Clone Sequence Records
BS04044.3prime Sequence
708 bp (707 high quality bases) assembled on 2005-12-01
> BS04044.3prime
ATGGTCTAGAAAGCTTTTATTCGGAGGGGGTGAGATCGTTTTCAGGTTCG
TTTTCGTTGAGAATTTGAGAAAGCAGATCGTAGAGTGGTTCTAATATCTT
TTTCGCTCCAGCATTGGTTAGATTTTTATAGTCGAACATATCGTGATGAC
TGATACTGCCGTCGGTCTGGACCAAACCCTTGTCAATGGCCACCGTCTGG
ACGCGATACAAGCCCTTGGTCAATCCATTGACCACCTCGTTGATTTTGGC
ATTCTTTTCGCGCAACTTATTGGGCTGCTGGCCACGCGGCAGTAGCGAGG
GCAAAACGATATAGGCGTTGGGCAGCTTTTGCCGGATTTTCGTTACGTTC
GCGAGCACACCCTCGGCCACTTCCTCCGCGCTGTTCCGCACATTATTGGT
GCCCACATGGAGGACGACGATTTTGGGATTCACATTGTCCAGCGCACCGT
TTTCGATGCGCCACAGTACGTGCTCGGTGCAGTCGTCGCGAATGCTGAAG
TTAAGGCAGTGCAGCGGCGCAAAGTACTTATTCCAGGCCTCCGTGTCCTG
GACGGTCTCGAAGATGCAGTCGCCGAGGAATATCACATCCGGATCCTTTT
CGCGGCAATCGGAGATGAACCGGCGATGTATGCTGTGCCAACGCTTGTCG
CCATCCAGATCGGGCAATGGGGTGGGCAGCACACAGGGATTCATGTCGAC
TGATAACT
BS04044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8962-PA | 678 | Paf-AHalpha-RA | 1..678 | 694..17 | 3390 | 100 | Minus |
| CG8962-PB | 678 | Paf-AHalpha-RB | 1..678 | 694..17 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1132 | 698..14 | 3410 | 99.9 | Minus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1204 | 698..14 | 3410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 299..698 | 1985 | 99.8 | Plus |
| X | 23542271 | X | 15784312..15784596 | 14..298 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:38:35 has no hits.
BS04044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:41 Download gff for
BS04044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-PB | 1..678 | 17..694 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:11 Download gff for
BS04044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-PB | 1..678 | 17..694 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:54 Download gff for
BS04044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 520..1204 | 14..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:04 Download gff for
BS04044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 520..1204 | 14..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:04 Download gff for
BS04044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784312..15784596 | 14..298 | 100 | <- | Plus |
| X | 15784665..15785064 | 299..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:54 Download gff for
BS04044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678345..15678629 | 14..298 | 100 | <- | Plus |
| arm_X | 15678698..15679097 | 299..698 | 99 | | Plus |
BS04044.5prime Sequence
708 bp (707 high quality bases) assembled on 2005-11-29
> BS04044.5prime
GAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCG
ATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCC
GATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTT
CGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGC
ACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGG
CGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCT
CCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGG
GTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTAT
ATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCG
CGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCT
TGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGAC
GGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGC
TGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTC
TCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAATAAAAGCTT
TCTAGACC
BS04044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8962-PA | 678 | Paf-AHalpha-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
| CG8962-PB | 678 | Paf-AHalpha-RB | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1132 | 13..697 | 3410 | 99.9 | Plus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1204 | 13..697 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 412..13 | 1985 | 99.8 | Minus |
| X | 23542271 | X | 15784312..15784596 | 697..413 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:17:10 has no hits.
BS04044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:42 Download gff for
BS04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-PB | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:12 Download gff for
BS04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-PB | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:36 Download gff for
BS04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 520..1204 | 13..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:28 Download gff for
BS04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 520..1204 | 13..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:28 Download gff for
BS04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784312..15784596 | 413..697 | 100 | <- | Minus |
| X | 15784665..15785064 | 13..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:36 Download gff for
BS04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678345..15678629 | 413..697 | 100 | <- | Minus |
| arm_X | 15678698..15679097 | 13..412 | 99 | | Minus |
BS04044.complete Sequence
710 bp (710 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634840
> BS04044.complete
GAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCG
ATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCC
GATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTT
CGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGC
ACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGG
CGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCT
CCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGG
GTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTAT
ATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCG
CGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCT
TGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGAC
GGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGC
TGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTC
TCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAATAAAAGCTT
TCTAGACCAT
BS04044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 678 | CG8962-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
| Paf-AHalpha-RA | 678 | CG8962-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1132 | 13..697 | 3410 | 99.9 | Plus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1204 | 13..697 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 412..13 | 1985 | 99.8 | Minus |
| X | 23542271 | X | 15784312..15784596 | 697..413 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:48:35 has no hits.
BS04044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:44 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RB | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:23 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RB | 444..1128 | 13..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:51 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 524..1199 | 17..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:45 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RB | 444..1128 | 13..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:27 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 524..1199 | 17..692 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:27 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784317..15784596 | 413..692 | 100 | <- | Minus |
| X | 15784665..15785060 | 17..412 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:51 Download gff for
BS04044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678350..15678629 | 413..692 | 100 | <- | Minus |
| arm_X | 15678698..15679093 | 17..412 | 100 | | Minus |
BS04044.pep Sequence
Translation from 16 to 693
> BS04044.pep
MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD
TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN
NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK
INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI
LEPLYDLLSQILNENEPENDLTPSE*
BS04044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-PB | 225 | CG8962-PB | 1..225 | 1..225 | 1199 | 100 | Plus |
| Paf-AHalpha-PA | 225 | CG8962-PA | 1..225 | 1..225 | 1199 | 100 | Plus |
