Clone Sequence Records
BS04049.3prime Sequence
903 bp (851 high quality bases) assembled on 2005-12-01
> BS04049.3prime
ATGGTCTAGAAAGCTTCTAAGCCTCGGGCAGCGGCTTCAGCTCCTTTATC
TGCTTGATCAGATAGGCCTTCTCGTCGTTGAACTGCTCGTCCTCGGAGCG
ATCCGTATGGAAGTTGGTCAGAAAGTCGACCAGCTTCGTCTGGTTGCGCA
GCAGGATGTCCAGAATGGGCTTCGGCTTGTTGGGATTGGCCACGAACACC
TTGAAGACGTGAAACGCCTCGAACTGAATGTTGCGCGACTTTTCCTTGAG
CATGTTCATCATTAGCTTGAGGTTCTCCGGCTCGGATATGTAGCGCGTCA
TCACGGTGAAATTGTGCCGGTCCAGCAGCAGTTCCCCAAGCAGCTTCAAG
CTCTGACGCCGCGTCACATAGTTCTCCGAGTTGAGCAGGCGCTGGTAGTG
CTGCGAGAAGAACTTGTCGTAGTTGGCGTCCAGAAACTCCGCGCACAGCA
GCTTATGGCGCGTGAGCAGCTCCTTGAACGTAGAAAAGGCATCGCTGGCA
ATGTCAAAGGTGGAAACCTCCACGTAGCGGAAGAACTTGAAGAACTCATC
CGAGTGCAGCATGATCTTGGCCAGCGCCTCGTACCGGGCGCACTCCCTCA
GCATGGTACCGGAGTTCAGTGCGATCTCCGGATGCGCATCTTCGTAGCCG
GCCATCAGGGTGAACAGGATCTCCGGCTTCGTGCATATATACTCGACGGT
GGGCGAACGGGTGCCAATCTGGCGGCGCAGCACATTATTGAAAATGAGCG
CCACATGCTTCTTGCCCTCGAAATCGATGCGGTGCANGTTCTGGATGAGC
AGCAGCAGCAGGTTGCTGTTGTACAGCTCCTGGGACAGCTGGGCCACCAC
GTAGTCCGCCGGCGGCTCGGCATCGCTGCTACCGTACAGCATGTTCTTGA
TCG
BS04049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4083-PA | 1020 | Mo25-RA | 134..1020 | 903..17 | 4416 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 437..1323 | 903..17 | 4424 | 99.9 | Minus |
| Mo25-RA | 2255 | CG4083-RA | 437..1323 | 903..17 | 4424 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614150..16615036 | 17..903 | 4424 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:30:40 has no hits.
BS04049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:52 Download gff for
BS04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-PA | 134..1020 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:24 Download gff for
BS04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4083-PA | 134..1020 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:18:42 Download gff for
BS04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 437..1323 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:59:58 Download gff for
BS04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 437..1323 | 17..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:59:58 Download gff for
BS04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614150..16615036 | 17..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:18:42 Download gff for
BS04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607250..16608136 | 17..903 | 99 | | Plus |
BS04049.5prime Sequence
809 bp (786 high quality bases) assembled on 2005-12-01
> BS04049.5prime
GAAGTTATCAGTCGACATGCCACTGTTCGGGAAGTCACAGAAGTCGCCAG
TGGAGCTGGTCAAGTCGCTGAAGGAGGCGATCAACGCCCTGGAGGCGGGC
GACCGCAAGGTGGAGAAGGCGCAGGAGGACGTCAGCAAGAACCTGGTCTC
GATCAAGAACATGCTGTACGGTAGCAGCGATGCCGAGCCGCCGGCGGACT
ACGTGGTGGCCCAGCTGTCCCAGGAGCTGTACAACAGCAACCTGCTGCTG
CTGCTCATCCAGAACCTGCACCGCATCGATTTCGAGGGCAAGAAGCATGT
GGCGCTCATTTTCAATAATGTGCTGCGCCGCCAGATTGGCACCCGTTCGC
CCACCGTCGAGTATATATGCACGAAGCCGGAGATCCTGTTCACCCTGATG
GCCGGCTACGAAGATGCGCATCCGGAGATCGCACTGAACTCCGGTACCAT
GCTGAGGGAGTGCGCCCGGTACGAGGCGCTGGCCAAGATCATGCTGCACT
CGGATGAGTTCTTCAAGTTCTTCCGCTACGTGGAGGTTTCCACCTTTGAC
ATTGCCAGCGATGCCTTTTCTACGTTCAAGGAGCTGCTCACGCGCCATAA
GCTGCTGTGCGCGGAGTTTCTGGACGCCAACTACGACAAGTTCTTCTCGC
AGCACTACCAGCGCCTGCTCAACTCGGAGAACTATGTGACGCGGCGTCAG
AGCTTGAAGCTGCTTGGGGAACTGCTGCTGGACCGGCACAATTTCACCGT
GATGACGCGCTACATATCCGAGCCGGAGAACCTCAAGCTAATGATGAACA
TGCTCAAGG
BS04049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4083-PA | 1020 | Mo25-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 300..1096 | 13..809 | 3970 | 99.9 | Plus |
| Mo25-RA | 2255 | CG4083-RA | 300..1096 | 13..809 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614377..16615173 | 809..13 | 3970 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:45:20 has no hits.
