Clone BS04048 Report

Search the DGRC for BS04048

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptAnxB9-RB
Protein status:BS04048.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04048.3prime Sequence

892 bp (740 high quality bases) assembled on 2005-12-01

> BS04048.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGGCCAGGCACTGCAAGACGTAGCTG
TAGTCTCCGGAGAGGTCGTCCTTGATCCAGGACTCCAAGCTCTTGCCGTA
CTTGTTCTGGAATGCCTCCTTGATGTCACCCAGATCGATCTCCGACCGGC
TGACAATGATGCGGATCAGCGTCTTGTCCTTGGTGCCCATGCCGGCCATT
GAGTCGTGCAGGCGCTCCGAAAAGTAGTCGATCTTGGACTTGCAGCACTT
GACGATGGCCAGGAAACCCTTCTCCACGGAGCCGCTAAACTCCCGCTTGA
TGGCCTTCTCGATGTCGTTGCCCGACAGATTCTCGTATTCGAGGAAGATC
TGGCGCAGCTGCTGGTAGGAGCGGGTGATCAGGATCGAGTTGAAGGTGGA
CTCATCTGTGCCCCACTGTCCCTCGCCGGCGTCGTGCAGAGCCTGGGCAT
CGGCGATGGCCGCGGCCTCGTCCACGCCCTGGTTCTCATCCCGGTTGCCC
TGGACGAGCGAGACACACAGCCGCTTGAAGTGGCCACTGGTGTCGCCCTT
CAGGTCGGACTCTAGGGACTTGCCGAAGCTCTGCTCGTAGAACTGGGCAA
TGGTCTTGATGCCGTAGTTGGACAGCGTGCAGAGGATCTCGATGATGGCC
TCCTCGTCGGTTCCCAGTCCCGAGATGGCGTCGTGCAGCTCCTGGGCATA
GAACTGGGGCAGCGGCGTCATCAGAGCCAGGATAACATCCTCGAATTTGC
CGCCCAGTTCGGACTTGAGGTCCGAGATCAGGTCCTTGCCGTACGAGGTC
TTGAACGCCTCAGCGATCTCCAAACGCTGGACGATGCCACGCCTGGCCAG
GATCTCGATGATGGCCTTCTCGTCGGTGCCGAAGCCTTTCAT

BS04048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5730-PD 975 AnnIX-RD 100..975 892..17 4380 100 Minus
CG5730-PB 975 AnnIX-RB 100..975 892..17 4380 100 Minus
CG5730-PA 975 AnnIX-RA 100..923 892..69 4120 100 Minus
CG5730-PC 975 AnnIX-RC 100..922 892..70 4115 100 Minus
CG9968-PA 969 Anxb11-RA 307..357 667..617 180 94.1 Minus
CG9968-PB 1536 Anxb11-RB 874..924 667..617 180 94.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
AnxB9-RB 1184 CG5730-RB 169..1044 892..17 4380 100 Minus
AnxB9-RD 1300 CG5730-RD 285..1160 892..17 4380 100 Minus
AnxB9-RF 1457 CG5730-RF 194..1020 892..66 4120 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21068138..21068777 892..253 3200 100 Minus
3R 32079331 3R 21068837..21069020 253..70 920 100 Minus
3R 32079331 3R 21070722..21070777 72..17 280 100 Minus
X 23542271 X 16418705..16418779 617..691 225 86.7 Plus
Blast to na_te.dros performed on 2015-02-06 15:24:28 has no hits.

BS04048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:49 Download gff for BS04048.3prime
Subject Subject Range Query Range Percent Splice Strand
AnnIX-PD 100..975 17..892 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:22 Download gff for BS04048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5730-PB 100..975 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:13 Download gff for BS04048.3prime
Subject Subject Range Query Range Percent Splice Strand
AnxB9-RD 285..1167 9..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:53 Download gff for BS04048.3prime
Subject Subject Range Query Range Percent Splice Strand
AnxB9-RD 285..1167 9..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:53 Download gff for BS04048.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21068138..21068777 253..892 100 -> Minus
3R 21068838..21069019 71..252 100 -> Minus
3R 21070724..21070784 9..70 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:13 Download gff for BS04048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16893860..16894499 253..892 100 -> Minus
arm_3R 16894560..16894741 71..252 100 -> Minus
arm_3R 16896446..16896506 9..70 95   Minus

BS04048.5prime Sequence

864 bp (734 high quality bases) assembled on 2005-11-29

> BS04048.5prime
GAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCA
CACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCT
ATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCAT
CGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGG
CGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAA
CTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCC
CCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCG
ACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATC
AAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTC
CGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGC
TCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCC
ATCGCCGATGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCAC
AGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGC
TGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAG
AAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAATGGTTTCCTGGC
CATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGC
ACGACTCAATGGCCGGCATGGGCACCAAGGACAAGACGCTGATCCGCATC
ATTGTCAGCCGGTC

BS04048.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5730-PD 975 AnnIX-RD 1..848 17..864 4215 99.8 Plus
CG5730-PA 975 AnnIX-RA 1..848 17..864 4215 99.8 Plus
CG5730-PB 975 AnnIX-RB 1..848 17..864 4215 99.8 Plus
CG5730-PC 975 AnnIX-RC 1..848 17..864 4215 99.8 Plus
CG9968-PA 969 Anxb11-RA 307..357 341..391 180 94.1 Plus
CG9968-PB 1536 Anxb11-RB 874..924 341..391 180 94.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
AnxB9-RF 1457 CG5730-RF 95..942 17..864 4225 99.9 Plus
AnxB9-RE 1456 CG5730-RE 94..941 17..864 4225 99.9 Plus
AnxB9-RC 1432 CG5730-RC 70..917 17..864 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21068067..21068777 45..755 3540 99.9 Plus
3R 32079331 3R 21068837..21068946 755..864 550 100 Plus
X 23542271 X 16418705..16418779 391..317 225 86.7 Minus
Blast to na_te.dros performed on 2015-02-11 11:50:10 has no hits.

