Clone BS04045 Report

Search the DGRC for BS04045

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS04045.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS04045.3prime Sequence

933 bp (865 high quality bases) assembled on 2005-12-01

> BS04045.3prime
ATGGTCTAGAAAGCTTTTAGTACCATTTGGACTCCTCCTTGTCAGCGAGC
AGAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACT
GCCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGC
TGGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGA
TAGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCC
GATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTG
CAACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCTG
TCTCTTGTGTACCAGTAGAAGGCGATAGTGACCAGAAAGGGAGCCACTAT
CACCCAGAAGAGCAGCTCCCCGCCCCTGACAATGTCCGGTCGCCTTGGGT
TCTTGTATAGCCACAGCTCTTCCTCGTGGATTTCCCGTTTGAATGCTGTC
ATCGTCTCCAACTTGAAGAAGGTAATGACGAGGAGAACGCGAAGAACAAC
ATCTACGGCATCGCTGAGCTTCGCATTAGAGTTTCCTGTTCTGTGGCTTC
GTTCCTCTCGCTTTTCTGGCTGAACGGAGCTGCTGTCCGTGTTCATAGCA
AGTTCATTGCGCCACATTTCGTCGTCGTTGGTCCTGGTCCTCGATCCTGT
ATTCCTGACGTCCTCTGCGGAACTGTCGCTGAGGGTTCGCCTGGATTCTT
GACCTTCCTTGCTCGCAGTCATTTCGTTAGTCCGTTGGGTATATTCGGTT
GTCAGCTTAGGCCTGGTGCTTGTCGCCTGCTCCTTGCCTGTGCCGCCAAT
ATTGCCGTTGCGGTCGATTGGATTTTCGCGGCGGCGACTTCGTAGGTCCG
CCGTAACACTATCGGGCATGTCGACTGATAACT

BS04045.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PA 903 CG12746-RA 1..903 919..17 4465 99.7 Minus
CG12746-PC 1239 CG12746-RC 1..576 919..344 2830 99.6 Minus
CG12746-PB 1092 CG12746-RB 1..429 772..344 2145 100 Minus
CG12746-PD 1092 CG12746-RD 1..429 772..344 2145 100 Minus
CG12746-PC 1239 CG12746-RC 908..1239 348..17 1660 100 Minus
CG12746-PB 1092 CG12746-RB 761..1092 348..17 1660 100 Minus
CG12746-PD 1092 CG12746-RD 761..1092 348..17 1660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 919..344 2850 99.7 Minus
CG12746-RD 1381 CG12746-RD 161..643 826..344 2415 100 Minus
CG12746-RB 1339 CG12746-RB 119..601 826..344 2415 100 Minus
CG12746-RE 1509 CG12746-RE 1103..1441 348..10 1695 100 Minus
CG12746-RD 1381 CG12746-RD 975..1313 348..10 1695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567029..5567367 348..10 1695 100 Minus
3R 32079331 3R 5566086..5566398 828..516 1565 100 Minus
3R 32079331 3R 5566467..5566638 515..344 860 100 Minus
3R 32079331 3R 5565361..5565454 919..826 440 97.9 Minus
Blast to na_te.dros performed on 2015-02-06 15:25:00 has no hits.

BS04045.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:43 Download gff for BS04045.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..903 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:14 Download gff for BS04045.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..903 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:22 Download gff for BS04045.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 343..925 98 <- Minus
CG12746-RE 1109..1441 10..342 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:53:02 Download gff for BS04045.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 343..925 98 <- Minus
CG12746-RE 1109..1441 10..342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:53:02 Download gff for BS04045.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5565355..5565453 827..925 95 -> Minus
3R 5566088..5566398 516..826 100 -> Minus
3R 5566467..5566634 348..515 100 -> Minus
3R 5567030..5567367 10..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:22 Download gff for BS04045.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391077..1391175 827..925 95 -> Minus
arm_3R 1391810..1392120 516..826 100 -> Minus
arm_3R 1392189..1392356 348..515 100 -> Minus
arm_3R 1392752..1393089 10..347 100   Minus

BS04045.5prime Sequence

866 bp (786 high quality bases) assembled on 2005-11-29

> BS04045.5prime
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGG

BS04045.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PA 903 CG12746-RA 1..850 17..866 4250 100 Plus
CG12746-PC 1239 CG12746-RC 1..576 17..592 2880 100 Plus
CG12746-PB 1092 CG12746-RB 1..429 164..592 2145 100 Plus
CG12746-PD 1092 CG12746-RD 1..429 164..592 2145 100 Plus
CG12746-PC 1239 CG12746-RC 908..1186 588..866 1395 100 Plus
CG12746-PB 1092 CG12746-RB 761..1039 588..866 1395 100 Plus
CG12746-PD 1092 CG12746-RD 761..1039 588..866 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 17..592 2880 100 Plus
CG12746-RD 1381 CG12746-RD 161..643 110..592 2415 100 Plus
CG12746-RB 1339 CG12746-RB 119..601 110..592 2415 100 Plus
CG12746-RE 1509 CG12746-RE 1103..1381 588..866 1395 100 Plus
CG12746-RD 1381 CG12746-RD 975..1253 588..866 1395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566086..5566398 108..420 1565 100 Plus
3R 32079331 3R 5567029..5567307 588..866 1395 100 Plus
3R 32079331 3R 5566467..5566638 421..592 860 100 Plus
3R 32079331 3R 5565361..5565454 17..110 470 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:57:07 has no hits.

