Clone BS04061 Report

Search the DGRC for BS04061

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG40160-RD
Protein status:BS04061.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04061.3prime Sequence

872 bp (789 high quality bases) assembled on 2005-12-01

> BS04061.3prime
ATGGTCTAGAAAGCTTTCATGCGGTGTACACAGCCGTTCCGAAGCCATTG
GTTAACATTTGCTGGTCAATCCAACCTCTGACCAAGGCTACGTTGGCATA
AGCTGCTGGAACTTCATCATTACATCCGATTCCCCAAGCAACTATACCAG
TCTGTTGATATCGGGATTCACGTGTACTTCCCCTAGGACAAGCTAGTGGA
GCCCCGCCATCCCCTTGACAGGTATCAATGCCACGCTGTCCACCCGCGCA
TATGAATGACCTATCCAATGCAAACTTTGGTCCAAGTCGAGTGCCTCTAA
GTCGTGTCTGACAACTGTTAAACTCAACAATGGGCAATGGAACACGTTTC
ATTAAGGAGCTATATTTGCCCAAAGAACCAAAAGCATCTTTTCCCCAGCC
GGTGGAAAAACATGTGTTACCGGGCTGCGGAATATCATCTTGTTGAGGTA
AACATATAACATTAATGTGATCATCCAAAGTAACCGGCTGACTTAGAATT
ACAAGTGCGAAATCATAAGCTATGCTTCTTCTGTTATAATCTGGGTGCAA
TATAACAGTTTGAACCGATCTTTCTTGATAGGGTAGACGCTCTTTCATTG
TTTGTGTATCCCACTCTCCAGCTCGGACAGTAAACGATCCTGTTCTAAGC
GACTCAACACAGTGCGCAGCGGTCAAAACCACCTGTTTATGTATAAGAGA
TCCAGCACAGAAATAGCTTAAATTTCCAGAATGCAATAATGCTACCGTCC
ATGGAAACTCGCCAAAACCCGCTTCATTTTGCGATACTCCGGAAAGAGTA
AAATCCAATCCACCTGTATTGCGAACACCACAGCCTCTTGGCTGGTTTGG
CCTTTGATCCAAGGGTGTCGGA

BS04061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:41:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 4869 CG40160-RH 495..1350 872..17 4280 100 Minus
CG40160-RG 1478 CG40160-RG 531..1386 872..17 4280 100 Minus
CG40160-RF 1422 CG40160-RF 475..1330 872..17 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 26225059..26225914 872..17 4280 100 Minus
2R 25286936 2R 3468952..3469792 17..872 3165 92.3 Plus
2R 25286936 2R 3335571..3336086 546..17 2010 92.8 Minus
2R 25286936 2R 3335269..3335566 872..578 1075 92.3 Minus
3L 28110227 3L 26223678..26223790 444..333 335 88.5 Minus
Blast to na_te.dros performed on 2015-02-10 22:53:00 has no hits.

BS04061.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:35:01 Download gff for BS04061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 476..1337 7..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:43 Download gff for BS04061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 476..1337 7..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:43 Download gff for BS04061.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 26225060..26225921 7..871 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:35:01 Download gff for BS04061.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 1571610..1572471 7..871 99   Minus

BS04061.5prime Sequence

924 bp (735 high quality bases) assembled on 2005-11-29

> BS04061.5prime
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCCGGTACTTTGGATGATCACATTAATGTTATATGTTTA
CCTCAACAAGATGATATTCCGCAGCCCCGGTACACATGTTTTTTCACCGG
CTGGGGAAAAGATGCTTTTGGTTC

BS04061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:41:18 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 4869 CG40160-RH 85..992 17..924 4450 99.4 Plus
CG40160-RG 1478 CG40160-RG 121..1028 17..924 4450 99.4 Plus
CG40160-RF 1422 CG40160-RF 65..972 17..924 4450 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 26224649..26225556 17..924 4450 99.3 Plus
2R 25286936 2R 3469293..3470199 924..20 3760 95 Minus
2R 25286936 2R 3334862..3335566 20..721 2945 95.2 Plus
2R 25286936 2R 3335571..3335742 753..924 725 94.8 Plus
3L 28110227 3L 26223678..26223748 855..924 185 87.3 Plus
Blast to na_te.dros performed on 2015-02-11 23:43:22 has no hits.