BS04049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:53 Download gff for
BS04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:26 Download gff for
BS04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4083-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:30 Download gff for
BS04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1096 | 3..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:18 Download gff for
BS04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1096 | 3..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:18 Download gff for
BS04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614377..16615179 | 3..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:30 Download gff for
BS04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607477..16608279 | 3..809 | 99 | | Minus |
BS04049.complete Sequence
1052 bp (1052 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634843
> BS04049.complete
GAAGTTATCAGTCGACATGCCACTGTTCGGGAAGTCACAGAAGTCGCCAG
TGGAGCTGGTCAAGTCGCTGAAGGAGGCGATCAACGCCCTGGAGGCGGGC
GACCGCAAGGTGGAGAAGGCGCAGGAGGACGTCAGCAAGAACCTGGTCTC
GATCAAGAACATGCTGTACGGTAGCAGCGATGCCGAGCCGCCGGCGGACT
ACGTGGTGGCCCAGCTGTCCCAGGAGCTGTACAACAGCAACCTGCTGCTG
CTGCTCATCCAGAACCTGCACCGCATCGATTTCGAGGGCAAGAAGCATGT
GGCGCTCATTTTCAATAATGTGCTGCGCCGCCAGATTGGCACCCGTTCGC
CCACCGTCGAGTATATATGCACGAAGCCGGAGATCCTGTTCACCCTGATG
GCCGGCTACGAAGATGCGCATCCGGAGATCGCACTGAACTCCGGTACCAT
GCTGAGGGAGTGCGCCCGGTACGAGGCGCTGGCCAAGATCATGCTGCACT
CGGATGAGTTCTTCAAGTTCTTCCGCTACGTGGAGGTTTCCACCTTTGAC
ATTGCCAGCGATGCCTTTTCTACGTTCAAGGAGCTGCTCACGCGCCATAA
GCTGCTGTGCGCGGAGTTTCTGGACGCCAACTACGACAAGTTCTTCTCGC
AGCACTACCAGCGCCTGCTCAACTCGGAGAACTATGTGACGCGGCGTCAG
AGCTTGAAGCTGCTTGGGGAACTGCTGCTGGACCGGCACAATTTCACCGT
GATGACGCGCTACATATCCGAGCCGGAGAACCTCAAGCTAATGATGAACA
TGCTCAAGGAAAAGTCGCGCAACATTCAGTTCGAGGCGTTTCACGTCTTC
AAGGTGTTCGTGGCCAATCCCAACAAGCCGAAGCCCATTCTGGACATCCT
GCTGCGCAACCAGACGAAGCTGGTCGACTTTCTGACCAACTTCCATACGG
ATCGCTCCGAGGACGAGCAGTTCAACGACGAGAAGGCCTATCTGATCAAG
CAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGAAGCTTTCTAGACC
AT
BS04049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1020 | CG4083-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Mo25-RA | 1020 | CG4083-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 300..1323 | 13..1036 | 5105 | 99.9 | Plus |
| Mo25-RA | 2255 | CG4083-RA | 300..1323 | 13..1036 | 5105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614150..16615173 | 1036..13 | 5105 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:03:49 has no hits.
BS04049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:48 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:28 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1323 | 3..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:51 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 304..1323 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:48 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 290..1323 | 3..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:43 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 304..1323 | 17..1036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:43 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614150..16615169 | 17..1036 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:51 Download gff for
BS04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607250..16608269 | 17..1036 | 100 | | Minus |
BS04049.pep Sequence
Translation from 16 to 1035
> BS04049.pep
MPLFGKSQKSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNML
YGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFN
NVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECA
RYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAE
FLDANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYI
SEPENLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQT
KLVDFLTNFHTDRSEDEQFNDEKAYLIKQIKELKPLPEA*
BS04049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-PB | 339 | CG4083-PB | 1..339 | 1..339 | 1728 | 100 | Plus |
| Mo25-PA | 339 | CG4083-PA | 1..339 | 1..339 | 1728 | 100 | Plus |
