Clone Sequence Records
BS04062.3prime Sequence
886 bp (836 high quality bases) assembled on 2005-12-01
> BS04062.3prime
ATGGTCTAGAAAGCTTTTAGTTGGCTTTCTGCTCAGTTGCTCCCGCCGTG
ATAAACACCCTGGAGTGGAGCACATGGGTTGTGGGTTCCCTCTTCTCTTG
CGCATTGTTTACGGTGTTGACGTATGTGTACTGCATATAGAAGCCCAGAA
CGACGTCTGCTAATCCGGACAGCTCCTCTGCTGGGGTAAACTGTAGCCGC
AAAAGCACCTTGTTGCCCTTCCGCCAGACAATAAACTTGGGCTCCTCGGT
GGACAGTTGCACGTCCTCGTCGAACTCTTTCGAGTCATCGCGCTGGTTCA
GAACGAACTCGCTCTCCAACGGAACTATTTCGGCATTGGATATATCAATC
ACATCTCGTTTTACCTCCCGTGTTGAGTTTTGACGCGACAGTGTGATGCC
CACTGCTTTTAGAAGTGGGGACGAAGAAATGGGTTCCTCTTTCGCAACAC
GAGTGGCCTCTGTTGACAGCTGTGGATCCTCAGGAGGAGATGCAGTCAAC
AGTCGAATTGTCATATCGTATATAGTCGGATTCGTGAGCTTCAGCAAAAT
GGCGTTGCTTTTTCCTGCCACCAGTGGCTGCTCGCAGCGCACCATCACCA
CTTCAGGAACATGGTAGCTGGCGAAGTGCTGAATGCGGTACTTTATCGAT
GTGGGATGGTACTCCGGTTTGATTAGATTGTGCTCGCACTGGCGGCAACG
AAGCGACCGCTTAATCCACAGGGACCTGCGCTGAGGATAAAGACTCCCAA
CGGCCGTGGGCTGGTCCGCCGGCTGGCTATGTCGCTGGGTGATGGTTGTC
ACATTCCGCAAGTTCAAGGGTTCCGTGAAAATGTTCTCCGGCAGGCCCTC
CACCTCCGCCGTGGCCTCTGCCGGCGTTATCACGGC
BS04062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-PA | 1545 | CG12042-RA | 676..1545 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-RA | 1782 | CG12042-RA | 760..1630 | 886..16 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7667400..7668270 | 16..886 | 4355 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:05:18 has no hits.
BS04062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:15 Download gff for
BS04062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-PA | 676..1545 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:50 Download gff for
BS04062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-PA | 676..1545 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:20:50 Download gff for
BS04062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 760..1632 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:06 Download gff for
BS04062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 760..1632 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:48:06 Download gff for
BS04062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7667398..7668270 | 12..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:20:50 Download gff for
BS04062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3554903..3555775 | 12..886 | 99 | | Plus |
BS04062.5prime Sequence
842 bp (739 high quality bases) assembled on 2005-11-29
> BS04062.5prime
GAAGTTATCAGTCGACATGAGCTTCATGCAACCGAGTCCCGTTAAGTACG
CGTGCTCCTGCGGCATACTGAACCCGATCAACACGCTGTTCTTCTGCCGC
CACTGCCCCAAGCTGCGCTGTGGCTTCTGCGTGACGCATGAGATCGAGTC
GCACTTCTGCTCCAACTGCCTGGAAAACATTCCCTCCACAGAGGCGCGCC
ACAAGAAGAACTGTTGTGCGAACTGCTTCGACTGTCCTTGCTGCCAGCAC
ACCCTTTCCGCCAGAGCATCTACCGTTCCGGTGGTGCGCAAGTCGGAGGA
GGCGAAGGAACCAAAGGATGGCGACTCCAAGGGCGAAGCCACGCCCCCAG
TCCCGGCGAGCAGCAAGCCCTCTGCGGTGCCCACCACAAAAAAGATGTAC
TATTTGTCGTGCTTGTCCTGCCGATGGACCACGCGAGATGTGGGCATTCC
CGACCAAGGCGTGGCCACGGGCACCTGGCCGGATAACGAGTGCTTGTACC
AGGCGCGATTTAATGCTCTGGTCGAGTACTTCCAGGCGGTGGTGCTGCAG
GAGAAGCAGGAGAAACTGGAGTTCATGCGGCGCAAGGCACCCAAGCAGCA
CAAGTTTCCCAGTCTGACGGATCGCACTGGACTAACCGTCTCACTTATTC
GCCGCCAAATCGGCTGGAACGACAAGGCTCCCAAGGCTAAAGCCGTGATA
ACGCCGGCAGAGGCCACGGCGGAGGTGGAGGGCCTGCCGGAGAACATTTT
CACGGAACCCTTGAACTTGCGGAATGTGACAACCATCACCCAGCGACATA
GCCAGCCGGCGGACCAGCCCACGGCCGTTGGGAGTCTTTATC
BS04062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-PA | 1545 | CG12042-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-RA | 1782 | CG12042-RA | 85..910 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7668120..7668945 | 842..17 | 4130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:23:25 has no hits.
