Clone BS04056 Report

Search the DGRC for BS04056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG8239-RA
Protein status:BS04056.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04056.3prime Sequence

851 bp (817 high quality bases) assembled on 2005-12-01

> BS04056.3prime
ATGGTCTAGAAAGCTTTCACTTCAGCGGAAGTCCATTTATCAATAAACTA
TTATCAGCGCTTAATTCTTTTGGTCCTTCACCGACTTTCGTGTGGATTAT
ATATCTGAAAGCATTTTTAGCATGAACATCTAGTGAATCCAACTTGCTGC
TCTCAGCATCTTGCACTTTTGGAATGGGAAGGCCTCGCAAGTAGGTGCCA
CCATCCGCTAAATCATTGGGGAACACCTTTTGGATAGCGCTCAAGAGATG
CGGAACGTGCTCCGCCAGGACATAGAGGCATGCATTTGGACCAGCATCGA
AGGTGTACGCGGCATGATAGCTACCCATTCGTTCGTTATAATCGTGAACG
AAGGACACGATACTGTGCGACACATCGTTCATGTAGACACACGGCGGATA
GGTGTCCAGGGCGATGGCATGGAACTGATTCGAGTCCTTCATCGTTATCT
CGGCGAATGCCTGAAAGTCATGGCTTGCGATGGCCTCCCTCAATCGGATA
ATCCGGTCGGGAACCACTTGATCCACGCGATGTTTGATCAACTGAGACGT
CTTCACCGCCTGTTGCATGCCCCTTGTCGAGGCAGTCTTCTTGCGTGCAT
CGTTAACGACCAGGATGAGCACATGCATGTTGGGCCAGTGGTCGGATGGA
GCTATTTGCCTCGCCACCGAATCGCTGCCATCATCCAGAGCTCCGCGATG
CCACTGCACAAAACCGCCATACAGACTGCGACATGCCGATCCACTTCCTT
GCCGCGCCACCGTCGTCAGCTCCTCATTCAGCGGTATATCGTAGAGTCGG
GACAGGGAGTACACCAGGCAAGCGTAGCCAGCTGCACTGGATGCCAGTCC
G

BS04056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PA 1167 CG8239-RA 333..1167 851..17 4150 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 419..1253 851..17 4160 99.9 Minus
CG8239-RA 1538 CG8239-RA 419..1253 851..17 4160 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750101..15750935 851..17 4160 99.9 Minus
Blast to na_te.dros performed on 2015-02-03 13:33:24 has no hits.

BS04056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:05 Download gff for BS04056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 333..1167 17..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:41 Download gff for BS04056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 333..1167 17..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:36 Download gff for BS04056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 419..1253 17..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:29 Download gff for BS04056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 419..1253 17..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:29 Download gff for BS04056.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15750101..15750935 17..851 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:36 Download gff for BS04056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15644134..15644968 17..851 99   Minus

BS04056.5prime Sequence

782 bp (740 high quality bases) assembled on 2005-12-01

> BS04056.5prime
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTTCCATG

BS04056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PA 1167 CG8239-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 85..852 15..782 3840 100 Plus
CG8239-RA 1538 CG8239-RA 85..852 15..782 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750008..15750534 256..782 2635 100 Plus
X 23542271 X 15749830..15749949 138..257 600 100 Plus
X 23542271 X 15749365..15749435 69..139 355 100 Plus
X 23542271 X 15749250..15749304 15..69 275 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:45:08 has no hits.

BS04056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:06 Download gff for BS04056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:43 Download gff for BS04056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:28 Download gff for BS04056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 81..852 8..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:33 Download gff for BS04056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 81..852 8..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:33 Download gff for BS04056.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15749246..15749303 8..68 93 -> Plus
X 15749365..15749435 69..139 100 -> Plus
X 15749832..15749949 140..257 100 -> Plus
X 15750010..15750534 258..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:28 Download gff for BS04056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15643279..15643336 8..68 93 -> Plus
arm_X 15643398..15643468 69..139 100 -> Plus
arm_X 15643865..15643982 140..257 100 -> Plus
arm_X 15644043..15644567 258..782 100   Plus

