Clone Sequence Records
BS04053.5prime Sequence
403 bp (318 high quality bases) assembled on 2005-12-01
> BS04053.5prime
GAAGTTATCAGTCGACATGGTTGACTACTATAAAATTTTGGATGTTTCGC
GATCCGCTACCGATAGTGAAGTGAAGAAGGCATATCGAAAACTGGCACTA
AAATGGCACCCAGACAAGAATCCCGACAACCTGGATGAGGCCAACAAACG
CTTCCGCGAGCTGTCCGAAGCCTACGAAGTTCTTTCCGATGAGAAAAAGC
GTCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAG
AGTCGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTT
CGATATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGT
TCCGTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGAT
GCC
BS04053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8448-PD | 780 | mrj-RD | 1..387 | 17..403 | 1935 | 100 | Plus |
| CG8448-PB | 780 | mrj-RB | 1..387 | 17..403 | 1935 | 100 | Plus |
| CG8448-PC | 780 | mrj-RC | 1..387 | 17..403 | 1935 | 100 | Plus |
| CG8448-PA | 780 | mrj-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 1929 | CG8448-RA | 180..568 | 15..403 | 1945 | 100 | Plus |
| mrj-RC | 2143 | CG8448-RC | 394..782 | 15..403 | 1945 | 100 | Plus |
| mrj-RB | 2126 | CG8448-RB | 377..765 | 15..403 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204825..16205032 | 398..191 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 16205710..16205819 | 191..82 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 16205901..16205967 | 81..15 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:08:26 has no hits.
BS04053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:00 Download gff for
BS04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-PC | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:34 Download gff for
BS04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8448-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:23 Download gff for
BS04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 370..765 | 7..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:57 Download gff for
BS04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 370..765 | 7..403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:57 Download gff for
BS04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204820..16205031 | 192..403 | 98 | <- | Minus |
| 2R | 16205710..16205819 | 82..191 | 100 | <- | Minus |
| 2R | 16205901..16205974 | 7..81 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:23 Download gff for
BS04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12092325..12092536 | 192..403 | 98 | <- | Minus |
| arm_2R | 12093215..12093324 | 82..191 | 100 | <- | Minus |
| arm_2R | 12093406..12093479 | 7..81 | 96 | | Minus |
BS04053.3prime Sequence
417 bp (406 high quality bases) assembled on 2005-09-08
> BS04053.3prime
ATGGTCTAGAAAGCTTCTATTGAAGGGAGCCCATCACAGTCTTTGATTTC
ACAACATCATTTTCATATGAAAAGACAGTTTCCTTGCCGTTTTCGACGAC
CCGTTTGGTCATCAGTTTCTTGCCATTCACAAACACCGTCGAAGTGGAGG
TGCGCTTGACACTGGCACCGGGTCCGCTGGAGATGTGGGTGACACCGCTG
CTGCCATTGCCGTGGGTCATCGACGAGAACGAGGTGAAGCCGCTGGTGGG
CATAAAGAAGTCCATCATTGAGTAGTTAAGCATTGGAGCCCCGAACGGAC
TGGCCACTTTGTGCTGGTGGTGATGATGATGGTGGCGAGATGATCCACTG
CTGCCGCCATTGCGTCGACTGCCACTCGAGCCGCTTGTGCTGCCATTCGA
ATGTCCATTGGCATCTC
BS04053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8448-PD | 780 | mrj-RD | 380..780 | 417..17 | 1980 | 99.7 | Minus |
| CG8448-PB | 780 | mrj-RB | 380..780 | 417..17 | 1980 | 99.7 | Minus |
| CG8448-PC | 780 | mrj-RC | 380..780 | 417..17 | 1980 | 99.7 | Minus |
| CG8448-PA | 780 | mrj-RA | 380..780 | 417..17 | 1980 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RG | 2499 | CG8448-RG | 1131..1531 | 417..17 | 1990 | 99.8 | Minus |
| mrj-RF | 2112 | CG8448-RF | 744..1144 | 417..17 | 1990 | 99.8 | Minus |
| mrj-RH | 2274 | CG8448-RH | 906..1306 | 417..17 | 1990 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 101..416 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 16204297..16204382 | 17..102 | 415 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:14:29 has no hits.
