Clone BS04060 Report

Search the DGRC for BS04060

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptMapmodulin-RA
Protein status:BS04060.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04060.3prime Sequence

816 bp (815 high quality bases) assembled on 2005-12-01

> BS04060.3prime
ATGGTCTAGAAAGCTTTTAACCATCATGCTTTCTCTTCTTGCCTCTGACT
TGCGACTCGTCTGCTTCCTTTTCGCCATCCTTGTCCTTGGCATTCACTGA
TGCAGCCGATTCGTTTGCATCACCATCGGCATCATCAATATCGGAATCCT
CTTCCTCGTCCTCCTCGCCAGCCTCGTCTTCGCCTTCCCAATCAGAGTTA
TCCTCTTCCAAATCGTCATTGTACACCTCCGACAGGGACACTTCACCATT
CGCCTCTTCGTCGCTATCATCGCTGTCGTCATCTTCGTCGGAAACTCCCA
CTTCGTCGGAATCGTTGCCGTTGACCTCATCATCATCATCGCCATCAGAT
TGCACCTCCTCGTCGTTGCAATCAAATCCATCTAGGAAATTTAACGATGG
CAACATCTTGAAGATCTTCTCGCGGTAATTATCCACTTGAGTAGCGTCGT
TATTAAACAAATCCAGAACAACCAGATTTTTAAACTCCTCCAGGGGCTTC
AGGGTTTCCAGATCCTTTATCTTGTTGCCAGACAAGTTGAGATATTGCAG
TTTGGGGCTAGTGGTCAGATAGTTGAGGCCACTCGAAATCCGATTGTCGG
ACAGTTCGAGCTTCTTTAAATTGGGCAGCTTGGGGAAACCTTTCAGTGTG
GTGAGACCCACGTTGATCAAGCTAAGCGATTCCAAGGCTGTGTATTCATC
TGTAAGGCCAACGATGCTTGTACTACGGCAGTTGTCCAGATTCAGCTCTG
TGATCTGATTTACTTTGCGTGCGCGTCTTTCCAGTTCTATTCTCTTCTCC
ATGTCGACTGATAACT

BS04060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5784-PB 786 Mapmodulin-RB 1..786 802..17 3930 100 Minus
CG5784-PA 786 Mapmodulin-RA 1..786 802..17 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2073 CG5784-RA 397..1184 802..15 3940 100 Minus
Mapmodulin-RB 2145 CG5784-RB 328..1115 802..15 3940 100 Minus
Mapmodulin-RD 2379 CG5784-RD 397..904 802..295 2540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 378..756 1895 100 Plus
2R 25286936 2R 17867326..17867561 61..296 1180 100 Plus
2R 25286936 2R 17868287..17868370 295..378 420 100 Plus
2R 25286936 2R 17867208..17867256 15..63 245 100 Plus
2R 25286936 2R 17871329..17871376 755..802 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:40:08 has no hits.

BS04060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:11 Download gff for BS04060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PB 1..786 17..802 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:47 Download gff for BS04060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PA 1..786 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:04 Download gff for BS04060.3prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1115 15..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:45 Download gff for BS04060.3prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1115 15..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:45 Download gff for BS04060.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17867208..17867253 15..60 100 <- Plus
2R 17867326..17867559 61..294 100 <- Plus
2R 17868287..17868369 295..377 100 <- Plus
2R 17868432..17868808 378..754 100 <- Plus
2R 17871329..17871376 755..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:04 Download gff for BS04060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13754713..13754758 15..60 100 <- Plus
arm_2R 13754831..13755064 61..294 100 <- Plus
arm_2R 13755792..13755874 295..377 100 <- Plus
arm_2R 13755937..13756313 378..754 100 <- Plus
arm_2R 13758834..13758881 755..802 100   Plus

BS04060.5prime Sequence

780 bp (745 high quality bases) assembled on 2005-11-29

> BS04060.5prime
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAANA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAA

