Clone Sequence Records
BS04048.3prime Sequence
892 bp (740 high quality bases) assembled on 2005-12-01
> BS04048.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGGCCAGGCACTGCAAGACGTAGCTG
TAGTCTCCGGAGAGGTCGTCCTTGATCCAGGACTCCAAGCTCTTGCCGTA
CTTGTTCTGGAATGCCTCCTTGATGTCACCCAGATCGATCTCCGACCGGC
TGACAATGATGCGGATCAGCGTCTTGTCCTTGGTGCCCATGCCGGCCATT
GAGTCGTGCAGGCGCTCCGAAAAGTAGTCGATCTTGGACTTGCAGCACTT
GACGATGGCCAGGAAACCCTTCTCCACGGAGCCGCTAAACTCCCGCTTGA
TGGCCTTCTCGATGTCGTTGCCCGACAGATTCTCGTATTCGAGGAAGATC
TGGCGCAGCTGCTGGTAGGAGCGGGTGATCAGGATCGAGTTGAAGGTGGA
CTCATCTGTGCCCCACTGTCCCTCGCCGGCGTCGTGCAGAGCCTGGGCAT
CGGCGATGGCCGCGGCCTCGTCCACGCCCTGGTTCTCATCCCGGTTGCCC
TGGACGAGCGAGACACACAGCCGCTTGAAGTGGCCACTGGTGTCGCCCTT
CAGGTCGGACTCTAGGGACTTGCCGAAGCTCTGCTCGTAGAACTGGGCAA
TGGTCTTGATGCCGTAGTTGGACAGCGTGCAGAGGATCTCGATGATGGCC
TCCTCGTCGGTTCCCAGTCCCGAGATGGCGTCGTGCAGCTCCTGGGCATA
GAACTGGGGCAGCGGCGTCATCAGAGCCAGGATAACATCCTCGAATTTGC
CGCCCAGTTCGGACTTGAGGTCCGAGATCAGGTCCTTGCCGTACGAGGTC
TTGAACGCCTCAGCGATCTCCAAACGCTGGACGATGCCACGCCTGGCCAG
GATCTCGATGATGGCCTTCTCGTCGGTGCCGAAGCCTTTCAT
BS04048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5730-PD | 975 | AnnIX-RD | 100..975 | 892..17 | 4380 | 100 | Minus |
CG5730-PB | 975 | AnnIX-RB | 100..975 | 892..17 | 4380 | 100 | Minus |
CG5730-PA | 975 | AnnIX-RA | 100..923 | 892..69 | 4120 | 100 | Minus |
CG5730-PC | 975 | AnnIX-RC | 100..922 | 892..70 | 4115 | 100 | Minus |
CG9968-PA | 969 | Anxb11-RA | 307..357 | 667..617 | 180 | 94.1 | Minus |
CG9968-PB | 1536 | Anxb11-RB | 874..924 | 667..617 | 180 | 94.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RB | 1184 | CG5730-RB | 169..1044 | 892..17 | 4380 | 100 | Minus |
AnxB9-RD | 1300 | CG5730-RD | 285..1160 | 892..17 | 4380 | 100 | Minus |
AnxB9-RF | 1457 | CG5730-RF | 194..1020 | 892..66 | 4120 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21068138..21068777 | 892..253 | 3200 | 100 | Minus |
3R | 32079331 | 3R | 21068837..21069020 | 253..70 | 920 | 100 | Minus |
3R | 32079331 | 3R | 21070722..21070777 | 72..17 | 280 | 100 | Minus |
X | 23542271 | X | 16418705..16418779 | 617..691 | 225 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 15:24:28 has no hits.
BS04048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:49 Download gff for
BS04048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-PD | 100..975 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:22 Download gff for
BS04048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5730-PB | 100..975 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:13 Download gff for
BS04048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 285..1167 | 9..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:53 Download gff for
BS04048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 285..1167 | 9..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:53 Download gff for
BS04048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21068138..21068777 | 253..892 | 100 | -> | Minus |
3R | 21068838..21069019 | 71..252 | 100 | -> | Minus |
3R | 21070724..21070784 | 9..70 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:13 Download gff for
BS04048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16893860..16894499 | 253..892 | 100 | -> | Minus |
arm_3R | 16894560..16894741 | 71..252 | 100 | -> | Minus |
arm_3R | 16896446..16896506 | 9..70 | 95 | | Minus |
BS04048.5prime Sequence
864 bp (734 high quality bases) assembled on 2005-11-29
> BS04048.5prime
GAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCA
CACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCT
ATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCAT
CGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGG
CGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAA
CTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCC
CCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCG
ACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATC
AAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTC
CGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGC
TCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCC
ATCGCCGATGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCAC
AGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGC
TGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAG
AAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAATGGTTTCCTGGC
CATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGC
ACGACTCAATGGCCGGCATGGGCACCAAGGACAAGACGCTGATCCGCATC
ATTGTCAGCCGGTC
BS04048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5730-PD | 975 | AnnIX-RD | 1..848 | 17..864 | 4215 | 99.8 | Plus |
CG5730-PA | 975 | AnnIX-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
CG5730-PB | 975 | AnnIX-RB | 1..848 | 17..864 | 4215 | 99.8 | Plus |
CG5730-PC | 975 | AnnIX-RC | 1..848 | 17..864 | 4215 | 99.8 | Plus |
CG9968-PA | 969 | Anxb11-RA | 307..357 | 341..391 | 180 | 94.1 | Plus |
CG9968-PB | 1536 | Anxb11-RB | 874..924 | 341..391 | 180 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RF | 1457 | CG5730-RF | 95..942 | 17..864 | 4225 | 99.9 | Plus |
AnxB9-RE | 1456 | CG5730-RE | 94..941 | 17..864 | 4225 | 99.9 | Plus |
AnxB9-RC | 1432 | CG5730-RC | 70..917 | 17..864 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21068067..21068777 | 45..755 | 3540 | 99.9 | Plus |
3R | 32079331 | 3R | 21068837..21068946 | 755..864 | 550 | 100 | Plus |
X | 23542271 | X | 16418705..16418779 | 391..317 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:50:10 has no hits.
