAGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGG
CTTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTC
AGCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTT
GGTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGT
TCTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATG
CTCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGC
ACGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCT
TCTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGT
TGCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCG
ATGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTT
CTTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGG
CAGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTC
GCGGTGCCGCTTCTGCTCCTCTGCCAAACGCTCCTCGGCACGCAGTTCCG
ACTCTCGGTACTGCTCTTCGAGCATGTGATAACGCGCCTGAAGGACTGCA
TATTCGGTCTTGGTGCGGGTTGTCCGATCCTCAGCTATATTCTGTGTATC
TGACAAATCGTTCACCTTGCGCTGCAGCAGTTCCAGCCTATAAT
BS04040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 632..1509 | 894..17 | 4340 | 99.7 | Minus |
CG33991-PA | 1509 | nuf-RA | 632..1509 | 894..17 | 4340 | 99.7 | Minus |
CG33991-PB | 918 | nuf-RB | 41..918 | 894..17 | 4340 | 99.7 | Minus |
CG33991-PD | 951 | nuf-RD | 82..951 | 886..17 | 4300 | 99.7 | Minus |
CG33991-PE | 1587 | nuf-RE | 718..1587 | 886..17 | 4300 | 99.7 | Minus |
CG33991-PF | 1587 | nuf-RF | 718..1587 | 886..17 | 4300 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RB | 2373 | CG33991-RB | 301..1178 | 894..17 | 4360 | 99.8 | Minus |
nuf-RA | 2696 | CG33991-RA | 1374..2251 | 894..17 | 4360 | 99.8 | Minus |
nuf-RC | 3446 | CG33991-RC | 1374..2251 | 894..17 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 753..295 | 2295 | 100 | Minus |
3L | 28110227 | 3L | 14231177..14231325 | 294..146 | 745 | 100 | Minus |
3L | 28110227 | 3L | 14231924..14232055 | 148..17 | 660 | 100 | Minus |
3L | 28110227 | 3L | 14230175..14230310 | 887..752 | 650 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:27:09 has no hits.
BS04040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:33 Download gff for
BS04040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PD | 74..951 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:00 Download gff for
BS04040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PB | 41..918 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:59 Download gff for
BS04040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1374..2260 | 7..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:35 Download gff for
BS04040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1374..2260 | 7..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:35 Download gff for
BS04040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14230168..14230310 | 752..894 | 96 | -> | Minus |
3L | 14230656..14231112 | 295..751 | 100 | -> | Minus |
3L | 14231177..14231325 | 146..294 | 100 | -> | Minus |
3L | 14231927..14232064 | 7..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:59 Download gff for
BS04040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14223268..14223410 | 752..894 | 96 | -> | Minus |
arm_3L | 14223756..14224212 | 295..751 | 100 | -> | Minus |
arm_3L | 14224277..14224425 | 146..294 | 100 | -> | Minus |
arm_3L | 14225027..14225164 | 7..145 | 97 | | Minus |
BS04040.5prime Sequence
794 bp (719 high quality bases) assembled on 2005-12-01
> BS04040.5prime
GAAGTTATCACTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACC
AACCAGGCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCT
GAACGGAACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGT
BS04040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 589..1369 | 14..794 | 3905 | 100 | Plus |
CG33991-PA | 1509 | nuf-RA | 589..1369 | 14..794 | 3905 | 100 | Plus |
CG33991-PB | 918 | nuf-RB | 1..778 | 17..794 | 3890 | 100 | Plus |
CG33991-PD | 951 | nuf-RD | 82..811 | 65..794 | 3650 | 100 | Plus |
CG33991-PE | 1587 | nuf-RE | 718..1447 | 65..794 | 3650 | 100 | Plus |
CG33991-PF | 1587 | nuf-RF | 718..1447 | 65..794 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 1331..2111 | 14..794 | 3905 | 100 | Plus |
nuf-RH | 3530 | CG33991-RH | 1376..2156 | 14..794 | 3905 | 100 | Plus |
nuf-RG | 3533 | CG33991-RG | 1379..2159 | 14..794 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 198..656 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231314 | 657..794 | 690 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 64..199 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14213153..14213203 | 14..64 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:26:00 has no hits.