BS04045.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:44 Download gff for BS04045.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:15 Download gff for BS04045.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:37 Download gff for BS04045.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1381 594..866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:12 Download gff for BS04045.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1109..1381 594..866 100   Plus
CG12746-RE 190..773 11..593 99 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:12 Download gff for BS04045.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566467..5566634 421..588 100 -> Plus
3R 5567030..5567307 589..866 100   Plus
3R 5565355..5565453 11..109 97 -> Plus
3R 5566088..5566398 110..420 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:37 Download gff for BS04045.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1392752..1393029 589..866 100   Plus
arm_3R 1391077..1391175 11..109 97 -> Plus
arm_3R 1391810..1392120 110..420 100 -> Plus
arm_3R 1392189..1392356 421..588 100 -> Plus

BS04045.complete Sequence

935 bp (935 high quality bases) assembled on 2006-02-02

> BS04045.complete
GAAGTTATCAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTC
GCCGCCGCGAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGC
AAGGAGCAGGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCA
ACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAA
CCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACC
AGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGA
CAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAG
GAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTT
CTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACG
GGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGG
ACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTT
CTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCAT
CGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCT
GCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGC
CTGTTTGCAGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTG
CCCTGATGCCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCC
AGTACCAGCGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCAC
CATCTCGATGGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGA
GGAGTCCAAATGGTACTAAAAGCTTTCTAGACCAT

BS04045.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1092 CG12746-PE 1..429 164..592 2145 100 Plus
CG12746-RD 1092 CG12746-PD 1..429 164..592 2145 100 Plus
CG12746-RB 1092 CG12746-PB 1..429 164..592 2145 100 Plus
CG12746-RE 1092 CG12746-PE 761..1092 588..919 1660 100 Plus
CG12746-RD 1092 CG12746-PD 761..1092 588..919 1660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 17..592 2880 100 Plus
CG12746-RD 1381 CG12746-RD 161..643 110..592 2415 100 Plus
CG12746-RB 1339 CG12746-RB 119..601 110..592 2415 100 Plus
CG12746-RE 1509 CG12746-RE 1103..1441 588..926 1695 100 Plus
CG12746-RD 1381 CG12746-RD 975..1313 588..926 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567029..5567367 588..926 1695 100 Plus
3R 32079331 3R 5566086..5566398 108..420 1565 100 Plus
3R 32079331 3R 5566467..5566638 421..592 860 100 Plus
3R 32079331 3R 5565361..5565454 17..110 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:39:05 has no hits.

BS04045.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:56 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1..431 164..593 99 <- Plus
CG12746-RE 767..1092 594..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:21 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1441 594..926 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:36 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1109..1432 594..917 100   Plus
CG12746-RE 196..773 17..593 99 <- Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:56 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 11..593 99 <- Plus
CG12746-RE 1109..1441 594..926 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:02 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 196..773 17..593 99 <- Plus
CG12746-RE 1109..1432 594..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:02 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5566088..5566398 110..420 100 -> Plus
3R 5566467..5566634 421..588 100 -> Plus
3R 5565361..5565453 17..109 100 -> Plus
3R 5567030..5567358 589..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:36 Download gff for BS04045.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391083..1391175 17..109 100 -> Plus
arm_3R 1391810..1392120 110..420 100 -> Plus
arm_3R 1392189..1392356 421..588 100 -> Plus
arm_3R 1392752..1393080 589..917 100   Plus

BS04045.pep Sequence

Translation from 16 to 918

> BS04045.pep
MPDSCTADLRSRRRENPIDRNGNIGGTGKEQATSTRPKLTTEYTQRTNEM
TASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSVQ
PEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHEE
ELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRLCIAVIPL
FIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYTQYYPSIFCPDAGI
PLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVRRPLLADKEESKWY
*

BS04045.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PE 363 CG12746-PE 1..143 50..192 738 100 Plus
CG12746-PD 363 CG12746-PD 1..143 50..192 738 100 Plus
CG12746-PB 363 CG12746-PB 1..143 50..192 738 100 Plus
CG12746-PE 363 CG12746-PE 255..363 192..300 601 100 Plus
CG12746-PD 363 CG12746-PD 255..363 192..300 601 100 Plus
CG12746-PB 363 CG12746-PB 255..363 192..300 601 100 Plus