Clone Sequence Records
BS04056.3prime Sequence
851 bp (817 high quality bases) assembled on 2005-12-01
> BS04056.3prime
ATGGTCTAGAAAGCTTTCACTTCAGCGGAAGTCCATTTATCAATAAACTA
TTATCAGCGCTTAATTCTTTTGGTCCTTCACCGACTTTCGTGTGGATTAT
ATATCTGAAAGCATTTTTAGCATGAACATCTAGTGAATCCAACTTGCTGC
TCTCAGCATCTTGCACTTTTGGAATGGGAAGGCCTCGCAAGTAGGTGCCA
CCATCCGCTAAATCATTGGGGAACACCTTTTGGATAGCGCTCAAGAGATG
CGGAACGTGCTCCGCCAGGACATAGAGGCATGCATTTGGACCAGCATCGA
AGGTGTACGCGGCATGATAGCTACCCATTCGTTCGTTATAATCGTGAACG
AAGGACACGATACTGTGCGACACATCGTTCATGTAGACACACGGCGGATA
GGTGTCCAGGGCGATGGCATGGAACTGATTCGAGTCCTTCATCGTTATCT
CGGCGAATGCCTGAAAGTCATGGCTTGCGATGGCCTCCCTCAATCGGATA
ATCCGGTCGGGAACCACTTGATCCACGCGATGTTTGATCAACTGAGACGT
CTTCACCGCCTGTTGCATGCCCCTTGTCGAGGCAGTCTTCTTGCGTGCAT
CGTTAACGACCAGGATGAGCACATGCATGTTGGGCCAGTGGTCGGATGGA
GCTATTTGCCTCGCCACCGAATCGCTGCCATCATCCAGAGCTCCGCGATG
CCACTGCACAAAACCGCCATACAGACTGCGACATGCCGATCCACTTCCTT
GCCGCGCCACCGTCGTCAGCTCCTCATTCAGCGGTATATCGTAGAGTCGG
GACAGGGAGTACACCAGGCAAGCGTAGCCAGCTGCACTGGATGCCAGTCC
G
BS04056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PA | 1167 | CG8239-RA | 333..1167 | 851..17 | 4150 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 419..1253 | 851..17 | 4160 | 99.9 | Minus |
CG8239-RA | 1538 | CG8239-RA | 419..1253 | 851..17 | 4160 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750101..15750935 | 851..17 | 4160 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:33:24 has no hits.
BS04056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:05 Download gff for
BS04056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 333..1167 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:41 Download gff for
BS04056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 333..1167 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:36 Download gff for
BS04056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 419..1253 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:29 Download gff for
BS04056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 419..1253 | 17..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:29 Download gff for
BS04056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15750101..15750935 | 17..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:36 Download gff for
BS04056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15644134..15644968 | 17..851 | 99 | | Minus |
BS04056.5prime Sequence
782 bp (740 high quality bases) assembled on 2005-12-01
> BS04056.5prime
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTTCCATG
BS04056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PA | 1167 | CG8239-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 85..852 | 15..782 | 3840 | 100 | Plus |
CG8239-RA | 1538 | CG8239-RA | 85..852 | 15..782 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750008..15750534 | 256..782 | 2635 | 100 | Plus |
X | 23542271 | X | 15749830..15749949 | 138..257 | 600 | 100 | Plus |
X | 23542271 | X | 15749365..15749435 | 69..139 | 355 | 100 | Plus |
X | 23542271 | X | 15749250..15749304 | 15..69 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:45:08 has no hits.
