Clone Sequence Records
BS04045.3prime Sequence
933 bp (865 high quality bases) assembled on 2005-12-01
> BS04045.3prime
ATGGTCTAGAAAGCTTTTAGTACCATTTGGACTCCTCCTTGTCAGCGAGC
AGAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACT
GCCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGC
TGGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGA
TAGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCC
GATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTG
CAACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCTG
TCTCTTGTGTACCAGTAGAAGGCGATAGTGACCAGAAAGGGAGCCACTAT
CACCCAGAAGAGCAGCTCCCCGCCCCTGACAATGTCCGGTCGCCTTGGGT
TCTTGTATAGCCACAGCTCTTCCTCGTGGATTTCCCGTTTGAATGCTGTC
ATCGTCTCCAACTTGAAGAAGGTAATGACGAGGAGAACGCGAAGAACAAC
ATCTACGGCATCGCTGAGCTTCGCATTAGAGTTTCCTGTTCTGTGGCTTC
GTTCCTCTCGCTTTTCTGGCTGAACGGAGCTGCTGTCCGTGTTCATAGCA
AGTTCATTGCGCCACATTTCGTCGTCGTTGGTCCTGGTCCTCGATCCTGT
ATTCCTGACGTCCTCTGCGGAACTGTCGCTGAGGGTTCGCCTGGATTCTT
GACCTTCCTTGCTCGCAGTCATTTCGTTAGTCCGTTGGGTATATTCGGTT
GTCAGCTTAGGCCTGGTGCTTGTCGCCTGCTCCTTGCCTGTGCCGCCAAT
ATTGCCGTTGCGGTCGATTGGATTTTCGCGGCGGCGACTTCGTAGGTCCG
CCGTAACACTATCGGGCATGTCGACTGATAACT
BS04045.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PA | 903 | CG12746-RA | 1..903 | 919..17 | 4465 | 99.7 | Minus |
CG12746-PC | 1239 | CG12746-RC | 1..576 | 919..344 | 2830 | 99.6 | Minus |
CG12746-PB | 1092 | CG12746-RB | 1..429 | 772..344 | 2145 | 100 | Minus |
CG12746-PD | 1092 | CG12746-RD | 1..429 | 772..344 | 2145 | 100 | Minus |
CG12746-PC | 1239 | CG12746-RC | 908..1239 | 348..17 | 1660 | 100 | Minus |
CG12746-PB | 1092 | CG12746-RB | 761..1092 | 348..17 | 1660 | 100 | Minus |
CG12746-PD | 1092 | CG12746-RD | 761..1092 | 348..17 | 1660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 919..344 | 2850 | 99.7 | Minus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 826..344 | 2415 | 100 | Minus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 826..344 | 2415 | 100 | Minus |
CG12746-RE | 1509 | CG12746-RE | 1103..1441 | 348..10 | 1695 | 100 | Minus |
CG12746-RD | 1381 | CG12746-RD | 975..1313 | 348..10 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567029..5567367 | 348..10 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 5566086..5566398 | 828..516 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 5566467..5566638 | 515..344 | 860 | 100 | Minus |
3R | 32079331 | 3R | 5565361..5565454 | 919..826 | 440 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:25:00 has no hits.
BS04045.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:43 Download gff for
BS04045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 1..903 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:14 Download gff for
BS04045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 1..903 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:22 Download gff for
BS04045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 343..925 | 98 | <- | Minus |
CG12746-RE | 1109..1441 | 10..342 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:53:02 Download gff for
BS04045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 343..925 | 98 | <- | Minus |
CG12746-RE | 1109..1441 | 10..342 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:53:02 Download gff for
BS04045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5565355..5565453 | 827..925 | 95 | -> | Minus |
3R | 5566088..5566398 | 516..826 | 100 | -> | Minus |
3R | 5566467..5566634 | 348..515 | 100 | -> | Minus |
3R | 5567030..5567367 | 10..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:22 Download gff for
BS04045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391077..1391175 | 827..925 | 95 | -> | Minus |
arm_3R | 1391810..1392120 | 516..826 | 100 | -> | Minus |
arm_3R | 1392189..1392356 | 348..515 | 100 | -> | Minus |
arm_3R | 1392752..1393089 | 10..347 | 100 | | Minus |
BS04045.5prime Sequence
866 bp (786 high quality bases) assembled on 2005-11-29
> BS04045.5prime
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGG
BS04045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PA | 903 | CG12746-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG12746-PC | 1239 | CG12746-RC | 1..576 | 17..592 | 2880 | 100 | Plus |
CG12746-PB | 1092 | CG12746-RB | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-PD | 1092 | CG12746-RD | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-PC | 1239 | CG12746-RC | 908..1186 | 588..866 | 1395 | 100 | Plus |
CG12746-PB | 1092 | CG12746-RB | 761..1039 | 588..866 | 1395 | 100 | Plus |
CG12746-PD | 1092 | CG12746-RD | 761..1039 | 588..866 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 17..592 | 2880 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 110..592 | 2415 | 100 | Plus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 110..592 | 2415 | 100 | Plus |
CG12746-RE | 1509 | CG12746-RE | 1103..1381 | 588..866 | 1395 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 975..1253 | 588..866 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566086..5566398 | 108..420 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 5567029..5567307 | 588..866 | 1395 | 100 | Plus |
3R | 32079331 | 3R | 5566467..5566638 | 421..592 | 860 | 100 | Plus |
3R | 32079331 | 3R | 5565361..5565454 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:57:07 has no hits.