BS04053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:38:59 Download gff for
BS04053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-PC | 380..780 | 17..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:33 Download gff for
BS04053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8448-PA | 380..780 | 17..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:23 Download gff for
BS04053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RH | 906..1308 | 12..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:48 Download gff for
BS04053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RH | 906..1308 | 12..417 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:48 Download gff for
BS04053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204442..16204756 | 102..417 | 99 | | Plus |
| 2R | 16204295..16204381 | 12..101 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:23 Download gff for
BS04053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091800..12091886 | 12..101 | 95 | <- | Plus |
| arm_2R | 12091947..12092261 | 102..417 | 99 | | Plus |
BS04053.complete Sequence
812 bp assembled on 2008-01-02
GenBank Submission: FJ634846
> BS04053.complete
GAAGTTATCAGTCGACATGGTTGACTACTATAAAATTTTGGATGTTTCGC
GATCCGCTACCGATAGTGAAGTGAAGAAGGCATATCGAAAACTGGCACTA
AAATGGCACCCAGACAAGAATCCCGACAACCTGGATGAGGCCAACAAACG
CTTCCGCGAGCTGTCCGAAGCCTACGAAGTTCTTTCCGATGAGAAAAAGC
GTCGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAG
AGTCGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTT
CGATATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGT
TCCGTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGAT
GCCAATGGACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGACG
CAATGGCGGCAGCAGTGGATCATCTCGCCACCATCATCATCACCACCAGC
ACAAAGTGGCCAGTCCGTTCGGGGCTCCAATGCTTAACTACTCAATGATG
GACTTCTTTATGCCCACCAGCGGCTTCACCTCGTTCTCGTCGATGACCCA
CGGCAATGGCAGCAGCGGTGTCACCCACATCTCCAGCGGACCCGGTGCCA
GTGTCAAGCGCACCTCCACTTCGACGGTGTTTGTGAATGGCAAGAAACTG
ATGACCAAACGGGTCGTCGAAAACGGCAAGGAAACTGTCTTTTCATATGA
AAATGATGTTCTGAAATCAAAGACTGTGATGGGCTCCCTTCAATAGAAGC
TTTCTAGACCAT
BS04053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 780 | CG8448-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
| mrj-RC | 780 | CG8448-PC | 1..780 | 17..796 | 3900 | 100 | Plus |
| mrj-RB | 780 | CG8448-PB | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 1929 | CG8448-RA | 180..961 | 15..796 | 3910 | 100 | Plus |
| mrj-RC | 2143 | CG8448-RC | 394..1175 | 15..796 | 3910 | 100 | Plus |
| mrj-RB | 2126 | CG8448-RB | 377..1158 | 15..796 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 712..397 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 16204825..16205032 | 398..191 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 16205710..16205819 | 191..82 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 16204297..16204382 | 796..711 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 16205901..16205967 | 81..15 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:50 has no hits.
BS04053.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:40 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:39 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 325..1104 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:47 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 379..1158 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:41 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 316..1106 | 7..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:17 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 379..1158 | 17..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:17 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16205710..16205819 | 82..191 | 100 | <- | Minus |
| 2R | 16205901..16205965 | 17..81 | 100 | | Minus |
| 2R | 16204297..16204381 | 712..796 | 100 | <- | Minus |
| 2R | 16204442..16204754 | 399..711 | 100 | <- | Minus |
| 2R | 16204825..16205031 | 192..398 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:47 Download gff for
BS04053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091802..12091886 | 712..796 | 100 | <- | Minus |
| arm_2R | 12091947..12092259 | 399..711 | 100 | <- | Minus |
| arm_2R | 12092330..12092536 | 192..398 | 100 | <- | Minus |
| arm_2R | 12093215..12093324 | 82..191 | 100 | <- | Minus |
| arm_2R | 12093406..12093470 | 17..81 | 100 | | Minus |
BS04053.pep Sequence
Translation from 16 to 795
> BS04053.pep
MVDYYKILDVSRSATDSEVKKAYRKLALKWHPDKNPDNLDEANKRFRELS
EAYEVLSDEKKRRIYDEYGKDGLGDRGQSRSHARHHYSTHDFDDFDILGG
FQFAFRPPEEVFREFFGIHSPFADLFRDANGHSNGSTSGSSGSRRNGGSS
GSSRHHHHHHQHKVASPFGAPMLNYSMMDFFMPTSGFTSFSSMTHGNGSS
GVTHISSGPGASVKRTSTSTVFVNGKKLMTKRVVENGKETVFSYENDVLK
SKTVMGSLQ*
BS04053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-PA | 259 | CG8448-PA | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PC | 259 | CG8448-PC | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PB | 259 | CG8448-PB | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PD | 259 | CG8448-PD | 1..259 | 1..259 | 1376 | 100 | Plus |
| mrj-PF | 208 | CG8448-PF | 2..208 | 53..259 | 1076 | 97.6 | Plus |
