Clone Sequence Records
BS04060.3prime Sequence
816 bp (815 high quality bases) assembled on 2005-12-01
> BS04060.3prime
ATGGTCTAGAAAGCTTTTAACCATCATGCTTTCTCTTCTTGCCTCTGACT
TGCGACTCGTCTGCTTCCTTTTCGCCATCCTTGTCCTTGGCATTCACTGA
TGCAGCCGATTCGTTTGCATCACCATCGGCATCATCAATATCGGAATCCT
CTTCCTCGTCCTCCTCGCCAGCCTCGTCTTCGCCTTCCCAATCAGAGTTA
TCCTCTTCCAAATCGTCATTGTACACCTCCGACAGGGACACTTCACCATT
CGCCTCTTCGTCGCTATCATCGCTGTCGTCATCTTCGTCGGAAACTCCCA
CTTCGTCGGAATCGTTGCCGTTGACCTCATCATCATCATCGCCATCAGAT
TGCACCTCCTCGTCGTTGCAATCAAATCCATCTAGGAAATTTAACGATGG
CAACATCTTGAAGATCTTCTCGCGGTAATTATCCACTTGAGTAGCGTCGT
TATTAAACAAATCCAGAACAACCAGATTTTTAAACTCCTCCAGGGGCTTC
AGGGTTTCCAGATCCTTTATCTTGTTGCCAGACAAGTTGAGATATTGCAG
TTTGGGGCTAGTGGTCAGATAGTTGAGGCCACTCGAAATCCGATTGTCGG
ACAGTTCGAGCTTCTTTAAATTGGGCAGCTTGGGGAAACCTTTCAGTGTG
GTGAGACCCACGTTGATCAAGCTAAGCGATTCCAAGGCTGTGTATTCATC
TGTAAGGCCAACGATGCTTGTACTACGGCAGTTGTCCAGATTCAGCTCTG
TGATCTGATTTACTTTGCGTGCGCGTCTTTCCAGTTCTATTCTCTTCTCC
ATGTCGACTGATAACT
BS04060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5784-PB | 786 | Mapmodulin-RB | 1..786 | 802..17 | 3930 | 100 | Minus |
CG5784-PA | 786 | Mapmodulin-RA | 1..786 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 2073 | CG5784-RA | 397..1184 | 802..15 | 3940 | 100 | Minus |
Mapmodulin-RB | 2145 | CG5784-RB | 328..1115 | 802..15 | 3940 | 100 | Minus |
Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 802..295 | 2540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17868432..17868810 | 378..756 | 1895 | 100 | Plus |
2R | 25286936 | 2R | 17867326..17867561 | 61..296 | 1180 | 100 | Plus |
2R | 25286936 | 2R | 17868287..17868370 | 295..378 | 420 | 100 | Plus |
2R | 25286936 | 2R | 17867208..17867256 | 15..63 | 245 | 100 | Plus |
2R | 25286936 | 2R | 17871329..17871376 | 755..802 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:40:08 has no hits.
BS04060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:11 Download gff for
BS04060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PB | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:47 Download gff for
BS04060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:04 Download gff for
BS04060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1115 | 15..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:45 Download gff for
BS04060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1115 | 15..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:45 Download gff for
BS04060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17867208..17867253 | 15..60 | 100 | <- | Plus |
2R | 17867326..17867559 | 61..294 | 100 | <- | Plus |
2R | 17868287..17868369 | 295..377 | 100 | <- | Plus |
2R | 17868432..17868808 | 378..754 | 100 | <- | Plus |
2R | 17871329..17871376 | 755..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:04 Download gff for
BS04060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13754713..13754758 | 15..60 | 100 | <- | Plus |
arm_2R | 13754831..13755064 | 61..294 | 100 | <- | Plus |
arm_2R | 13755792..13755874 | 295..377 | 100 | <- | Plus |
arm_2R | 13755937..13756313 | 378..754 | 100 | <- | Plus |
arm_2R | 13758834..13758881 | 755..802 | 100 | | Plus |
BS04060.5prime Sequence
780 bp (745 high quality bases) assembled on 2005-11-29
> BS04060.5prime
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAANA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAA
BS04060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5784-PB | 786 | Mapmodulin-RB | 1..764 | 17..780 | 3801 | 99.8 | Plus |
CG5784-PA | 786 | Mapmodulin-RA | 1..764 | 17..780 | 3801 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 2073 | CG5784-RA | 397..1160 | 17..780 | 3809 | 99.9 | Plus |
Mapmodulin-RB | 2145 | CG5784-RB | 328..1091 | 17..780 | 3809 | 99.9 | Plus |
Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17868432..17868810 | 441..63 | 1895 | 100 | Minus |
2R | 25286936 | 2R | 17867326..17867561 | 758..523 | 1169 | 99.6 | Minus |
2R | 25286936 | 2R | 17868287..17868370 | 524..441 | 420 | 100 | Minus |
2R | 25286936 | 2R | 17871329..17871376 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:47:48 has no hits.