BS04056.complete Sequence

1199 bp assembled on 2007-10-17

GenBank Submission: FJ634848

> BS04056.complete
GAAGTTATCAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACA
TAGCGCTCATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCC
GTCAATGATTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAA
GACAACAGTGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGA
ATGGGGAGGAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTG
AATGAAGTTCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCC
AACCTGGAAGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCG
GACTGGCATCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCC
CGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCA
AGGAAGTGGATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGC
ATCGCGGAGCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCT
CCATCCGACCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGA
TGCACGCAAGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGA
CGTCTCAGTTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATT
ATCCGATTGAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGA
GATAACGATGAAGGACTCGAATCAGTTCCATGCCATCGCCCTGGACACCT
ATCCGCCGTGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTC
GTTCACGATTATAACGAACGAATGGGTAGCTATCATGCCGCGTACACCTT
CGATGCTGGTCCAAATGCATGCCTCTATGTCCTGGCGGAGCACGTTCCGC
ATCTCTTGAGCGCTATCCAAAAGGTGTTCCCCAATGATTTAGCGGATGGT
GGCACCTACTTGCGAGGCCTTCCCATTCCAAAAGTGCAAGATGCTGAGAG
CAGCAAGTTGGATTCACTAGATGTTCATGCTAAAAATGCTTTCAGATATA
TAATCCACACGAAAGTCGGTGAAGGACCAAAAGAATTAAGCGCTGATAAT
AGTTTATTGATAAATGGACTTCCGCTGAAGTGAAAGCTTTCTAGACCAT

BS04056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 1167 CG8239-PB 1..1167 17..1183 5835 100 Plus
CG8239-RA 1167 CG8239-PA 1..1167 17..1183 5835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 85..1253 15..1183 5845 100 Plus
CG8239-RA 1538 CG8239-RA 85..1253 15..1183 5845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750008..15750935 256..1183 4640 100 Plus
X 23542271 X 15749830..15749949 138..257 600 100 Plus
X 23542271 X 15749365..15749435 69..139 355 100 Plus
X 23542271 X 15749250..15749304 15..69 275 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:11:26 has no hits.

BS04056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:42 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 17..1183 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:33 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 70..1242 8..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:09 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 94..1252 24..1182 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:16 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 83..1241 24..1182 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:50 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 94..1252 24..1182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:50 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
X 15749259..15749303 24..68 100 -> Plus
X 15749365..15749435 69..139 100 -> Plus
X 15749832..15749949 140..257 100 -> Plus
X 15750010..15750934 258..1182 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:09 Download gff for BS04056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15643865..15643982 140..257 100 -> Plus
arm_X 15643292..15643336 24..68 100 -> Plus
arm_X 15643398..15643468 69..139 100 -> Plus
arm_X 15644043..15644967 258..1182 100   Plus

BS04056.pep Sequence

Translation from 16 to 1182

> BS04056.pep
MFSVTCVAPVNIALIKYWGKRHEELILPVNDSISMTLSTDELCAKTTVTA
SESFETNRMWLNGEEVPFEESSRLQRCLNEVHRLAVASGSQKVPPTWKLH
IASVNNFPTAAGLASSAAGYACLVYSLSRLYDIPLNEELTTVARQGSGSA
CRSLYGGFVQWHRGALDDGSDSVARQIAPSDHWPNMHVLILVVNDARKKT
ASTRGMQQAVKTSQLIKHRVDQVVPDRIIRLREAIASHDFQAFAEITMKD
SNQFHAIALDTYPPCVYMNDVSHSIVSFVHDYNERMGSYHAAYTFDAGPN
ACLYVLAEHVPHLLSAIQKVFPNDLADGGTYLRGLPIPKVQDAESSKLDS
LDVHAKNAFRYIIHTKVGEGPKELSADNSLLINGLPLK*

BS04056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PB 388 CG8239-PB 1..388 1..388 2021 100 Plus
CG8239-PA 388 CG8239-PA 1..388 1..388 2021 100 Plus