Clone Sequence Records
BS04054.3prime Sequence
355 bp (354 high quality bases) assembled on 2005-09-08
> BS04054.3prime
ATGGTCTAGAAAGCTTCTATCCCACGGCGCTGGTATAGCCGCGCACCATG
GGGTAGCCATTGACGATGTCCGAGGGCATGTGCTGCATGGACGCGTACTC
GTCGGCGCTGGCGAACCTTAGTTTCGTGTGCGGATCGGCATAAGGAGCGG
GCAGACCGCTGATATCCGAGTACTTCTTGGCCGGAACCAACGAGGGCGGT
GCATTGAGCGTGAAGTAGGTGGGTTGTTCGGCGGACAGCTTCTGGCTACG
CTCCATGTTGCTTATCTGACGTAGAGGGCGGTAAACACAGTTCTTTGGAA
AGGTAAACGGACGCTTAAAGGAGCGTTTAGGCTTCGCATTTTGTTCCATG
TCGAC
BS04054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-PB | 333 | CG12659-RB | 1..333 | 349..17 | 1640 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 896 | CG12659-RC | 36..368 | 349..17 | 1650 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8591303..8591502 | 17..216 | 985 | 99.5 | Plus |
X | 23542271 | X | 8591562..8591694 | 217..349 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:30:55 has no hits.
BS04054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:01 Download gff for
BS04054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 17..349 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:36 Download gff for
BS04054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 17..349 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:41:59 Download gff for
BS04054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 29..371 | 10..355 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:53 Download gff for
BS04054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 29..371 | 10..355 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:43:53 Download gff for
BS04054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8591562..8591699 | 217..355 | 97 | | Plus |
X | 8591300..8591502 | 10..216 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:41:59 Download gff for
BS04054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8485333..8485535 | 10..216 | 97 | <- | Plus |
arm_X | 8485595..8485732 | 217..355 | 97 | | Plus |
BS04054.5prime Sequence
363 bp (362 high quality bases) assembled on 2005-11-29
> BS04054.5prime
GAAGTTATCAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTA
AGCGTCCGTTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAG
ATAAGCAACATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTA
CTTCACGCTCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGG
ATATCAGCGGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGG
TTCGCCAGCGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACAT
CGTCAATGGCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGATAGA
AGCTTTCTAGACC
BS04054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-PB | 333 | CG12659-RB | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 896 | CG12659-RC | 36..368 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8591303..8591502 | 349..150 | 1000 | 100 | Minus |
X | 23542271 | X | 8591562..8591694 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:00:06 has no hits.
BS04054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:02 Download gff for
BS04054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:37 Download gff for
BS04054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-PB | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:27 Download gff for
BS04054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..371 | 17..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:45 Download gff for
BS04054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..371 | 17..356 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:46:45 Download gff for
BS04054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8591300..8591502 | 150..356 | 98 | <- | Minus |
X | 8591562..8591694 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:27 Download gff for
BS04054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8485333..8485535 | 150..356 | 98 | <- | Minus |
arm_X | 8485595..8485727 | 17..149 | 100 | | Minus |
BS04054.complete Sequence
365 bp (365 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634847
> BS04054.complete
GAAGTTATCAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTA
AGCGTCCGTTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAG
ATAAGCAACATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTA
CTTCACGCTCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGG
ATATCAGCGGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGG
TTCGCCAGCGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACAT
CGTCAATGGCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGATAGA
AGCTTTCTAGACCAT
BS04054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 333 | CG12659-PC | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-RC | 896 | CG12659-RC | 36..368 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8591303..8591502 | 349..150 | 1000 | 100 | Minus |
X | 23542271 | X | 8591562..8591694 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:33 has no hits.
BS04054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:24 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RB | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:26 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RB | 298..633 | 17..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:16 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..368 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:24 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RB | 298..633 | 17..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:44 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12659-RC | 36..368 | 17..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:44 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8591303..8591502 | 150..349 | 100 | <- | Minus |
X | 8591562..8591694 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:16 Download gff for
BS04054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8485336..8485535 | 150..349 | 100 | <- | Minus |
arm_X | 8485595..8485727 | 17..149 | 100 | | Minus |
BS04054.pep Sequence
Translation from 16 to 348
> BS04054.pep
MEQNAKPKRSFKRPFTFPKNCVYRPLRQISNMERSQKLSAEQPTYFTLNA
PPSLVPAKKYSDISGLPAPYADPHTKLRFASADEYASMQHMPSDIVNGYL
MVRGYTSAVG*
BS04054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12659-PC | 110 | CG12659-PC | 1..110 | 1..110 | 580 | 100 | Plus |