Clone BS04050 Report

Search the DGRC for BS04050

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG31457-RB
Protein status:BS04050.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04050.3prime Sequence

889 bp (869 high quality bases) assembled on 2005-12-01

> BS04050.3prime
ATGGTCTAGAAAGCTTCTACGTCACGGTGTTATTTAGCTTATCCGCTCCT
CTTAGACGACAGCGCACACAACTTTTGAAATCGGCGTACGAACTGCTGCA
TTTTGTCTTGAAGGAACTGTGCTTTCGGCACAGGTTATCGGTCGTCTGCT
TGGGGCTCATAAAGCGCACTTTCTTTCGACACGGCGATGGGGTTTTTACA
TCCTCTAAGGCAGTTGTGTTGGCACCCAGAAAGGTGTCCTTGCTATAGTC
GTTGCGCAGATGACTCAGCTGCGGGTCGTTCATGTTGATCTCAACCATGG
GCACAGCAACTAGTGGCGTTGCAGCTGGCTGTCTGCTGGCTTCTGGTTCA
TCGTCCAGTAACTCCACCACGCTGTTATCGCTCTGCTCCCTTAGCTCCTG
GCCCATGTCTGTTTCGTAGAAGCCAGCGGTCTGTTCGTCAGGCAGCGGAC
TGCTTAAGTTCATCTTCATCTCATAGGTCGCCTCATTGCGCTTGCGCACA
AAGTACCGTTCCAGTTCGACAAACACGTCGTCAAGAACGCTCAGTCGCAA
CTGCTGCTTGGCTTCGGGTATGATGACCTCTTCGAGTTCCGCCCGCAGCT
CCAGCTCGATTTCCGCCCGCACAGCTTGCTTGCAAGTGCTGAGCAGCTCC
TTTTTATACGCGTCGATCTCGCTGCTAATGAGCTGGGCGGCCTGCTGGCG
CCACTGGGCATTGTTCTCGGCGCAGCCAGTTTGCGTGCATCCTTCCCCGG
AGCCCCGCTCCTCCTCCACTTCACTCAGCTGCGACTTGACACCCTGCCGC
TGCAACGCCTTGTGGCGCCTCAATTTGCGATCGGCTGCGAGGCAGCGTCG
TCGGAAGCAGTGCATCTCCTCCAGTTGCAGCCGACACAT

BS04050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 1014 CG31457-RB 142..1014 889..17 4340 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1342 CG31457-RB 343..1215 889..17 4350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127639 355..889 2660 99.8 Plus
3R 32079331 3R 23126708..23127046 17..355 1695 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:27:39 has no hits.

BS04050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:54 Download gff for BS04050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 142..1014 17..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:27 Download gff for BS04050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 142..1014 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:36:08 Download gff for BS04050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 343..1215 17..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:34 Download gff for BS04050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 343..1215 17..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:34 Download gff for BS04050.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23126708..23127045 17..354 100 <- Plus
3R 23127105..23127639 355..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:36:08 Download gff for BS04050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952430..18952767 17..354 100 <- Plus
arm_3R 18952827..18953361 355..889 99   Plus

BS04050.5prime Sequence

804 bp (780 high quality bases) assembled on 2005-11-29

> BS04050.5prime
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACT
ATAG

BS04050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 1014 CG31457-RB 1..788 17..804 3915 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1342 CG31457-RB 200..989 15..804 3935 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127782 692..15 3375 99.9 Minus
3R 32079331 3R 23126934..23127046 804..692 565 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:48:59 has no hits.

BS04050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:56 Download gff for BS04050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 1..788 17..804 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:29 Download gff for BS04050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-PB 1..788 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:26 Download gff for BS04050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 197..989 12..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:15 Download gff for BS04050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 197..989 12..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:15 Download gff for BS04050.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23126934..23127045 693..804 100 <- Minus
3R 23127105..23127785 12..692 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:26 Download gff for BS04050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952656..18952767 693..804 100 <- Minus
arm_3R 18952827..18953507 12..692 99   Minus

BS04050.complete Sequence

1046 bp (1046 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634844

> BS04050.complete
GAAGTTATCAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAAC
CCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATG
GTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACAT
ATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGAC
GCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGG
CAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGG
GGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCC
AGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAG
CTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCT
GCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGC
GACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTG
CGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCC
GCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGG
AGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAA
CCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCAT
GGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACT
ATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCTTAGAGGATGTA
AAAACCCCATCGCCGTGTCGAAAGAAAGTGCGCTTTATGAGCCCCAAGCA
GACGACCGATAACCTGTGCCGAAAGCACAGTTCCTTCAAGACAAAATGCA
GCAGTTCGTACGCCGATTTCAAAAGTTGTGTGCGCTGTCGTCTAAGAGGA
GCGGATAAGCTAAATAACACCGTGACGTAGAAGCTTTCTAGACCAT

BS04050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1014 CG31457-PB 1..1014 17..1030 5055 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1342 CG31457-RB 200..1215 15..1030 5065 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127782 692..15 3375 99.9 Minus
3R 32079331 3R 23126708..23127046 1030..692 1695 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:16:31 has no hits.

BS04050.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:33 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 17..1030 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:07 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 200..1218 12..1030 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:10 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 202..1215 17..1030 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:33 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 200..1218 12..1030 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:53 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 202..1215 17..1030 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:53 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23126708..23127045 693..1030 100 <- Minus
3R 23127105..23127780 17..692 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:10 Download gff for BS04050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952430..18952767 693..1030 100 <- Minus
arm_3R 18952827..18953502 17..692 99   Minus

BS04050.pep Sequence

Translation from 16 to 1029

> BS04050.pep
MNVCRLCLSKEPNFPVFGANGSTALQIMVCTSLEIEPGDGLPQHICTMCR
LQLEEMHCFRRRCLAADRKLRRHKALQRQGVKSQLSEVEEERGSGEGCTQ
TGCAENNAQWRQQAAQLISSEIDAYKKELLSTCKQAVRAEIELELRAELE
EVIIPEAKQQLRLSVLDDVFVELERYFVRKRNEATYEMKMNLSSPLPDEQ
TAGFYETDMGQELREQSDNSVVELLDDEPEASRQPAATPLVAVPMVEINM
NDPQLSHLRNDYSKDTFLGANTTALEDVKTPSPCRKKVRFMSPKQTTDNL
CRKHSSFKTKCSSSYADFKSCVRCRLRGADKLNNTVT*

BS04050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 337 CG31457-PB 1..337 1..337 1751 100 Plus
CG31365-PA 639 CG31365-PA 13..286 3..272 187 25.7 Plus