Clone Sequence Records
BS04050.3prime Sequence
889 bp (869 high quality bases) assembled on 2005-12-01
> BS04050.3prime
ATGGTCTAGAAAGCTTCTACGTCACGGTGTTATTTAGCTTATCCGCTCCT
CTTAGACGACAGCGCACACAACTTTTGAAATCGGCGTACGAACTGCTGCA
TTTTGTCTTGAAGGAACTGTGCTTTCGGCACAGGTTATCGGTCGTCTGCT
TGGGGCTCATAAAGCGCACTTTCTTTCGACACGGCGATGGGGTTTTTACA
TCCTCTAAGGCAGTTGTGTTGGCACCCAGAAAGGTGTCCTTGCTATAGTC
GTTGCGCAGATGACTCAGCTGCGGGTCGTTCATGTTGATCTCAACCATGG
GCACAGCAACTAGTGGCGTTGCAGCTGGCTGTCTGCTGGCTTCTGGTTCA
TCGTCCAGTAACTCCACCACGCTGTTATCGCTCTGCTCCCTTAGCTCCTG
GCCCATGTCTGTTTCGTAGAAGCCAGCGGTCTGTTCGTCAGGCAGCGGAC
TGCTTAAGTTCATCTTCATCTCATAGGTCGCCTCATTGCGCTTGCGCACA
AAGTACCGTTCCAGTTCGACAAACACGTCGTCAAGAACGCTCAGTCGCAA
CTGCTGCTTGGCTTCGGGTATGATGACCTCTTCGAGTTCCGCCCGCAGCT
CCAGCTCGATTTCCGCCCGCACAGCTTGCTTGCAAGTGCTGAGCAGCTCC
TTTTTATACGCGTCGATCTCGCTGCTAATGAGCTGGGCGGCCTGCTGGCG
CCACTGGGCATTGTTCTCGGCGCAGCCAGTTTGCGTGCATCCTTCCCCGG
AGCCCCGCTCCTCCTCCACTTCACTCAGCTGCGACTTGACACCCTGCCGC
TGCAACGCCTTGTGGCGCCTCAATTTGCGATCGGCTGCGAGGCAGCGTCG
TCGGAAGCAGTGCATCTCCTCCAGTTGCAGCCGACACAT
BS04050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-PB | 1014 | CG31457-RB | 142..1014 | 889..17 | 4340 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1342 | CG31457-RB | 343..1215 | 889..17 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23127105..23127639 | 355..889 | 2660 | 99.8 | Plus |
3R | 32079331 | 3R | 23126708..23127046 | 17..355 | 1695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:27:39 has no hits.
BS04050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:54 Download gff for
BS04050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 142..1014 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:27 Download gff for
BS04050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 142..1014 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:08 Download gff for
BS04050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 343..1215 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:34 Download gff for
BS04050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 343..1215 | 17..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:34 Download gff for
BS04050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23126708..23127045 | 17..354 | 100 | <- | Plus |
3R | 23127105..23127639 | 355..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:08 Download gff for
BS04050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18952430..18952767 | 17..354 | 100 | <- | Plus |
arm_3R | 18952827..18953361 | 355..889 | 99 | | Plus |
BS04050.5prime Sequence
804 bp (780 high quality bases) assembled on 2005-11-29
> BS04050.5prime
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACT
ATAG
BS04050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-PB | 1014 | CG31457-RB | 1..788 | 17..804 | 3915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1342 | CG31457-RB | 200..989 | 15..804 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23127105..23127782 | 692..15 | 3375 | 99.9 | Minus |
3R | 32079331 | 3R | 23126934..23127046 | 804..692 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:48:59 has no hits.
BS04050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:56 Download gff for
BS04050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:29 Download gff for
BS04050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-PB | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:26 Download gff for
BS04050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 197..989 | 12..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:15 Download gff for
BS04050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 197..989 | 12..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:15 Download gff for
BS04050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23126934..23127045 | 693..804 | 100 | <- | Minus |
3R | 23127105..23127785 | 12..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:26 Download gff for
BS04050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18952656..18952767 | 693..804 | 100 | <- | Minus |
arm_3R | 18952827..18953507 | 12..692 | 99 | | Minus |
BS04050.complete Sequence
1046 bp (1046 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634844
> BS04050.complete
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACT
ATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCTTAGAGGATGTA
AAAACCCCATCGCCGTGTCGAAAGAAAGTGCGCTTTATGAGCCCCAAGCA
GACGACCGATAACCTGTGCCGAAAGCACAGTTCCTTCAAGACAAAATGCA
GCAGTTCGTACGCCGATTTCAAAAGTTGTGTGCGCTGTCGTCTAAGAGGA
GCGGATAAGCTAAATAACACCGTGACGTAGAAGCTTTCTAGACCAT
BS04050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1014 | CG31457-PB | 1..1014 | 17..1030 | 5055 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-RB | 1342 | CG31457-RB | 200..1215 | 15..1030 | 5065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23127105..23127782 | 692..15 | 3375 | 99.9 | Minus |
3R | 32079331 | 3R | 23126708..23127046 | 1030..692 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:16:31 has no hits.
BS04050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:33 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 1..1014 | 17..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:07 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 200..1218 | 12..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:10 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 202..1215 | 17..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:33 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 200..1218 | 12..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:53 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31457-RB | 202..1215 | 17..1030 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:53 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23126708..23127045 | 693..1030 | 100 | <- | Minus |
3R | 23127105..23127780 | 17..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:10 Download gff for
BS04050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18952430..18952767 | 693..1030 | 100 | <- | Minus |
arm_3R | 18952827..18953502 | 17..692 | 99 | | Minus |
BS04050.pep Sequence
Translation from 16 to 1029
> BS04050.pep
MNVCRLCLSKEPNFPVFGANGSTALQIMVCTSLEIEPGDGLPQHICTMCR
LQLEEMHCFRRRCLAADRKLRRHKALQRQGVKSQLSEVEEERGSGEGCTQ
TGCAENNAQWRQQAAQLISSEIDAYKKELLSTCKQAVRAEIELELRAELE
EVIIPEAKQQLRLSVLDDVFVELERYFVRKRNEATYEMKMNLSSPLPDEQ
TAGFYETDMGQELREQSDNSVVELLDDEPEASRQPAATPLVAVPMVEINM
NDPQLSHLRNDYSKDTFLGANTTALEDVKTPSPCRKKVRFMSPKQTTDNL
CRKHSSFKTKCSSSYADFKSCVRCRLRGADKLNNTVT*
BS04050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31457-PB | 337 | CG31457-PB | 1..337 | 1..337 | 1751 | 100 | Plus |
CG31365-PA | 639 | CG31365-PA | 13..286 | 3..272 | 187 | 25.7 | Plus |