Clone Sequence Records
BS04051.3prime Sequence
971 bp (853 high quality bases) assembled on 2005-12-01
> BS04051.3prime
ATGGTCTAGAAAGCTTTCATGGCGAAGATCCGAAATGAAATTGTTTGTCA
AATTCCTGACTTTTAGACAGATCAAAATTCTTTGGACGTTTGTCGACAAT
TAGGAATTCGTCTTCCTCTAGCATTTCAGAGTCACCACGTTTCCTAGAAT
GCCCGTATTTGTTAGACCCATAGACATACTCATCCGTGTCATTGCTCTGG
TAAACCATATAATTAGTCTCAATATATTTTTTTGATAACTTAAGTACATA
AGGATCGAAGGGAAAAAACGATTCCAGCGTCTCATCGGGCATGCATTTTT
CATGACCGTAAACTGTAGCCAGTTTACGGCGAGCGTTGCGCTCCAAAACA
GTATGACAATAGGCCAGCTGGTAAGTTCTTGTAACACCAGCAAATGCTGT
GGCCACTGGGGCTAAACAATACCGCAGGGGATTTAAATGACACATAGCAA
GGCGCGATAGTTGGAGGGATTGGAGGAAGAGCAAATCTTTTGAACTGGCC
GTCAAATCTTTTGCGCGAAATGCAATTAAATAAAACACAGCTTGGCAAAC
AGAATAGAAAACCAAATTGGCTTTCAGAGAGCAGTTCTGCTTATATGCAT
CGGAGTCATCTATGTATGTATGAGCCCACCTTGTCAACTCTTTTAGGTAG
AAAGTAACAGTGCTAAGCGGCAAAAATCGTGCGCGAGATAAAAAGCTAGC
CATGTATCCCACCGCAGCATGTCGAATTACAGCGGATACATTCGGATTTT
GGACTTTCGTCCATAAGGAATCAAGAAAAGCTTCGGAATATACCGACCGC
AGACTAGTTGCATAAAATAGGATGAATTGCACATGATGCGTGTTGTGGCT
GGGCAATAACACCTCGTCGAACAAATAAAGTAACATCTTAAACAATCGGT
TGGCAGTCTTTCGCTGTTCTTCGCTACTATTTTCATTTAAGCGACATTTG
CCATCAAAAAACTTATAAAGC
BS04051.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3278-PA | 1836 | Tif-IA-RA | 882..1836 | 971..17 | 4700 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 2140 | CG3278-RA | 1105..2059 | 971..17 | 4730 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22253377..22253685 | 971..663 | 1500 | 99 | Minus |
2L | 23513712 | 2L | 22257651..22257902 | 488..237 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 22257960..22258179 | 236..17 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 22253742..22253921 | 666..487 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:49:28 has no hits.
BS04051.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:57 Download gff for
BS04051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 882..1836 | 17..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:30 Download gff for
BS04051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 882..1836 | 17..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:21 Download gff for
BS04051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 1105..2062 | 10..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:35 Download gff for
BS04051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 1105..2062 | 10..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:35 Download gff for
BS04051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22253377..22253685 | 663..971 | 99 | -> | Minus |
2L | 22253746..22253921 | 487..662 | 100 | -> | Minus |
2L | 22257653..22257902 | 237..486 | 100 | -> | Minus |
2L | 22257960..22258179 | 17..236 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:21 Download gff for
BS04051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22253377..22253685 | 663..971 | 99 | -> | Minus |
arm_2L | 22253746..22253921 | 487..662 | 100 | -> | Minus |
arm_2L | 22257653..22257902 | 237..486 | 100 | -> | Minus |
arm_2L | 22257960..22258179 | 17..236 | 100 | -> | Minus |
BS04051.5prime Sequence
824 bp (821 high quality bases) assembled on 2005-12-01
> BS04051.5prime
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCT
TGTTTGAAATCGACGATGTATGCG
BS04051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3278-PA | 1836 | Tif-IA-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
CG3278-PB | 357 | Tif-IA-RB | 1..328 | 17..344 | 1640 | 100 | Plus |
CG3278-PB | 357 | Tif-IA-RB | 329..357 | 406..434 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 2140 | CG3278-RA | 224..1031 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22250372..22250854 | 233..715 | 2415 | 100 | Plus |
2L | 23513712 | 2L | 22250099..22250315 | 17..233 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 22253194..22253303 | 715..824 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:44:56 has no hits.