BS04040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:34 Download gff for
BS04040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PC | 584..1369 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:01 Download gff for
BS04040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PA | 584..1369 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:23 Download gff for
BS04040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RG | 1374..2159 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:12:32 Download gff for
BS04040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RG | 1374..2159 | 9..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:32 Download gff for
BS04040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14213148..14213203 | 9..64 | 94 | -> | Plus |
3L | 14230176..14230310 | 65..199 | 100 | -> | Plus |
3L | 14230656..14231112 | 200..656 | 100 | -> | Plus |
3L | 14231177..14231314 | 657..794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:23 Download gff for
BS04040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14206248..14206303 | 9..64 | 94 | -> | Plus |
arm_3L | 14223276..14223410 | 65..199 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 200..656 | 100 | -> | Plus |
arm_3L | 14224277..14224414 | 657..794 | 100 | | Plus |
BS04040.complete Sequence
950 bp assembled on 2008-08-14
GenBank Submission: FJ634839
> BS04040.complete
GAAGTTATCACTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATG
ACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCA
GATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATA
TGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGT
CGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGC
GAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTG
CCAGATGAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAG
AAGCCGCCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCAT
CGCACCGAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCA
ACAGGAGCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGA
AGAAGTCCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGT
GCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAG
CATAAGACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGA
ACCGAACCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACC
AACCAGGCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCT
GAACGGAACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAG
CCCAGCTACAACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTT
AAGCACTATATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCA
ATTGCTGGAAGTCAAGCCCATGGAGCGAAAGTAGAAGCTTTCTAGACCAT
BS04040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RA | 1509 | CG33991-PA | 589..1509 | 14..934 | 4605 | 100 | Plus |
nuf-RC | 1509 | CG33991-PC | 589..1509 | 14..934 | 4605 | 100 | Plus |
nuf-RB | 918 | CG33991-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RB | 2373 | CG33991-RB | 258..1178 | 14..934 | 4605 | 100 | Plus |
nuf-RA | 2696 | CG33991-RA | 1331..2251 | 14..934 | 4605 | 100 | Plus |
nuf-RC | 3446 | CG33991-RC | 1331..2251 | 14..934 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 198..656 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 657..805 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 64..199 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14231924..14232055 | 803..934 | 660 | 100 | Plus |
3L | 28110227 | 3L | 14213153..14213203 | 14..64 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:15:38 has no hits.
BS04040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:02 Download gff for
BS04040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 253..1187 | 9..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:15 Download gff for
BS04040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1334..2251 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:11 Download gff for
BS04040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 261..1178 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:53 Download gff for
BS04040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 1334..2251 | 17..934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:53 Download gff for
BS04040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14213156..14213203 | 17..64 | 100 | -> | Plus |
3L | 14230176..14230310 | 65..199 | 100 | -> | Plus |
3L | 14230656..14231112 | 200..656 | 100 | -> | Plus |
3L | 14231177..14231325 | 657..805 | 100 | -> | Plus |
3L | 14231927..14232055 | 806..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:15 Download gff for
BS04040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14206256..14206303 | 17..64 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 65..199 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 200..656 | 100 | -> | Plus |
arm_3L | 14224277..14224425 | 657..805 | 100 | -> | Plus |
arm_3L | 14225027..14225155 | 806..934 | 100 | | Plus |
BS04040.pep Sequence
Translation from 16 to 933
> BS04040.pep
MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA
RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR
ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE
QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE
LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN
SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK
PMERK*
BS04040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-PB | 305 | CG33991-PB | 1..305 | 1..305 | 1522 | 100 | Plus |
nuf-PA | 502 | CG33991-PA | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PC | 502 | CG33991-PC | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 1..305 | 1498 | 95.9 | Plus |
nuf-PL | 515 | CG33991-PL | 198..515 | 1..305 | 1498 | 95.9 | Plus |