Clone Sequence Records
BS04047.3prime Sequence
564 bp (535 high quality bases) assembled on 2005-12-01
> BS04047.3prime
ATGGTCTAGAAAGCTTTTAAATCTTCTTTGACTTCGTTTTTGCTATTGTA
ATAAAAGGAGCCATAAGGGAATAAAGACTCCGCACCTTCTCGTATGGAAA
ATCAATGCGCCTCAGTGCTAAGATCAGGACGTAAAGTAAAATTAAATAAA
CCGCAACTACGTCGAGTAAGTAGTATTGCCACCATGTCATATTTCGGGAT
GGAGTCTGTAGATGATAAGCGCCATTATGTCGCAGCACATATTCGGTCCA
GTATATGGCAGTATCTAGCGCTGTTGAGCGCTGGTCCAGGAACAGCTTTT
GCCGATGTCGTGCTGAATTTCTGTAGCGAGGATTGTGAATCACTTTCATA
ATAGCCTTGTACAACTGATTGGCTGACAGCGTCTGAAGATCTAACTTTAT
TGCATATCCATCGACCTCGGCCTTGGCTGAGTTAACATCGTGGTCGCAGA
ATACCGGCATTGTAACAACGGGTACTCCGTGATATACCGTCTCAAACATG
CTTAGCAAGCCTCCATGTGTTACAAACGCTCTAAGCTTGGGATGTCCCAA
AATGTCCTGCTGCG
BS04047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-PA | 1308 | CG30438-RA | 761..1308 | 564..17 | 2740 | 100 | Minus |
| CG30438-PB | 1575 | CG30438-RB | 1028..1575 | 564..17 | 2740 | 100 | Minus |
| CG30438-PC | 1575 | CG30438-RC | 1028..1575 | 564..17 | 2740 | 100 | Minus |
| CG30438-PD | 1575 | CG30438-RD | 1028..1575 | 564..17 | 2740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 1132..1689 | 564..7 | 2760 | 99.6 | Minus |
| CG30438-RD | 2310 | CG30438-RD | 1216..1773 | 564..7 | 2760 | 99.6 | Minus |
| CG30438-RC | 2732 | CG30438-RC | 1638..2195 | 564..7 | 2760 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5548397..5548775 | 564..186 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 5548828..5549006 | 185..7 | 865 | 98.9 | Minus |
| 2R | 25286936 | 2R | 5267417..5267641 | 331..564 | 670 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:44:04 has no hits.
BS04047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:47 Download gff for
BS04047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-PD | 1028..1575 | 17..564 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:19 Download gff for
BS04047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-PD | 1028..1575 | 17..564 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:54 Download gff for
BS04047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 1638..2199 | 1..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:26 Download gff for
BS04047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 1638..2199 | 1..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:26 Download gff for
BS04047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5548397..5548775 | 186..564 | 100 | -> | Minus |
| 2R | 5548828..5549010 | 1..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:54 Download gff for
BS04047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1435902..1436280 | 186..564 | 100 | -> | Minus |
| arm_2R | 1436333..1436515 | 1..185 | 97 | | Minus |
BS04047.5prime Sequence
559 bp (462 high quality bases) assembled on 2005-12-01
> BS04047.5prime
GAAGTTATCAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACG
GACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAA
ACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGC
TTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTA
TGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGA
AATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGA
CACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGAC
AAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGA
GAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGT
GAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCT
TTAATCCGAATGTAGCAGAAGTGGCTTGCATTCATTGTAGGCCAGCTAGA
AAACTTCCT
BS04047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-PB | 1575 | CG30438-RB | 267..810 | 16..559 | 2720 | 100 | Plus |
| CG30438-PC | 1575 | CG30438-RC | 267..810 | 16..559 | 2720 | 100 | Plus |
| CG30438-PD | 1575 | CG30438-RD | 267..810 | 16..559 | 2720 | 100 | Plus |
| CG30438-PA | 1308 | CG30438-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 371..914 | 16..559 | 2720 | 100 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 455..998 | 16..559 | 2720 | 100 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 877..1420 | 16..559 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547628..5547924 | 71..367 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5547987..5548179 | 367..559 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 5267807..5268042 | 324..71 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5539375..5539429 | 16..70 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:42:29 has no hits.