BS04056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:06 Download gff for
BS04056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:43 Download gff for
BS04056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:28 Download gff for
BS04056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 81..852 | 8..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:33 Download gff for
BS04056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 81..852 | 8..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:33 Download gff for
BS04056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15749246..15749303 | 8..68 | 93 | -> | Plus |
X | 15749365..15749435 | 69..139 | 100 | -> | Plus |
X | 15749832..15749949 | 140..257 | 100 | -> | Plus |
X | 15750010..15750534 | 258..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:28 Download gff for
BS04056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15643279..15643336 | 8..68 | 93 | -> | Plus |
arm_X | 15643398..15643468 | 69..139 | 100 | -> | Plus |
arm_X | 15643865..15643982 | 140..257 | 100 | -> | Plus |
arm_X | 15644043..15644567 | 258..782 | 100 | | Plus |
BS04056.complete Sequence
1199 bp assembled on 2007-10-17
GenBank Submission: FJ634848
> BS04056.complete
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTTCCATGCCATCGCCCTGGACACCT
ATCCGCCGTGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTC
GTTCACGATTATAACGAACGAATGGGTAGCTATCATGCCGCGTACACCTT
CGATGCTGGTCCAAATGCATGCCTCTATGTCCTGGCGGAGCACGTTCCGC
ATCTCTTGAGCGCTATCCAAAAGGTGTTCCCCAATGATTTAGCGGATGGT
GGCACCTACTTGCGAGGCCTTCCCATTCCAAAAGTGCAAGATGCTGAGAG
CAGCAAGTTGGATTCACTAGATGTTCATGCTAAAAATGCTTTCAGATATA
TAATCCACACGAAAGTCGGTGAAGGACCAAAAGAATTAAGCGCTGATAAT
AGTTTATTGATAAATGGACTTCCGCTGAAGTGAAAGCTTTCTAGACCAT
BS04056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 1167 | CG8239-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
CG8239-RA | 1167 | CG8239-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 85..1253 | 15..1183 | 5845 | 100 | Plus |
CG8239-RA | 1538 | CG8239-RA | 85..1253 | 15..1183 | 5845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750008..15750935 | 256..1183 | 4640 | 100 | Plus |
X | 23542271 | X | 15749830..15749949 | 138..257 | 600 | 100 | Plus |
X | 23542271 | X | 15749365..15749435 | 69..139 | 355 | 100 | Plus |
X | 23542271 | X | 15749250..15749304 | 15..69 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:11:26 has no hits.
BS04056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:42 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:33 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 70..1242 | 8..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:09 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 94..1252 | 24..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:16 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 83..1241 | 24..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:50 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 94..1252 | 24..1182 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:50 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15749259..15749303 | 24..68 | 100 | -> | Plus |
X | 15749365..15749435 | 69..139 | 100 | -> | Plus |
X | 15749832..15749949 | 140..257 | 100 | -> | Plus |
X | 15750010..15750934 | 258..1182 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:09 Download gff for
BS04056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15643865..15643982 | 140..257 | 100 | -> | Plus |
arm_X | 15643292..15643336 | 24..68 | 100 | -> | Plus |
arm_X | 15643398..15643468 | 69..139 | 100 | -> | Plus |
arm_X | 15644043..15644967 | 258..1182 | 100 | | Plus |
BS04056.pep Sequence
Translation from 16 to 1182
> BS04056.pep
MFSVTCVAPVNIALIKYWGKRHEELILPVNDSISMTLSTDELCAKTTVTA
SESFETNRMWLNGEEVPFEESSRLQRCLNEVHRLAVASGSQKVPPTWKLH
IASVNNFPTAAGLASSAAGYACLVYSLSRLYDIPLNEELTTVARQGSGSA
CRSLYGGFVQWHRGALDDGSDSVARQIAPSDHWPNMHVLILVVNDARKKT
ASTRGMQQAVKTSQLIKHRVDQVVPDRIIRLREAIASHDFQAFAEITMKD
SNQFHAIALDTYPPCVYMNDVSHSIVSFVHDYNERMGSYHAAYTFDAGPN
ACLYVLAEHVPHLLSAIQKVFPNDLADGGTYLRGLPIPKVQDAESSKLDS
LDVHAKNAFRYIIHTKVGEGPKELSADNSLLINGLPLK*
BS04056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PB | 388 | CG8239-PB | 1..388 | 1..388 | 2021 | 100 | Plus |
CG8239-PA | 388 | CG8239-PA | 1..388 | 1..388 | 2021 | 100 | Plus |