Clone BS04051 Report

Search the DGRC for BS04051

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptTif-IA-RA
Protein status:BS04051.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04051.3prime Sequence

971 bp (853 high quality bases) assembled on 2005-12-01

> BS04051.3prime
ATGGTCTAGAAAGCTTTCATGGCGAAGATCCGAAATGAAATTGTTTGTCA
AATTCCTGACTTTTAGACAGATCAAAATTCTTTGGACGTTTGTCGACAAT
TAGGAATTCGTCTTCCTCTAGCATTTCAGAGTCACCACGTTTCCTAGAAT
GCCCGTATTTGTTAGACCCATAGACATACTCATCCGTGTCATTGCTCTGG
TAAACCATATAATTAGTCTCAATATATTTTTTTGATAACTTAAGTACATA
AGGATCGAAGGGAAAAAACGATTCCAGCGTCTCATCGGGCATGCATTTTT
CATGACCGTAAACTGTAGCCAGTTTACGGCGAGCGTTGCGCTCCAAAACA
GTATGACAATAGGCCAGCTGGTAAGTTCTTGTAACACCAGCAAATGCTGT
GGCCACTGGGGCTAAACAATACCGCAGGGGATTTAAATGACACATAGCAA
GGCGCGATAGTTGGAGGGATTGGAGGAAGAGCAAATCTTTTGAACTGGCC
GTCAAATCTTTTGCGCGAAATGCAATTAAATAAAACACAGCTTGGCAAAC
AGAATAGAAAACCAAATTGGCTTTCAGAGAGCAGTTCTGCTTATATGCAT
CGGAGTCATCTATGTATGTATGAGCCCACCTTGTCAACTCTTTTAGGTAG
AAAGTAACAGTGCTAAGCGGCAAAAATCGTGCGCGAGATAAAAAGCTAGC
CATGTATCCCACCGCAGCATGTCGAATTACAGCGGATACATTCGGATTTT
GGACTTTCGTCCATAAGGAATCAAGAAAAGCTTCGGAATATACCGACCGC
AGACTAGTTGCATAAAATAGGATGAATTGCACATGATGCGTGTTGTGGCT
GGGCAATAACACCTCGTCGAACAAATAAAGTAACATCTTAAACAATCGGT
TGGCAGTCTTTCGCTGTTCTTCGCTACTATTTTCATTTAAGCGACATTTG
CCATCAAAAAACTTATAAAGC

BS04051.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3278-PA 1836 Tif-IA-RA 882..1836 971..17 4700 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 2140 CG3278-RA 1105..2059 971..17 4730 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22253377..22253685 971..663 1500 99 Minus
2L 23513712 2L 22257651..22257902 488..237 1260 100 Minus
2L 23513712 2L 22257960..22258179 236..17 1100 100 Minus
2L 23513712 2L 22253742..22253921 666..487 900 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:49:28 has no hits.

BS04051.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:57 Download gff for BS04051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 882..1836 17..971 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:30 Download gff for BS04051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 882..1836 17..971 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:21 Download gff for BS04051.3prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1105..2062 10..971 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:35 Download gff for BS04051.3prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1105..2062 10..971 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:35 Download gff for BS04051.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22253377..22253685 663..971 99 -> Minus
2L 22253746..22253921 487..662 100 -> Minus
2L 22257653..22257902 237..486 100 -> Minus
2L 22257960..22258179 17..236 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:21 Download gff for BS04051.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22253377..22253685 663..971 99 -> Minus
arm_2L 22253746..22253921 487..662 100 -> Minus
arm_2L 22257653..22257902 237..486 100 -> Minus
arm_2L 22257960..22258179 17..236 100 -> Minus

BS04051.5prime Sequence

824 bp (821 high quality bases) assembled on 2005-12-01

> BS04051.5prime
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCT
TGTTTGAAATCGACGATGTATGCG

BS04051.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3278-PA 1836 Tif-IA-RA 1..808 17..824 4040 100 Plus
CG3278-PB 357 Tif-IA-RB 1..328 17..344 1640 100 Plus
CG3278-PB 357 Tif-IA-RB 329..357 406..434 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 2140 CG3278-RA 224..1031 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22250372..22250854 233..715 2415 100 Plus
2L 23513712 2L 22250099..22250315 17..233 1085 100 Plus
2L 23513712 2L 22253194..22253303 715..824 550 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:44:56 has no hits.