BS04061.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:09 Download gff for BS04061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 58..972 9..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for BS04061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 58..972 9..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for BS04061.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 26224649..26225556 17..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:09 Download gff for BS04061.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 1571199..1572106 17..924 99   Plus

BS04061.complete Sequence

1298 bp (1298 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634850

> BS04061.complete
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTTTA
CCTCAACAAGATGATATTCCGCAGCCCGGTAACACATGTTTTTCCACCGG
CTGGGGAAAAGATGCTTTTGGTTCTTTGGGCAAATATAGCTCCTTAATGA
AACGTGTTCCATTGCCCATTGTTGAGTTTAACAGTTGTCAGACACGACTT
AGAGGCACTCGACTTGGACCAAAGTTTGCATTGGATAGGTCATTCATATG
CGCGGGTGGACAGCGTGGCATTGATACCTGTCAAGGGGATGGCGGGGCTC
CACTAGCTTGTCCTAGGGGAAGTACACGTGAATCCCGATATCAACAGACT
GGTATAGTTGCTTGGGGAATCGGATGTAATGATGAAGTTCCAGCAGCTTA
TGCCAACGTAGCCTTGGTCAGAGGTTGGATTGACCAGCAAATGTTAACCA
ATGGCTTCGGAACGGCTGTGTACACCGCATGAAAGCTTTCTAGACCAT

BS04061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 1266 CG40160-PH 1..1266 17..1282 6330 100 Plus
CG40160-RG 1266 CG40160-PG 1..1266 17..1282 6330 100 Plus
CG40160-RF 1266 CG40160-PF 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-RH 4869 CG40160-RH 85..1350 17..1282 6330 100 Plus
CG40160-RG 1478 CG40160-RG 121..1386 17..1282 6330 100 Plus
CG40160-RF 1422 CG40160-RF 65..1330 17..1282 6330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 26224649..26225914 17..1282 6330 100 Plus
2R 25286936 2R 3468952..3470199 1282..20 5035 93.9 Minus
2R 25286936 2R 3334862..3335566 20..721 2945 95.2 Plus
2R 25286936 2R 3335571..3336086 753..1282 2010 92.8 Plus
3L 28110227 3L 26223678..26223790 855..966 335 88.5 Plus
Blast to na_te.dros performed on 2014-11-27 08:53:56 has no hits.

BS04061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:37 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RB 85..1350 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:13 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RB 86..1358 17..1292 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:49 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 65..1329 17..1281 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:37 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RB 86..1358 17..1292 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:17 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG40160-RF 65..1329 17..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:17 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
3L 26224649..26225913 17..1281 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:49 Download gff for BS04061.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 1571199..1572463 17..1281 100   Plus

BS04061.pep Sequence

Translation from 16 to 1281

> BS04061.pep
MNGYTNNCISICAILLIGVSSPAPQQNINAQKNIEEIFNTNSNLSAQKES
GIGLVITPDPMETISQQSNFTSTSGKTATCNCVPYYKCDPSTKSFTEDGS
FDGFGVIDIRFNDDDPICPASVDVCCDANRTLNKTLNPTPLDQRPNQPRG
CGVRNTGGLDFTLSGVSQNEAGFGEFPWTVALLHSGNLSYFCAGSLIHKQ
VVLTAAHCVESLRTGSFTVRAGEWDTQTMKERLPYQERSVQTVILHPDYN
RRSIAYDFALVILSQPVTLDDHINVICLPQQDDIPQPGNTCFSTGWGKDA
FGSLGKYSSLMKRVPLPIVEFNSCQTRLRGTRLGPKFALDRSFICAGGQR
GIDTCQGDGGAPLACPRGSTRESRYQQTGIVAWGIGCNDEVPAAYANVAL
VRGWIDQQMLTNGFGTAVYTA*

BS04061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG40160-PH 421 CG40160-PH 1..421 1..421 2262 100 Plus
CG40160-PG 421 CG40160-PG 1..421 1..421 2262 100 Plus
CG40160-PF 421 CG40160-PF 1..421 1..421 2262 100 Plus
CG40160-PE 421 CG40160-PE 1..421 1..421 2262 100 Plus
CG40160-PD 421 CG40160-PD 1..421 1..421 2262 100 Plus