BS04048.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:50 Download gff for BS04048.5prime
Subject Subject Range Query Range Percent Splice Strand
AnnIX-PC 1..848 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:23 Download gff for BS04048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5730-PC 1..848 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:54 Download gff for BS04048.5prime
Subject Subject Range Query Range Percent Splice Strand
AnxB9-RC 62..917 9..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:00 Download gff for BS04048.5prime
Subject Subject Range Query Range Percent Splice Strand
AnxB9-RC 62..917 9..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:00 Download gff for BS04048.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21067462..21067499 9..46 92 -> Plus
3R 21068069..21068777 47..755 99 -> Plus
3R 21068838..21068946 756..864 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:54 Download gff for BS04048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16893184..16893221 9..46 92 -> Plus
arm_3R 16893791..16894499 47..755 99 -> Plus
arm_3R 16894560..16894668 756..864 100   Plus

BS04048.complete Sequence

1007 bp (1007 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634842

> BS04048.complete
GAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCA
CACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCT
ATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCAT
CGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGG
CGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAA
CTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCC
CCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCG
ACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATC
AAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTC
CGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGC
TCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCC
ATCGCCGATGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCAC
AGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGC
TGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAG
AAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGC
CATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGC
ACGACTCAATGGCCGGCATGGGCACCAAGGACAAGACGCTGATCCGCATC
ATTGTCAGCCGGTCGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCA
GAACAAGTACGGCAAGAGCTTGGAGTCCTGGATCAAGGACGACCTCTCCG
GAGACTACAGCTACGTCTTGCAGTGCCTGGCCTCCTACTAAAAGCTTTCT
AGACCAT

BS04048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
AnxB9-RB 975 CG5730-PB 1..975 17..991 4875 100 Plus
AnxB9-RD 975 CG5730-PD 1..975 17..991 4875 100 Plus
AnxB9-RF 975 CG5730-PF 1..926 17..942 4615 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
AnxB9-RB 1184 CG5730-RB 70..1044 17..991 4875 100 Plus
AnxB9-RD 1300 CG5730-RD 186..1160 17..991 4875 100 Plus
AnxB9-RF 1457 CG5730-RF 95..1020 17..942 4615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21068067..21068777 45..755 3555 100 Plus
3R 32079331 3R 21068837..21069020 755..938 920 100 Plus
3R 32079331 3R 21070722..21070777 936..991 280 100 Plus
X 23542271 X 16418705..16418779 391..317 225 86.7 Minus
Blast to na_te.dros performed on 2014-11-27 17:00:08 has no hits.

BS04048.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:47 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
AnnIX-RB 1..975 17..991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:26 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
AnnIX-RB 74..1063 9..999 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:22 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
AnxB9-RD 186..1158 17..989 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:47 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
AnnIX-RB 74..1063 9..999 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:08 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
AnxB9-RD 186..1158 17..989 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:08 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21067470..21067499 17..46 100 -> Plus
3R 21068069..21068777 47..755 100 -> Plus
3R 21068838..21069019 756..937 100 -> Plus
3R 21070724..21070775 938..989 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:22 Download gff for BS04048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16893192..16893221 17..46 100 -> Plus
arm_3R 16893791..16894499 47..755 100 -> Plus
arm_3R 16894560..16894741 756..937 100 -> Plus
arm_3R 16896446..16896497 938..989 100   Plus

BS04048.pep Sequence

Translation from 16 to 990

> BS04048.pep
MSSAEYYPFKCTPTVYPADPFDPVEDAAILRKAMKGFGTDEKAIIEILAR
RGIVQRLEIAEAFKTSYGKDLISDLKSELGGKFEDVILALMTPLPQFYAQ
ELHDAISGLGTDEEAIIEILCTLSNYGIKTIAQFYEQSFGKSLESDLKGD
TSGHFKRLCVSLVQGNRDENQGVDEAAAIADAQALHDAGEGQWGTDESTF
NSILITRSYQQLRQIFLEYENLSGNDIEKAIKREFSGSVEKGFLAIVKCC
KSKIDYFSERLHDSMAGMGTKDKTLIRIIVSRSEIDLGDIKEAFQNKYGK
SLESWIKDDLSGDYSYVLQCLASY*

BS04048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
AnxB9-PB 324 CG5730-PB 1..324 1..324 1659 100 Plus
AnxB9-PD 324 CG5730-PD 1..324 1..324 1659 100 Plus
AnxB9-PF 324 CG5730-PF 1..324 1..324 1600 96.6 Plus
AnxB9-PE 324 CG5730-PE 1..324 1..324 1600 96.6 Plus
AnxB9-PC 324 CG5730-PC 1..324 1..324 1600 96.6 Plus