BS04060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:12 Download gff for
BS04060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PB | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:49 Download gff for
BS04060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5784-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:15 Download gff for
BS04060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1089 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:00 Download gff for
BS04060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1089 | 17..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:00 Download gff for
BS04060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17867234..17867253 | 759..778 | 100 | <- | Minus |
2R | 17867326..17867559 | 525..758 | 99 | <- | Minus |
2R | 17868287..17868369 | 442..524 | 100 | <- | Minus |
2R | 17868432..17868808 | 65..441 | 100 | <- | Minus |
2R | 17871329..17871376 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:15 Download gff for
BS04060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13754739..13754758 | 759..778 | 100 | <- | Minus |
arm_2R | 13754831..13755064 | 525..758 | 99 | <- | Minus |
arm_2R | 13755792..13755874 | 442..524 | 100 | <- | Minus |
arm_2R | 13755937..13756313 | 65..441 | 100 | <- | Minus |
arm_2R | 13758834..13758881 | 17..64 | 100 | | Minus |
BS04060.complete Sequence
818 bp (818 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638774
> BS04060.complete
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGAT
GATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAA
TGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTG
GCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGAT
GCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAAAA
GGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTT
AAAAGCTTTCTAGACCAT
BS04060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 786 | CG5784-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Mapmodulin-RB | 786 | CG5784-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
Mapmodulin-RD | 1092 | CG5784-PD | 1..508 | 17..524 | 2540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-RA | 2073 | CG5784-RA | 397..1184 | 17..804 | 3940 | 100 | Plus |
Mapmodulin-RB | 2145 | CG5784-RB | 328..1115 | 17..804 | 3940 | 100 | Plus |
Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17868432..17868810 | 441..63 | 1895 | 100 | Minus |
2R | 25286936 | 2R | 17867326..17867561 | 758..523 | 1180 | 100 | Minus |
2R | 25286936 | 2R | 17868287..17868370 | 524..441 | 420 | 100 | Minus |
2R | 25286936 | 2R | 17867208..17867256 | 804..756 | 245 | 100 | Minus |
2R | 25286936 | 2R | 17871329..17871376 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:50 has no hits.
BS04060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:36 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:11 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RA | 392..1179 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:08 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1111 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:36 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RA | 392..1179 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:26 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mapmodulin-RB | 328..1111 | 17..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:26 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17868432..17868808 | 65..441 | 100 | <- | Minus |
2R | 17871329..17871376 | 17..64 | 100 | | Minus |
2R | 17867212..17867253 | 759..800 | 100 | <- | Minus |
2R | 17867326..17867559 | 525..758 | 100 | <- | Minus |
2R | 17868287..17868369 | 442..524 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:08 Download gff for
BS04060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13754717..13754758 | 759..800 | 100 | <- | Minus |
arm_2R | 13754831..13755064 | 525..758 | 100 | <- | Minus |
arm_2R | 13755792..13755874 | 442..524 | 100 | <- | Minus |
arm_2R | 13755937..13756313 | 65..441 | 100 | <- | Minus |
arm_2R | 13758834..13758881 | 17..64 | 100 | | Minus |
BS04060.pep Sequence
Translation from 16 to 801
> BS04060.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGVSDEDDDSDDSDEEANGEVSLSEVYNDDLEE
DNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEADES
QVRGKKRKHDG*
BS04060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mapmodulin-PA | 261 | CG5784-PA | 1..261 | 1..261 | 1342 | 100 | Plus |
Mapmodulin-PB | 261 | CG5784-PB | 1..261 | 1..261 | 1342 | 100 | Plus |
Mapmodulin-PD | 363 | CG5784-PD | 1..363 | 1..261 | 888 | 57.3 | Plus |
Mapmodulin-PC | 363 | CG5784-PC | 1..363 | 1..261 | 888 | 57.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 852..968 | 146..260 | 192 | 34.2 | Plus |