BS04045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:44 Download gff for
BS04045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:15 Download gff for
BS04045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:37 Download gff for
BS04045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1381 | 594..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:12 Download gff for
BS04045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 1109..1381 | 594..866 | 100 | | Plus |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:12 Download gff for
BS04045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566467..5566634 | 421..588 | 100 | -> | Plus |
3R | 5567030..5567307 | 589..866 | 100 | | Plus |
3R | 5565355..5565453 | 11..109 | 97 | -> | Plus |
3R | 5566088..5566398 | 110..420 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:37 Download gff for
BS04045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1392752..1393029 | 589..866 | 100 | | Plus |
arm_3R | 1391077..1391175 | 11..109 | 97 | -> | Plus |
arm_3R | 1391810..1392120 | 110..420 | 100 | -> | Plus |
arm_3R | 1392189..1392356 | 421..588 | 100 | -> | Plus |
BS04045.complete Sequence
935 bp (935 high quality bases) assembled on 2006-02-02
> BS04045.complete
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGA
GGAGTCCAAATGGTACTAAAAGCTTTCTAGACCAT
BS04045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1092 | CG12746-PE | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-RD | 1092 | CG12746-PD | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-RB | 1092 | CG12746-PB | 1..429 | 164..592 | 2145 | 100 | Plus |
CG12746-RE | 1092 | CG12746-PE | 761..1092 | 588..919 | 1660 | 100 | Plus |
CG12746-RD | 1092 | CG12746-PD | 761..1092 | 588..919 | 1660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 17..592 | 2880 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 110..592 | 2415 | 100 | Plus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 110..592 | 2415 | 100 | Plus |
CG12746-RE | 1509 | CG12746-RE | 1103..1441 | 588..926 | 1695 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 975..1313 | 588..926 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567029..5567367 | 588..926 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 5566086..5566398 | 108..420 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 5566467..5566638 | 421..592 | 860 | 100 | Plus |
3R | 32079331 | 3R | 5565361..5565454 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:39:05 has no hits.
BS04045.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:56 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 1..431 | 164..593 | 99 | <- | Plus |
CG12746-RE | 767..1092 | 594..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:21 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 594..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:36 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 1109..1432 | 594..917 | 100 | | Plus |
CG12746-RE | 196..773 | 17..593 | 99 | <- | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:56 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 11..593 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 594..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:02 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 196..773 | 17..593 | 99 | <- | Plus |
CG12746-RE | 1109..1432 | 594..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:02 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566088..5566398 | 110..420 | 100 | -> | Plus |
3R | 5566467..5566634 | 421..588 | 100 | -> | Plus |
3R | 5565361..5565453 | 17..109 | 100 | -> | Plus |
3R | 5567030..5567358 | 589..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:36 Download gff for
BS04045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391083..1391175 | 17..109 | 100 | -> | Plus |
arm_3R | 1391810..1392120 | 110..420 | 100 | -> | Plus |
arm_3R | 1392189..1392356 | 421..588 | 100 | -> | Plus |
arm_3R | 1392752..1393080 | 589..917 | 100 | | Plus |
BS04045.pep Sequence
Translation from 16 to 918
> BS04045.pep
MPDSCTADLRSRRRENPIDRNGNIGGTGKEQATSTRPKLTTEYTQRTNEM
TASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSVQ
PEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHEE
ELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRLCIAVIPL
FIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYTQYYPSIFCPDAGI
PLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVRRPLLADKEESKWY
*
BS04045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PE | 363 | CG12746-PE | 1..143 | 50..192 | 738 | 100 | Plus |
CG12746-PD | 363 | CG12746-PD | 1..143 | 50..192 | 738 | 100 | Plus |
CG12746-PB | 363 | CG12746-PB | 1..143 | 50..192 | 738 | 100 | Plus |
CG12746-PE | 363 | CG12746-PE | 255..363 | 192..300 | 601 | 100 | Plus |
CG12746-PD | 363 | CG12746-PD | 255..363 | 192..300 | 601 | 100 | Plus |
CG12746-PB | 363 | CG12746-PB | 255..363 | 192..300 | 601 | 100 | Plus |