BS04047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:48 Download gff for
BS04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-PD | 262..810 | 8..559 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:21 Download gff for
BS04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-PD | 262..810 | 8..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:03:13 Download gff for
BS04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 872..1420 | 8..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:46:07 Download gff for
BS04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 872..1420 | 8..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:46:07 Download gff for
BS04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5547988..5548179 | 368..559 | 100 | | Plus |
| 2R | 5539370..5539429 | 8..70 | 95 | -> | Plus |
| 2R | 5547628..5547924 | 71..367 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:03:13 Download gff for
BS04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1435493..1435684 | 368..559 | 100 | | Plus |
| arm_2R | 1426875..1426934 | 8..70 | 95 | -> | Plus |
| arm_2R | 1435133..1435429 | 71..367 | 100 | -> | Plus |
BS04047.complete Sequence
1340 bp assembled on 2008-01-02
GenBank Submission: FJ634841
> BS04047.complete
GAAGTTATCAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACG
GACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAA
ACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGC
TTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTA
TGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGA
AATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGA
CACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGAC
AAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGA
GAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGT
GAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCT
TTAATCCGAATGTAGCAGAAGTGGCTTGCATTCATTGTAGGCCAGCTAGA
AAACTTCCTAGAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGG
ATTTATTTACGTTTCTATGGGTTCCTCCGTAAAGGCCGCGAACATGCCAG
AGGCGTTGCGTCACATGCTTGTAAAGACCTTTGCACGTCTTCCCTATCAT
GTGCTATGGAAGTATGAAGGCAGTTCGACAGATATAAAAGACATCACATC
AAACGTAAAACTTTCACGGTGGTTACCGCAGCAGGACATTTTGGGACATC
CCAAGCTTAGAGCGTTTGTAACACATGGAGGCTTGCTAAGCATGTTTGAG
ACGGTATATCACGGAGTACCCGTTGTTACAATGCCGGTATTCTGCGACCA
CGATGTTAACTCAGCCAAGGCCGAGGTCGATGGATATGCAATAAAGTTAG
ATCTTCAGACGCTGTCAGCCAATCAGTTGTACAAGGCTATTATGAAAGTG
ATTCACAATCCTCGCTACAGAAATTCAGCACGACATCGGCAAAAGCTGTT
CCTGGACCAGCGCTCAACAGCGCTAGATACTGCCATATACTGGACCGAAT
ATGTGCTGCGACATAATGGCGCTTATCATCTACAGACTCCATCCCGAAAT
ATGACATGGTGGCAATACTACTTACTCGACGTAGTTGCGGTTTATTTAAT
TTTACTTTACGTCCTGATCTTAGCACTGAGGCGCATTGATTTTCCATACG
AGAAGGTGCGGAGTCTTTATTCCCTTATGGCTCCTTTTATTACAATAGCA
AAAACGAAGTCAAAGAAGATTTAAAAGCTTTCTAGACCAT
BS04047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 1575 | CG30438-PE | 267..1575 | 16..1324 | 6545 | 100 | Plus |
| CG30438-RD | 1575 | CG30438-PD | 267..1575 | 16..1324 | 6545 | 100 | Plus |
| CG30438-RC | 1575 | CG30438-PC | 267..1575 | 16..1324 | 6545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 371..1689 | 16..1334 | 6565 | 99.8 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 455..1773 | 16..1334 | 6565 | 99.8 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 877..2195 | 16..1334 | 6565 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547987..5548775 | 367..1155 | 3945 | 100 | Plus |
| 2R | 25286936 | 2R | 5547628..5547924 | 71..367 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5548828..5549006 | 1156..1334 | 865 | 98.9 | Plus |
| 2R | 25286936 | 2R | 5267417..5267669 | 1010..749 | 780 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5267807..5268042 | 324..71 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5539375..5539429 | 16..70 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 5267673..5267723 | 719..669 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:38:49 has no hits.
BS04047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:38 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RD | 262..1575 | 8..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:30 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 827..2132 | 17..1322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:45 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 878..2183 | 17..1322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:38 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 821..2148 | 8..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:35 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 878..2183 | 17..1322 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:35 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5547628..5547924 | 71..367 | 100 | -> | Plus |
| 2R | 5539376..5539429 | 17..70 | 100 | -> | Plus |
| 2R | 5547988..5548775 | 368..1155 | 100 | -> | Plus |
| 2R | 5548828..5548994 | 1156..1322 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:45 Download gff for
BS04047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1426881..1426934 | 17..70 | 100 | -> | Plus |
| arm_2R | 1435133..1435429 | 71..367 | 100 | -> | Plus |
| arm_2R | 1435493..1436280 | 368..1155 | 100 | -> | Plus |
| arm_2R | 1436333..1436499 | 1156..1322 | 100 | | Plus |
BS04047.pep Sequence
Translation from 16 to 1323
> BS04047.pep
MAGEMPIKPWDGLRYAFESCDAMLRDSETKELTKKSFDLAILDGAFPECF
LGLMYDFKIPFMYINTVGFYTGSISTAGNPVSYAITPNFYSRFTDTMNLY
ERAINTAMQIGQTLMHMYVMRRTHLVMREHLGTQIPHPYEMSRNVSFILQ
NGHAVLSYPRAFNPNVAEVACIHCRPARKLPRNLEEFIGASGASGFIYVS
MGSSVKAANMPEALRHMLVKTFARLPYHVLWKYEGSSTDIKDITSNVKLS
RWLPQQDILGHPKLRAFVTHGGLLSMFETVYHGVPVVTMPVFCDHDVNSA
KAEVDGYAIKLDLQTLSANQLYKAIMKVIHNPRYRNSARHRQKLFLDQRS
TALDTAIYWTEYVLRHNGAYHLQTPSRNMTWWQYYLLDVVAVYLILLYVL
ILALRRIDFPYEKVRSLYSLMAPFITIAKTKSKKI*
BS04047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-PE | 524 | CG30438-PE | 90..524 | 1..435 | 2292 | 100 | Plus |
| CG30438-PD | 524 | CG30438-PD | 90..524 | 1..435 | 2292 | 100 | Plus |
| CG30438-PC | 524 | CG30438-PC | 90..524 | 1..435 | 2292 | 100 | Plus |
| CG30438-PB | 524 | CG30438-PB | 90..524 | 1..435 | 2292 | 100 | Plus |
| CG30438-PA | 435 | CG30438-PA | 1..435 | 1..435 | 2292 | 100 | Plus |
