Clone BS04057 Report

Search the DGRC for BS04057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG11652-RA
Protein status:BS04057.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04057.3prime Sequence

951 bp (746 high quality bases) assembled on 2005-12-01

> BS04057.3prime
ATGGTCTAGAAAGCTTTTATCCCTTCTTAAAGTCGAGAAGATCGTCCAGA
GCCGCTGCCTTGCCGGAATCGTCCTTCTCCAATTCCGCTCGCGTGCATCT
TCCACAACAGTCAGCCGAGGGCTTGTTCTCGCACTCTCCTATCGCTGGTG
GCTTGAAGTTGGGAGTCCAGGGTCCCAGGCTGCCGCTAGCGTAGAAGTCC
ATGGGATAGGCGTTGTTGCGCGGCGACGAGTTGTGCGGCGTCCACTCGAC
ATCGCCCAAAACCACGGACAGCTCGTAAGGATTCAGCAACGGTTGGCTAA
ATGCGGATCCCCAGTCGATTGAAAGTCGCGGACAAGCAATCTGCACAAAG
GCGTCGATGTCGGCGAAAAGAGCCAATTTCTGTGGGAAGATCTCCGACAG
CAATAATGTGGTAGTTTCAATACCCTTGGCATGAAGTCGCTTCTCCAAAA
ACCGATGCACTCTTGAACTGCCTTGTCTTCCGAGTGTTCCAAGTATGATG
CCAATGCGGCGCGCCTTCTTAGCCCGCTGAACAGCGTCCAGGCGCAGATT
CTGCATCGCCGAGTGATCGTACTGCTCTGTGGTGAACTTCTTTTCATAGG
GATCGTACTTGTAAGCCTTTAGCAACGGGTTTGCTATCATTGCGGATTCT
AGATGAAAACGCCCGTCACCCAAATATATTATCATCTTCGTTGTCTCTGG
CAGCTGAGGCGAAGTGCACCCAAGAATCTCTCCAGGACTAAGTGGCTTGG
CCTGTGGTACTATCACATCATAGCCGGCTGCCTTTAGCTCAGTAGATGCA
GCTTGCAGCGTTGTCACGAACTGTATTGTGCTTACTAAAGCTATTTGGCC
CCCTTCCGGGCGGGAAGTCAGCTTTACAGAGTCCAGGGAAGTGCAGCGGA
TCGATTTTGATGTCTACAAAAATGTACAGCACCTTGATGCCCCACGTCTG
A

BS04057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PA 1365 CG11652-RA 519..1365 863..17 4210 99.8 Minus
CG11652-PB 1365 CG11652-RB 519..1365 863..17 4210 99.8 Minus
CG11652-PA 1365 CG11652-RA 432..496 951..887 300 98.4 Minus
CG11652-PB 1365 CG11652-RB 432..496 951..887 300 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1720 CG11652-RC 520..1453 951..17 4575 99.5 Minus
CG11652-RB 1784 CG11652-RB 584..1517 951..17 4575 99.5 Minus
CG11652-RA 1725 CG11652-RA 525..1458 951..17 4575 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11694146..11694747 17..618 3010 100 Plus
3L 28110227 3L 11694809..11695143 616..951 1555 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 18:27:22 has no hits.

BS04057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:07 Download gff for BS04057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 433..1365 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:45 Download gff for BS04057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 433..1365 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:47:05 Download gff for BS04057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 526..1465 10..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:25 Download gff for BS04057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 526..1465 10..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:25 Download gff for BS04057.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11694139..11694745 10..616 99 <- Plus
3L 11694810..11695142 617..950 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:47:05 Download gff for BS04057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11687239..11687845 10..616 99 <- Plus
arm_3L 11687910..11688242 617..950 98   Plus

BS04057.5prime Sequence

843 bp (738 high quality bases) assembled on 2005-11-29

> BS04057.5prime
GAAGTTATCAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCC
CGACCAGCGAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAG
GTGTTCAAGCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGA
TGATCCACTGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACT
TCGAGATGCACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGT
GTGGCCCTGCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAG
CGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATG
TGACTTACGGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGA
GCTGATCTGCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCA
GACGTGTGGCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATC
CGCTGCACTTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGC
CAAATAGCTTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGC
ATCTACTGAGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCA
AGCCACTTAGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCA
GAGACAACGAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGA
ATCCGCAATGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCT
ATGAAAAGAAGTTCACCACAGAGCAGTACGATCACTCGGCGAT

BS04057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PA 1365 CG11652-RA 1..827 17..843 4135 100 Plus
CG11652-PB 1365 CG11652-RB 1..827 17..843 4135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1720 CG11652-RC 88..915 16..843 4140 100 Plus
CG11652-RB 1784 CG11652-RB 152..979 16..843 4140 100 Plus
CG11652-RA 1725 CG11652-RA 93..920 16..843 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11694809..11695575 782..16 3835 100 Minus
3L 28110227 3L 11694684..11694747 843..780 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:59:07 has no hits.