BS04060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5784-PB 786 Mapmodulin-RB 1..764 17..780 3801 99.8 Plus
CG5784-PA 786 Mapmodulin-RA 1..764 17..780 3801 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2073 CG5784-RA 397..1160 17..780 3809 99.9 Plus
Mapmodulin-RB 2145 CG5784-RB 328..1091 17..780 3809 99.9 Plus
Mapmodulin-RD 2379 CG5784-RD 397..904 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 441..63 1895 100 Minus
2R 25286936 2R 17867326..17867561 758..523 1169 99.6 Minus
2R 25286936 2R 17868287..17868370 524..441 420 100 Minus
2R 25286936 2R 17871329..17871376 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:47:48 has no hits.

BS04060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:12 Download gff for BS04060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PB 1..762 17..778 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:49 Download gff for BS04060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5784-PA 1..762 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:15 Download gff for BS04060.5prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1089 17..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:00 Download gff for BS04060.5prime
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1089 17..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:00 Download gff for BS04060.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17867234..17867253 759..778 100 <- Minus
2R 17867326..17867559 525..758 99 <- Minus
2R 17868287..17868369 442..524 100 <- Minus
2R 17868432..17868808 65..441 100 <- Minus
2R 17871329..17871376 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:15 Download gff for BS04060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13754739..13754758 759..778 100 <- Minus
arm_2R 13754831..13755064 525..758 99 <- Minus
arm_2R 13755792..13755874 442..524 100 <- Minus
arm_2R 13755937..13756313 65..441 100 <- Minus
arm_2R 13758834..13758881 17..64 100   Minus

BS04060.complete Sequence

818 bp (818 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638774

> BS04060.complete
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAAAA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTT
AAAAGCTTTCTAGACCAT

BS04060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 786 CG5784-PA 1..786 17..802 3930 100 Plus
Mapmodulin-RB 786 CG5784-PB 1..786 17..802 3930 100 Plus
Mapmodulin-RD 1092 CG5784-PD 1..508 17..524 2540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-RA 2073 CG5784-RA 397..1184 17..804 3940 100 Plus
Mapmodulin-RB 2145 CG5784-RB 328..1115 17..804 3940 100 Plus
Mapmodulin-RD 2379 CG5784-RD 397..904 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 441..63 1895 100 Minus
2R 25286936 2R 17867326..17867561 758..523 1180 100 Minus
2R 25286936 2R 17868287..17868370 524..441 420 100 Minus
2R 25286936 2R 17867208..17867256 804..756 245 100 Minus
2R 25286936 2R 17871329..17871376 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:50 has no hits.

BS04060.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:36 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:11 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 392..1179 17..804 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:08 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1111 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:36 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RA 392..1179 17..804 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:26 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RB 328..1111 17..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:26 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17868432..17868808 65..441 100 <- Minus
2R 17871329..17871376 17..64 100   Minus
2R 17867212..17867253 759..800 100 <- Minus
2R 17867326..17867559 525..758 100 <- Minus
2R 17868287..17868369 442..524 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:08 Download gff for BS04060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13754717..13754758 759..800 100 <- Minus
arm_2R 13754831..13755064 525..758 100 <- Minus
arm_2R 13755792..13755874 442..524 100 <- Minus
arm_2R 13755937..13756313 65..441 100 <- Minus
arm_2R 13758834..13758881 17..64 100   Minus

BS04060.pep Sequence

Translation from 16 to 801

> BS04060.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGVSDEDDDSDDSDEEANGEVSLSEVYNDDLEE
DNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEADES
QVRGKKRKHDG*

BS04060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-PA 261 CG5784-PA 1..261 1..261 1342 100 Plus
Mapmodulin-PB 261 CG5784-PB 1..261 1..261 1342 100 Plus
Mapmodulin-PD 363 CG5784-PD 1..363 1..261 888 57.3 Plus
Mapmodulin-PC 363 CG5784-PC 1..363 1..261 888 57.3 Plus
l(2)01289-PG 1191 CG9432-PG 852..968 146..260 192 34.2 Plus