BS04051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:58 Download gff for
BS04051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:31 Download gff for
BS04051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3278-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:26 Download gff for
BS04051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..1031 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:53 Download gff for
BS04051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..1031 | 17..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:53 Download gff for
BS04051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
2L | 22253194..22253303 | 715..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:26 Download gff for
BS04051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
arm_2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
arm_2L | 22253194..22253303 | 715..824 | 100 | | Plus |
BS04051.complete Sequence
1868 bp assembled on 2008-01-02
GenBank Submission: FJ634845
> BS04051.complete
GAAGTTATCAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTT
CCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTG
GCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGA
ATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGT
TCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATA
ATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGT
AACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAG
AGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCAT
AATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCC
TGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACG
TGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACT
GCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATT
CCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACG
TGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAA
CTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGA
AATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCT
TGTTTGAAATCGACGATGTATGCGCCGAAAATGTACCCAAATCTGAAAAA
TCTGTGAGTCATCCTGTTGGCAAAACCTTGGATGTATGCCTATTCTTGCT
TTATAAGTTTTTTGATGGCAAATGTCGCCTTAATGAAAATAGTAGCGAAG
AACAGCGAAGGACTGCCAACCGATTGTTTAAGATGTTACTTTATTTGTTC
GACGAGGTGTTATTGCCCAGCCACAACACGCATCATGTGCAATTCATCCT
ATTTTATGCAACTAGTCTGCGGTCGGTATATTCCGAAGCTTTTCTTGATT
CCTTATGGACGAAAGTCCAAAATCCGAATGTATCCGCTGTAATTCGACAT
GCTGCGGTGGGATACATGGCTAGCTTTTTATCTCGCGCACGATTTTTGCC
GCTTAGCACTGTTACTTTCTACCTAAAAGAGTTGACAAGGTGGGCTCATA
CATACATAGATGACTCCGATGCATATAAGCAGAACTGCTCTCTGAAAGCC
AATTTGGTTTTCTATTCTGTTTGCCAAGCTGTGTTTTATTTAATTGCATT
TCGCGCAAAAGATTTGACGGCCAGTTCAAAAGATTTGCTCTTCCTCCAAT
CCCTCCAACTATCGCGCCTTGCTATGTGTCATTTAAATCCCCTGCGGTAT
TGTTTAGCCCCAGTGGCCACAGCATTTGCTGGTGTTACAAGAACTTACCA
GCTGGCCTATTGTCATACTGTTTTGGAGCGCAACGCTCGCCGTAAACTGG
CTACAGTTTACGGTCATGAAAAATGCATGCCCGATGAGACGCTGGAATCG
TTTTTTCCCTTCGATCCTTATGTACTTAAGTTATCAAAAAAATATATTGA
GACTAATTATATGGTTTACCAGAGCAATGACACGGATGAGTATGTCTATG
GGTCTAACAAATACGGGCATTCTAGGAAACGTGGTGACTCTGAAATGCTA
GAGGAAGACGAATTCCTAATTGTCGACAAACGTCCAAAGAATTTTGATCT
GTCTAAAAGTCAGGAATTTGACAAACAATTTCATTTCGGATCTTCGCCAT
GAAAGCTTTCTAGACCAT
BS04051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 1836 | CG3278-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-RA | 2140 | CG3278-RA | 224..2059 | 17..1852 | 9180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22253194..22253685 | 715..1206 | 2460 | 100 | Plus |
2L | 23513712 | 2L | 22250372..22250854 | 233..715 | 2415 | 100 | Plus |
2L | 23513712 | 2L | 22257651..22257902 | 1381..1632 | 1260 | 100 | Plus |
2L | 23513712 | 2L | 22257960..22258179 | 1633..1852 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 22250099..22250315 | 17..233 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 22253742..22253921 | 1203..1382 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:20:18 has no hits.
BS04051.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:39 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 1..1836 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:53 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 222..2056 | 17..1851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:48 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..2058 | 17..1851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:40 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 222..2060 | 17..1859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:24 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tif-IA-RA | 224..2058 | 17..1851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:24 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
2L | 22257653..22257902 | 1383..1632 | 100 | -> | Plus |
2L | 22257960..22258178 | 1633..1851 | 100 | | Plus |
2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
2L | 22253194..22253685 | 715..1206 | 100 | -> | Plus |
2L | 22253746..22253921 | 1207..1382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:48 Download gff for
BS04051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22250099..22250314 | 17..232 | 100 | -> | Plus |
arm_2L | 22250372..22250853 | 233..714 | 100 | -> | Plus |
arm_2L | 22253194..22253685 | 715..1206 | 100 | -> | Plus |
arm_2L | 22253746..22253921 | 1207..1382 | 100 | -> | Plus |
arm_2L | 22257653..22257902 | 1383..1632 | 100 | -> | Plus |
arm_2L | 22257960..22258178 | 1633..1851 | 100 | | Plus |
BS04051.pep Sequence
Translation from 16 to 1851
> BS04051.pep
MSFYTSKTDVTSILKTFSGVKRNQANAVAINKVRFSTPKEKGLAESVRVA
LEERNFHLVKEFTYFLREAELSDDEVVIIIKDAKRIVHNLTPEFVTVVEA
LLSLNWKKRSSEIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGDMDE
SDWVHGCPSEHVRNELKPIHKVLDRILTAVPMAFDIIIDAISAKFPYFKK
PYHVTAGYLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAPKDEIELEM
NDEEEKVEADTLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFD
GKCRLNENSSEEQRRTANRLFKMLLYLFDEVLLPSHNTHHVQFILFYATS
LRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLSTVT
FYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRAKDL
TASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCH
TVLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIETNYMV
YQSNDTDEYVYGSNKYGHSRKRGDSEMLEEDEFLIVDKRPKNFDLSKSQE
FDKQFHFGSSP*
BS04051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tif-IA-PA | 611 | CG3278-PA | 1..611 | 1..611 | 3178 | 100 | Plus |