BS04057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:09 Download gff for BS04057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:46 Download gff for BS04057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-PB 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:12 Download gff for BS04057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 89..920 12..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:47 Download gff for BS04057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 89..920 12..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:47 Download gff for BS04057.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11694810..11695584 5..781 99   Minus
3L 11694684..11694745 782..843 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:12 Download gff for BS04057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11687784..11687845 782..843 100 <- Minus
arm_3L 11687910..11688684 5..781 99   Minus

BS04057.complete Sequence

1397 bp (1397 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634849

> BS04057.complete
GAAGTTATCAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCC
CGACCAGCGAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAG
GTGTTCAAGCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGA
TGATCCACTGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACT
TCGAGATGCACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGT
GTGGCCCTGCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAG
CGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATG
TGACTTACGGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGA
GCTGATCTGCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCA
GACGTGTGGCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATC
CGCTGCACTTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGC
CAAATAGCTTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGC
ATCTACTGAGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCA
AGCCACTTAGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCA
GAGACAACGAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGA
ATCCGCAATGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCT
ATGAAAAGAAGTTCACCACAGAGCAGTACGATCACTCGGCGATGCAGAAT
CTGCGCCTGGACGCTGTTCAGCGGGCTAAGAAGGCGCGCCGCATTGGCAT
CATACTTGGAACACTCGGAAGACAAGGCAGTTCAAGAGTGCATCGGTTTT
TGGAGAAGCGACTTCATGCCAAGGGTATTGAAACTACCACATTATTGCTG
TCGGAGATCTTCCCACAGAAATTGGCTCTTTTCGCCGACATCGACGCCTT
TGTGCAGATTGCTTGTCCGCGACTTTCAATCGACTGGGGATCCGCATTTA
GCCAACCGTTGCTGAATCCTTACGAGCTGTCCGTGGTTTTGGGCGATGTC
GAGTGGACGCCGCACAACTCGTCGCCGCGCAACAACGCCTATCCCATGGA
CTTCTACGCTAGCGGCAGCCTGGGACCCTGGACTCCCAACTTCAAGCCAC
CAGCGATAGGAGAGTGCGAGAACAAGCCCTCGGCTGACTGTTGTGGAAGA
TGCACGCGAGCGGAATTGGAGAAGGACGATTCCGGCAAGGCAGCGGCTCT
GGACGATCTTCTCGACTTTAAGAAGGGATAAAAGCTTTCTAGACCAT

BS04057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1365 CG11652-PC 1..1365 17..1381 6825 100 Plus
CG11652-RB 1365 CG11652-PB 1..1365 17..1381 6825 100 Plus
CG11652-RA 1365 CG11652-PA 1..1365 17..1381 6825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RC 1720 CG11652-RC 88..1453 16..1381 6830 100 Plus
CG11652-RB 1784 CG11652-RB 152..1517 16..1381 6830 100 Plus
CG11652-RA 1725 CG11652-RA 93..1458 16..1381 6830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11694809..11695575 782..16 3835 100 Minus
3L 28110227 3L 11694146..11694747 1381..780 3010 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:54:26 has no hits.

BS04057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:34 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 1..1365 17..1381 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:10 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 97..1469 16..1388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:59 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 99..1456 22..1379 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:35 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 97..1469 16..1388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:15 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 99..1456 22..1379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:15 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11694148..11694745 782..1379 100 <- Minus
3L 11694810..11695569 22..781 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:59 Download gff for BS04057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11687910..11688669 22..781 100   Minus
arm_3L 11687248..11687845 782..1379 100 <- Minus

BS04057.pep Sequence

Translation from 16 to 1380

> BS04057.pep
MLDVIQPSSNLPTSESTDIVVVRARPKKVFKPKARINRIPQELLDDPLLQ
QAIDRLPSNYNFEMHKTIWRIREMKAKRVALQLPEGLLMYAMVISDIVER
FTSADTVIMGDVTYGACCVDDYTAKALGADLLVHYGHSCLIPVDQTCGIK
VLYIFVDIKIDPLHFLDSVKLNFRPEVGQIALVSTIQFVTTLQAASTELK
AAGYDVIVPQAKPLSPGEILGCTSPQLPETTKMIIYLGDGRFHLESAMIA
NPLLKAYKYDPYEKKFTTEQYDHSAMQNLRLDAVQRAKKARRIGIILGTL
GRQGSSRVHRFLEKRLHAKGIETTTLLLSEIFPQKLALFADIDAFVQIAC
PRLSIDWGSAFSQPLLNPYELSVVLGDVEWTPHNSSPRNNAYPMDFYASG
SLGPWTPNFKPPAIGECENKPSADCCGRCTRAELEKDDSGKAAALDDLLD
FKKG*

BS04057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PC 454 CG11652-PC 1..454 1..454 2363 100 Plus
CG11652-PB 454 CG11652-PB 1..454 1..454 2363 100 Plus
CG11652-PA 454 CG11652-PA 1..454 1..454 2363 100 Plus
CG7265-PA 469 CG7265-PA 36..369 59..396 254 25.1 Plus