BS04062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:16 Download gff for
BS04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:51 Download gff for
BS04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:56 Download gff for
BS04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 77..910 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:08 Download gff for
BS04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 77..910 | 8..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:08 Download gff for
BS04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7668120..7668953 | 8..842 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:56 Download gff for
BS04062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3555625..3556458 | 8..842 | 99 | | Minus |
BS04062.complete Sequence
1577 bp (1577 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634851
> BS04062.complete
GAAGTTATCAGTCGACATGAGCTTCATGCAACCGAGTCCCGTTAAGTACG
CGTGCTCCTGCGGCATACTGAACCCGATCAACACGCTGTTCTTCTGCCGC
CACTGCCCCAAGCTGCGCTGTGGCTTCTGCGTGACGCATGAGATCGAGTC
GCACTTCTGCTCCAACTGCCTGGAAAACATTCCCTCCACAGAGGCGCGCC
ACAAGAAGAACTGTTGTGCGAACTGCTTCGACTGTCCTTGCTGCCAGCAC
ACCCTTTCCGCCAGAGCATCTACCGTTCCGGTGGTGCGCAAGTCGGAGGA
GGCGAAGGAACCAAAGGATGGCGACTCCAAGGGCGAAGCCACGCCCCCAG
TCCCGGCGAGCAGCAAGCCCTCTGCGGTGCCCACCACAAAAAAGATGTAC
TATTTGTCGTGCTTGTCCTGCCGATGGACCACGCGAGATGTGGGCATTCC
CGACCAAGGCGTGGCCACGGGCACCTGGCCGGATAACGAGTGCTTGTACC
AGGCGCGATTTAATGCTCTGGTCGAGTACTTCCAGGCGGTGGTGCTGCAG
GAGAAGCAGGAGAAACTGGAGTTCATGCGGCGCAAGGCACCCAAGCAGCA
CAAGTTTCCCAGTCTGACGGATCGCACTGGACTAACCGTCTCACTTATTC
GCCGCCAAATCGGCTGGAACGACAAGGCTCCCAAGGCTAAAGCCGTGATA
ACGCCGGCAGAGGCCACGGCGGAGGTGGAGGGCCTGCCGGAGAACATTTT
CACGGAACCCTTGAACTTGCGGAATGTGACAACCATCACCCAGCGACATA
GCCAGCCGGCGGACCAGCCCACGGCCGTTGGGAGTCTTTATCCTCAGCGC
AGGTCCCTGTGGATTAAGCGGTCGCTTCGTTGCCGCCAGTGCGAGCACAA
TCTAATCAAACCGGAGTACCATCCCACATCGATAAAGTACCGCATTCAGC
ACTTCGCCAGCTACCATGTTCCTGAAGTGGTGATGGTGCGCTGCGAGCAG
CCACTGGTGGCAGGAAAAAGCAACGCCATTTTGCTGAAGCTCACGAATCC
GACTATATACGATATGACAATTCGACTGTTGACTGCATCTCCTCCTGAGG
ATCCACAGCTGTCAACAGAGGCCACTCGTGTTGCGAAAGAGGAACCCATT
TCTTCGTCCCCACTTCTAAAAGCAGTGGGCATCACACTGTCGCGTCAAAA
CTCAACACGGGAGGTAAAACGAGATGTGATTGATATATCCAATGCCGAAA
TAGTTCCGTTGGAGAGCGAGTTCGTTCTGAACCAGCGCGATGACTCGAAA
GAGTTCGACGAGGACGTGCAACTGTCCACCGAGGAGCCCAAGTTTATTGT
CTGGCGGAAGGGCAACAAGGTGCTTTTGCGGCTACAGTTTACCCCAGCAG
AGGAGCTGTCCGGATTAGCAGACGTCGTTCTGGGCTTCTATATGCAGTAC
ACATACGTCAACACCGTAAACAATGCGCAAGAGAAGAGGGAACCCACAAC
CCATGTGCTCCACTCCAGGGTGTTTATCACGGCGGGAGCAACTGAGCAGA
AAGCCAACTAAAAGCTTTCTAGACCAT
BS04062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-RA | 1545 | CG12042-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-RA | 1782 | CG12042-RA | 85..1630 | 17..1562 | 7730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7667400..7668945 | 1562..17 | 7730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:21:48 has no hits.
BS04062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:38 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 1..1545 | 17..1561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:14 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 77..1632 | 8..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:15 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 85..1627 | 17..1559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:38 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 77..1632 | 8..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:50 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12042-RA | 85..1627 | 17..1559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:50 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7667403..7668945 | 17..1559 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:15 Download gff for
BS04062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3554908..3556450 | 17..1559 | 100 | | Minus |
BS04062.pep Sequence
Translation from 16 to 1560
> BS04062.pep
MSFMQPSPVKYACSCGILNPINTLFFCRHCPKLRCGFCVTHEIESHFCSN
CLENIPSTEARHKKNCCANCFDCPCCQHTLSARASTVPVVRKSEEAKEPK
DGDSKGEATPPVPASSKPSAVPTTKKMYYLSCLSCRWTTRDVGIPDQGVA
TGTWPDNECLYQARFNALVEYFQAVVLQEKQEKLEFMRRKAPKQHKFPSL
TDRTGLTVSLIRRQIGWNDKAPKAKAVITPAEATAEVEGLPENIFTEPLN
LRNVTTITQRHSQPADQPTAVGSLYPQRRSLWIKRSLRCRQCEHNLIKPE
YHPTSIKYRIQHFASYHVPEVVMVRCEQPLVAGKSNAILLKLTNPTIYDM
TIRLLTASPPEDPQLSTEATRVAKEEPISSSPLLKAVGITLSRQNSTREV
KRDVIDISNAEIVPLESEFVLNQRDDSKEFDEDVQLSTEEPKFIVWRKGN
KVLLRLQFTPAEELSGLADVVLGFYMQYTYVNTVNNAQEKREPTTHVLHS
RVFITAGATEQKAN*
BS04062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12042-PA | 514 | CG12042-PA | 1..514 | 1..514 | 2722 | 100 | Plus |