BS04048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:50 Download gff for
BS04048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-PC | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:23 Download gff for
BS04048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5730-PC | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:54 Download gff for
BS04048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RC | 62..917 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:00 Download gff for
BS04048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RC | 62..917 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:00 Download gff for
BS04048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21067462..21067499 | 9..46 | 92 | -> | Plus |
3R | 21068069..21068777 | 47..755 | 99 | -> | Plus |
3R | 21068838..21068946 | 756..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:54 Download gff for
BS04048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16893184..16893221 | 9..46 | 92 | -> | Plus |
arm_3R | 16893791..16894499 | 47..755 | 99 | -> | Plus |
arm_3R | 16894560..16894668 | 756..864 | 100 | | Plus |
BS04048.complete Sequence
1007 bp (1007 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634842
> BS04048.complete
GAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCA
CACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCT
ATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCAT
CGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGG
CGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAA
CTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCC
CCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCG
ACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATC
AAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTC
CGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGC
TCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCC
ATCGCCGATGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCAC
AGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGC
TGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAG
AAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGC
CATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGC
ACGACTCAATGGCCGGCATGGGCACCAAGGACAAGACGCTGATCCGCATC
ATTGTCAGCCGGTCGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCA
GAACAAGTACGGCAAGAGCTTGGAGTCCTGGATCAAGGACGACCTCTCCG
GAGACTACAGCTACGTCTTGCAGTGCCTGGCCTCCTACTAAAAGCTTTCT
AGACCAT
BS04048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RB | 975 | CG5730-PB | 1..975 | 17..991 | 4875 | 100 | Plus |
AnxB9-RD | 975 | CG5730-PD | 1..975 | 17..991 | 4875 | 100 | Plus |
AnxB9-RF | 975 | CG5730-PF | 1..926 | 17..942 | 4615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-RB | 1184 | CG5730-RB | 70..1044 | 17..991 | 4875 | 100 | Plus |
AnxB9-RD | 1300 | CG5730-RD | 186..1160 | 17..991 | 4875 | 100 | Plus |
AnxB9-RF | 1457 | CG5730-RF | 95..1020 | 17..942 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21068067..21068777 | 45..755 | 3555 | 100 | Plus |
3R | 32079331 | 3R | 21068837..21069020 | 755..938 | 920 | 100 | Plus |
3R | 32079331 | 3R | 21070722..21070777 | 936..991 | 280 | 100 | Plus |
X | 23542271 | X | 16418705..16418779 | 391..317 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:00:08 has no hits.
BS04048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:47 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-RB | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:26 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-RB | 74..1063 | 9..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:22 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 186..1158 | 17..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:47 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnnIX-RB | 74..1063 | 9..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:08 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB9-RD | 186..1158 | 17..989 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:08 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21067470..21067499 | 17..46 | 100 | -> | Plus |
3R | 21068069..21068777 | 47..755 | 100 | -> | Plus |
3R | 21068838..21069019 | 756..937 | 100 | -> | Plus |
3R | 21070724..21070775 | 938..989 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:22 Download gff for
BS04048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16893192..16893221 | 17..46 | 100 | -> | Plus |
arm_3R | 16893791..16894499 | 47..755 | 100 | -> | Plus |
arm_3R | 16894560..16894741 | 756..937 | 100 | -> | Plus |
arm_3R | 16896446..16896497 | 938..989 | 100 | | Plus |
BS04048.pep Sequence
Translation from 16 to 990
> BS04048.pep
MSSAEYYPFKCTPTVYPADPFDPVEDAAILRKAMKGFGTDEKAIIEILAR
RGIVQRLEIAEAFKTSYGKDLISDLKSELGGKFEDVILALMTPLPQFYAQ
ELHDAISGLGTDEEAIIEILCTLSNYGIKTIAQFYEQSFGKSLESDLKGD
TSGHFKRLCVSLVQGNRDENQGVDEAAAIADAQALHDAGEGQWGTDESTF
NSILITRSYQQLRQIFLEYENLSGNDIEKAIKREFSGSVEKGFLAIVKCC
KSKIDYFSERLHDSMAGMGTKDKTLIRIIVSRSEIDLGDIKEAFQNKYGK
SLESWIKDDLSGDYSYVLQCLASY*
BS04048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB9-PB | 324 | CG5730-PB | 1..324 | 1..324 | 1659 | 100 | Plus |
AnxB9-PD | 324 | CG5730-PD | 1..324 | 1..324 | 1659 | 100 | Plus |
AnxB9-PF | 324 | CG5730-PF | 1..324 | 1..324 | 1600 | 96.6 | Plus |
AnxB9-PE | 324 | CG5730-PE | 1..324 | 1..324 | 1600 | 96.6 | Plus |
AnxB9-PC | 324 | CG5730-PC | 1..324 | 1..324 | 1600 | 96.6 | Plus |