Clone Sequence Records
BS04061.3prime Sequence
872 bp (789 high quality bases) assembled on 2005-12-01
> BS04061.3prime
ATGGTCTAGAAAGCTTTCATGCGGTGTACACAGCCGTTCCGAAGCCATTG
GTTAACATTTGCTGGTCAATCCAACCTCTGACCAAGGCTACGTTGGCATA
AGCTGCTGGAACTTCATCATTACATCCGATTCCCCAAGCAACTATACCAG
TCTGTTGATATCGGGATTCACGTGTACTTCCCCTAGGACAAGCTAGTGGA
GCCCCGCCATCCCCTTGACAGGTATCAATGCCACGCTGTCCACCCGCGCA
TATGAATGACCTATCCAATGCAAACTTTGGTCCAAGTCGAGTGCCTCTAA
GTCGTGTCTGACAACTGTTAAACTCAACAATGGGCAATGGAACACGTTTC
ATTAAGGAGCTATATTTGCCCAAAGAACCAAAAGCATCTTTTCCCCAGCC
GGTGGAAAAACATGTGTTACCGGGCTGCGGAATATCATCTTGTTGAGGTA
AACATATAACATTAATGTGATCATCCAAAGTAACCGGCTGACTTAGAATT
ACAAGTGCGAAATCATAAGCTATGCTTCTTCTGTTATAATCTGGGTGCAA
TATAACAGTTTGAACCGATCTTTCTTGATAGGGTAGACGCTCTTTCATTG
TTTGTGTATCCCACTCTCCAGCTCGGACAGTAAACGATCCTGTTCTAAGC
GACTCAACACAGTGCGCAGCGGTCAAAACCACCTGTTTATGTATAAGAGA
TCCAGCACAGAAATAGCTTAAATTTCCAGAATGCAATAATGCTACCGTCC
ATGGAAACTCGCCAAAACCCGCTTCATTTTGCGATACTCCGGAAAGAGTA
AAATCCAATCCACCTGTATTGCGAACACCACAGCCTCTTGGCTGGTTTGG
CCTTTGATCCAAGGGTGTCGGA
BS04061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:41:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 4869 | CG40160-RH | 495..1350 | 872..17 | 4280 | 100 | Minus |
CG40160-RG | 1478 | CG40160-RG | 531..1386 | 872..17 | 4280 | 100 | Minus |
CG40160-RF | 1422 | CG40160-RF | 475..1330 | 872..17 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 26225059..26225914 | 872..17 | 4280 | 100 | Minus |
2R | 25286936 | 2R | 3468952..3469792 | 17..872 | 3165 | 92.3 | Plus |
2R | 25286936 | 2R | 3335571..3336086 | 546..17 | 2010 | 92.8 | Minus |
2R | 25286936 | 2R | 3335269..3335566 | 872..578 | 1075 | 92.3 | Minus |
3L | 28110227 | 3L | 26223678..26223790 | 444..333 | 335 | 88.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:53:00 has no hits.
BS04061.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:35:01 Download gff for
BS04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 476..1337 | 7..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:43 Download gff for
BS04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 476..1337 | 7..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:43 Download gff for
BS04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 26225060..26225921 | 7..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:35:01 Download gff for
BS04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1571610..1572471 | 7..871 | 99 | | Minus |
BS04061.5prime Sequence
924 bp (735 high quality bases) assembled on 2005-11-29
> BS04061.5prime
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCCGGTACTTTGGATGATCACATTAATGTTATATGTTTA
CCTCAACAAGATGATATTCCGCAGCCCCGGTACACATGTTTTTTCACCGG
CTGGGGAAAAGATGCTTTTGGTTC
BS04061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:41:18 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 4869 | CG40160-RH | 85..992 | 17..924 | 4450 | 99.4 | Plus |
CG40160-RG | 1478 | CG40160-RG | 121..1028 | 17..924 | 4450 | 99.4 | Plus |
CG40160-RF | 1422 | CG40160-RF | 65..972 | 17..924 | 4450 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 26224649..26225556 | 17..924 | 4450 | 99.3 | Plus |
2R | 25286936 | 2R | 3469293..3470199 | 924..20 | 3760 | 95 | Minus |
2R | 25286936 | 2R | 3334862..3335566 | 20..721 | 2945 | 95.2 | Plus |
2R | 25286936 | 2R | 3335571..3335742 | 753..924 | 725 | 94.8 | Plus |
3L | 28110227 | 3L | 26223678..26223748 | 855..924 | 185 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:43:22 has no hits.
