Clone BS04054 Report

Search the DGRC for BS04054

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG12659-RC
Protein status:BS04054.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04054.3prime Sequence

355 bp (354 high quality bases) assembled on 2005-09-08

> BS04054.3prime
ATGGTCTAGAAAGCTTCTATCCCACGGCGCTGGTATAGCCGCGCACCATG
GGGTAGCCATTGACGATGTCCGAGGGCATGTGCTGCATGGACGCGTACTC
GTCGGCGCTGGCGAACCTTAGTTTCGTGTGCGGATCGGCATAAGGAGCGG
GCAGACCGCTGATATCCGAGTACTTCTTGGCCGGAACCAACGAGGGCGGT
GCATTGAGCGTGAAGTAGGTGGGTTGTTCGGCGGACAGCTTCTGGCTACG
CTCCATGTTGCTTATCTGACGTAGAGGGCGGTAAACACAGTTCTTTGGAA
AGGTAAACGGACGCTTAAAGGAGCGTTTAGGCTTCGCATTTTGTTCCATG
TCGAC

BS04054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-PB 333 CG12659-RB 1..333 349..17 1640 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-RC 896 CG12659-RC 36..368 349..17 1650 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8591303..8591502 17..216 985 99.5 Plus
X 23542271 X 8591562..8591694 217..349 665 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:30:55 has no hits.

BS04054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:01 Download gff for BS04054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-PB 1..333 17..349 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:36 Download gff for BS04054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-PB 1..333 17..349 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:41:59 Download gff for BS04054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-RC 29..371 10..355 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:53 Download gff for BS04054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-RC 29..371 10..355 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:43:53 Download gff for BS04054.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8591562..8591699 217..355 97   Plus
X 8591300..8591502 10..216 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:41:59 Download gff for BS04054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8485333..8485535 10..216 97 <- Plus
arm_X 8485595..8485732 217..355 97   Plus

BS04054.5prime Sequence

363 bp (362 high quality bases) assembled on 2005-11-29

> BS04054.5prime
GAAGTTATCAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTA
AGCGTCCGTTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAG
ATAAGCAACATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTA
CTTCACGCTCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGG
ATATCAGCGGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGG
TTCGCCAGCGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACAT
CGTCAATGGCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGATAGA
AGCTTTCTAGACC

BS04054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-PB 333 CG12659-RB 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-RC 896 CG12659-RC 36..368 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8591303..8591502 349..150 1000 100 Minus
X 23542271 X 8591562..8591694 149..17 665 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:00:06 has no hits.

BS04054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:02 Download gff for BS04054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-PB 1..333 17..349 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:37 Download gff for BS04054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-PB 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:27 Download gff for BS04054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-RC 36..371 17..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:45 Download gff for BS04054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12659-RC 36..371 17..356 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:46:45 Download gff for BS04054.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8591300..8591502 150..356 98 <- Minus
X 8591562..8591694 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:27 Download gff for BS04054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8485333..8485535 150..356 98 <- Minus
arm_X 8485595..8485727 17..149 100   Minus

BS04054.complete Sequence

365 bp (365 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634847

> BS04054.complete
GAAGTTATCAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTA
AGCGTCCGTTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAG
ATAAGCAACATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTA
CTTCACGCTCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGG
ATATCAGCGGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGG
TTCGCCAGCGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACAT
CGTCAATGGCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGATAGA
AGCTTTCTAGACCAT

BS04054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-RC 333 CG12659-PC 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-RC 896 CG12659-RC 36..368 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8591303..8591502 349..150 1000 100 Minus
X 23542271 X 8591562..8591694 149..17 665 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:33 has no hits.

BS04054.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:24 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG12659-RB 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:26 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG12659-RB 298..633 17..356 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:16 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG12659-RC 36..368 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:24 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG12659-RB 298..633 17..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:44 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG12659-RC 36..368 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:44 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
X 8591303..8591502 150..349 100 <- Minus
X 8591562..8591694 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:16 Download gff for BS04054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8485336..8485535 150..349 100 <- Minus
arm_X 8485595..8485727 17..149 100   Minus

BS04054.pep Sequence

Translation from 16 to 348

> BS04054.pep
MEQNAKPKRSFKRPFTFPKNCVYRPLRQISNMERSQKLSAEQPTYFTLNA
PPSLVPAKKYSDISGLPAPYADPHTKLRFASADEYASMQHMPSDIVNGYL
MVRGYTSAVG*

BS04054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12659-PC 110 CG12659-PC 1..110 1..110 580 100 Plus