BS04051.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:58 Download gff for BS04051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:31 Download gff for BS04051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3278-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:26 Download gff for BS04051.5prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..1031 17..824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:53 Download gff for BS04051.5prime
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..1031 17..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:53 Download gff for BS04051.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22250099..22250314 17..232 100 -> Plus
2L 22250372..22250853 233..714 100 -> Plus
2L 22253194..22253303 715..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:26 Download gff for BS04051.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22250099..22250314 17..232 100 -> Plus
arm_2L 22250372..22250853 233..714 100 -> Plus
arm_2L 22253194..22253303 715..824 100   Plus

BS04051.complete Sequence

1868 bp assembled on 2008-01-02

GenBank Submission: FJ634845

> BS04051.complete
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCT
TGTTTGAAATCGACGATGTATGCGCCGAAAATGTACCCAAATCTGAAAAA
TCTGTGAGTCATCCTGTTGGCAAAACCTTGGATGTATGCCTATTCTTGCT
TTATAAGTTTTTTGATGGCAAATGTCGCCTTAATGAAAATAGTAGCGAAG
AACAGCGAAGGACTGCCAACCGATTGTTTAAGATGTTACTTTATTTGTTC
GACGAGGTGTTATTGCCCAGCCACAACACGCATCATGTGCAATTCATCCT
ATTTTATGCAACTAGTCTGCGGTCGGTATATTCCGAAGCTTTTCTTGATT
CCTTATGGACGAAAGTCCAAAATCCGAATGTATCCGCTGTAATTCGACAT
GCTGCGGTGGGATACATGGCTAGCTTTTTATCTCGCGCACGATTTTTGCC
GCTTAGCACTGTTACTTTCTACCTAAAAGAGTTGACAAGGTGGGCTCATA
CATACATAGATGACTCCGATGCATATAAGCAGAACTGCTCTCTGAAAGCC
AATTTGGTTTTCTATTCTGTTTGCCAAGCTGTGTTTTATTTAATTGCATT
TCGCGCAAAAGATTTGACGGCCAGTTCAAAAGATTTGCTCTTCCTCCAAT
CCCTCCAACTATCGCGCCTTGCTATGTGTCATTTAAATCCCCTGCGGTAT
TGTTTAGCCCCAGTGGCCACAGCATTTGCTGGTGTTACAAGAACTTACCA
GCTGGCCTATTGTCATACTGTTTTGGAGCGCAACGCTCGCCGTAAACTGG
CTACAGTTTACGGTCATGAAAAATGCATGCCCGATGAGACGCTGGAATCG
TTTTTTCCCTTCGATCCTTATGTACTTAAGTTATCAAAAAAATATATTGA
GACTAATTATATGGTTTACCAGAGCAATGACACGGATGAGTATGTCTATG
GGTCTAACAAATACGGGCATTCTAGGAAACGTGGTGACTCTGAAATGCTA
GAGGAAGACGAATTCCTAATTGTCGACAAACGTCCAAAGAATTTTGATCT
GTCTAAAAGTCAGGAATTTGACAAACAATTTCATTTCGGATCTTCGCCAT
GAAAGCTTTCTAGACCAT

BS04051.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 1836 CG3278-PA 1..1836 17..1852 9180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-RA 2140 CG3278-RA 224..2059 17..1852 9180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22253194..22253685 715..1206 2460 100 Plus
2L 23513712 2L 22250372..22250854 233..715 2415 100 Plus
2L 23513712 2L 22257651..22257902 1381..1632 1260 100 Plus
2L 23513712 2L 22257960..22258179 1633..1852 1100 100 Plus
2L 23513712 2L 22250099..22250315 17..233 1085 100 Plus
2L 23513712 2L 22253742..22253921 1203..1382 900 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:20:18 has no hits.

BS04051.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:39 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 17..1852 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:53 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 222..2056 17..1851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:48 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..2058 17..1851 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:40 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 222..2060 17..1859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:24 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 224..2058 17..1851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:24 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22250099..22250314 17..232 100 -> Plus
2L 22257653..22257902 1383..1632 100 -> Plus
2L 22257960..22258178 1633..1851 100   Plus
2L 22250372..22250853 233..714 100 -> Plus
2L 22253194..22253685 715..1206 100 -> Plus
2L 22253746..22253921 1207..1382 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:48 Download gff for BS04051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22250099..22250314 17..232 100 -> Plus
arm_2L 22250372..22250853 233..714 100 -> Plus
arm_2L 22253194..22253685 715..1206 100 -> Plus
arm_2L 22253746..22253921 1207..1382 100 -> Plus
arm_2L 22257653..22257902 1383..1632 100 -> Plus
arm_2L 22257960..22258178 1633..1851 100   Plus

BS04051.pep Sequence

Translation from 16 to 1851

> BS04051.pep
MSFYTSKTDVTSILKTFSGVKRNQANAVAINKVRFSTPKEKGLAESVRVA
LEERNFHLVKEFTYFLREAELSDDEVVIIIKDAKRIVHNLTPEFVTVVEA
LLSLNWKKRSSEIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGDMDE
SDWVHGCPSEHVRNELKPIHKVLDRILTAVPMAFDIIIDAISAKFPYFKK
PYHVTAGYLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAPKDEIELEM
NDEEEKVEADTLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFD
GKCRLNENSSEEQRRTANRLFKMLLYLFDEVLLPSHNTHHVQFILFYATS
LRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLSTVT
FYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRAKDL
TASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCH
TVLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIETNYMV
YQSNDTDEYVYGSNKYGHSRKRGDSEMLEEDEFLIVDKRPKNFDLSKSQE
FDKQFHFGSSP*

BS04051.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-PA 611 CG3278-PA 1..611 1..611 3178 100 Plus