BS04061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:09 Download gff for
BS04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 58..972 | 9..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for
BS04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 58..972 | 9..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for
BS04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 26224649..26225556 | 17..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:09 Download gff for
BS04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1571199..1572106 | 17..924 | 99 | | Plus |
BS04061.complete Sequence
1298 bp (1298 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634850
> BS04061.complete
GAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATATCGATAT
GTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATT
AACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTC
AGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGG
AAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCA
ACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTT
CACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTA
ACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCT
AATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCC
AAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTA
CTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGG
ACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATC
TCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGC
TTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACA
ATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATT
GCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAA
TTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTTTA
CCTCAACAAGATGATATTCCGCAGCCCGGTAACACATGTTTTTCCACCGG
CTGGGGAAAAGATGCTTTTGGTTCTTTGGGCAAATATAGCTCCTTAATGA
AACGTGTTCCATTGCCCATTGTTGAGTTTAACAGTTGTCAGACACGACTT
AGAGGCACTCGACTTGGACCAAAGTTTGCATTGGATAGGTCATTCATATG
CGCGGGTGGACAGCGTGGCATTGATACCTGTCAAGGGGATGGCGGGGCTC
CACTAGCTTGTCCTAGGGGAAGTACACGTGAATCCCGATATCAACAGACT
GGTATAGTTGCTTGGGGAATCGGATGTAATGATGAAGTTCCAGCAGCTTA
TGCCAACGTAGCCTTGGTCAGAGGTTGGATTGACCAGCAAATGTTAACCA
ATGGCTTCGGAACGGCTGTGTACACCGCATGAAAGCTTTCTAGACCAT
BS04061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 1266 | CG40160-PH | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG40160-RG | 1266 | CG40160-PG | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG40160-RF | 1266 | CG40160-PF | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-RH | 4869 | CG40160-RH | 85..1350 | 17..1282 | 6330 | 100 | Plus |
CG40160-RG | 1478 | CG40160-RG | 121..1386 | 17..1282 | 6330 | 100 | Plus |
CG40160-RF | 1422 | CG40160-RF | 65..1330 | 17..1282 | 6330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 26224649..26225914 | 17..1282 | 6330 | 100 | Plus |
2R | 25286936 | 2R | 3468952..3470199 | 1282..20 | 5035 | 93.9 | Minus |
2R | 25286936 | 2R | 3334862..3335566 | 20..721 | 2945 | 95.2 | Plus |
2R | 25286936 | 2R | 3335571..3336086 | 753..1282 | 2010 | 92.8 | Plus |
3L | 28110227 | 3L | 26223678..26223790 | 855..966 | 335 | 88.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:53:56 has no hits.
BS04061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:37 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RB | 85..1350 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:13 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RB | 86..1358 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:49 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 65..1329 | 17..1281 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:37 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RB | 86..1358 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:17 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40160-RF | 65..1329 | 17..1281 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:17 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 26224649..26225913 | 17..1281 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:49 Download gff for
BS04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1571199..1572463 | 17..1281 | 100 | | Plus |
BS04061.pep Sequence
Translation from 16 to 1281
> BS04061.pep
MNGYTNNCISICAILLIGVSSPAPQQNINAQKNIEEIFNTNSNLSAQKES
GIGLVITPDPMETISQQSNFTSTSGKTATCNCVPYYKCDPSTKSFTEDGS
FDGFGVIDIRFNDDDPICPASVDVCCDANRTLNKTLNPTPLDQRPNQPRG
CGVRNTGGLDFTLSGVSQNEAGFGEFPWTVALLHSGNLSYFCAGSLIHKQ
VVLTAAHCVESLRTGSFTVRAGEWDTQTMKERLPYQERSVQTVILHPDYN
RRSIAYDFALVILSQPVTLDDHINVICLPQQDDIPQPGNTCFSTGWGKDA
FGSLGKYSSLMKRVPLPIVEFNSCQTRLRGTRLGPKFALDRSFICAGGQR
GIDTCQGDGGAPLACPRGSTRESRYQQTGIVAWGIGCNDEVPAAYANVAL
VRGWIDQQMLTNGFGTAVYTA*
BS04061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40160-PH | 421 | CG40160-PH | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PG | 421 | CG40160-PG | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PF | 421 | CG40160-PF | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PE | 421 | CG40160-PE | 1..421 | 1..421 | 2262 | 100 | Plus |
CG40160-PD | 421 | CG40160-PD | 1..421 | 1..421 | 2262 | 100 | Plus |