Clone BS04065 Report

Search the DGRC for BS04065

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptUbcE2H-RA
Protein status:BS04065.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04065.3prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-01

> BS04065.3prime
ATGGTCTAGAAAGCTTTTATAATTCCATGTCCCTGGCCTCATCCTCACTG
TAGTCGGACATGCTCGACTCGCTGTCGCTGCTCTCCCGCTCCTGCTGCGC
CGCCCGCAACGCGTCCTCGGTGGCATAGCGCTGCACATAGTCGGCCACCT
TGCGATGATACTCCTCCGGCTCGTGCAGGTACAATGCGGCCGCATCCCGA
TTGAGCGGATCGACCGGATTGGGATATGTGAGCAGCTGCGGCAAGAACGA
TTCAAATATGTTCGATAGATCGTACAACGCCGTCCAGGCCTGATTGATAA
CATCCAGGCACACCGTACCCGAGGATTCGTCAATGTTCGGATGGTAGATC
TTGTTCACAAAACCAATGCTCGGTGACTTGAAGGGATAGTTGTCGGGCAG
GTAGACGCGCACCTTCCACACGCCGCCCTCGTAGGGCGTCTCCGTTGGAC
CGAAGAACTTGACGTGGAACTCGTTGAGGCCTCCCAGGATGGTCACCTCG
TGCTTTGATTCGATCAGCTTGATCACATCGTTGTCCATGCGTCGCTTTCC
GGCACTGGGCGAGGACATGTCGACTGATAACT

BS04065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2257-PA 552 Ubc-E2H-RA 1..552 568..17 2760 100 Minus
CG2257-PC 552 Ubc-E2H-RC 1..552 568..17 2760 100 Minus
CG2257-PB 552 Ubc-E2H-RB 1..552 568..17 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 2292 CG2257-RB 441..992 568..17 2760 100 Minus
UbcE2H-RC 2328 CG2257-RC 477..1028 568..17 2760 100 Minus
UbcE2H-RA 2894 CG2257-RA 578..1129 568..17 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8089309..8089860 17..568 2760 100 Plus
Blast to na_te.dros performed 2015-02-06 15:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 984..1035 569..518 107 67.3 Minus

BS04065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:17 Download gff for BS04065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PC 1..552 17..568 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:53 Download gff for BS04065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PB 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:11 Download gff for BS04065.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 571..1129 17..576 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:48 Download gff for BS04065.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcE2H-RA 571..1129 17..576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:48 Download gff for BS04065.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8089309..8089867 17..576 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:11 Download gff for BS04065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7983342..7983900 17..576 99   Plus

BS04065.5prime Sequence

582 bp (581 high quality bases) assembled on 2005-11-29

> BS04065.5prime
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTATAAAAGCTTTCTAGACC

BS04065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2257-PA 552 Ubc-E2H-RA 1..552 17..568 2760 100 Plus
CG2257-PC 552 Ubc-E2H-RC 1..552 17..568 2760 100 Plus
CG2257-PB 552 Ubc-E2H-RB 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 2292 CG2257-RB 441..992 17..568 2760 100 Plus
UbcE2H-RC 2328 CG2257-RC 477..1028 17..568 2760 100 Plus
UbcE2H-RA 2894 CG2257-RA 578..1129 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8089309..8089860 568..17 2760 100 Minus
Blast to na_te.dros performed 2015-02-13 02:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 984..1035 16..67 107 67.3 Plus

BS04065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:18 Download gff for BS04065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PC 1..552 17..568 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:54 Download gff for BS04065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2257-PB 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:52 Download gff for BS04065.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 571..1129 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:23 Download gff for BS04065.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcE2H-RA 571..1129 9..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:23 Download gff for BS04065.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8089309..8089867 9..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:52 Download gff for BS04065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7983342..7983900 9..568 99   Minus

BS04065.complete Sequence

584 bp (584 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634852

> BS04065.complete
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTATAAAAGCTTTCTAGACCAT

BS04065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 552 CG2257-PB 1..552 17..568 2760 100 Plus
UbcE2H-RC 552 CG2257-PC 1..552 17..568 2760 100 Plus
UbcE2H-RA 552 CG2257-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-RB 2292 CG2257-RB 441..992 17..568 2760 100 Plus
UbcE2H-RC 2328 CG2257-RC 477..1028 17..568 2760 100 Plus
UbcE2H-RA 2894 CG2257-RA 578..1129 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8089309..8089860 568..17 2760 100 Minus
Blast to na_te.dros performed 2014-11-27 07:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 984..1035 16..67 107 67.3 Plus

BS04065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:38 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RB 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:28 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 571..1129 9..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:42 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RA 578..1127 17..566 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:38 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc-E2H-RB 413..971 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:11 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
UbcE2H-RA 578..1127 17..566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:11 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
X 8089311..8089860 17..566 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:42 Download gff for BS04065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7983344..7983893 17..566 100   Minus

BS04065.pep Sequence

Translation from 16 to 567

> BS04065.pep
MSSPSAGKRRMDNDVIKLIESKHEVTILGGLNEFHVKFFGPTETPYEGGV
WKVRVYLPDNYPFKSPSIGFVNKIYHPNIDESSGTVCLDVINQAWTALYD
LSNIFESFLPQLLTYPNPVDPLNRDAAALYLHEPEEYHRKVADYVQRYAT
EDALRAAQQERESSDSESSMSDYSEDEARDMEL*

BS04065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
UbcE2H-PB 183 CG2257-PB 1..183 1..183 966 100 Plus
UbcE2H-PC 183 CG2257-PC 1..183 1..183 966 100 Plus
UbcE2H-PA 183 CG2257-PA 1..183 1..183 966 100 Plus
CG14739-PA 206 CG14739-PA 12..190 4..180 358 41.7 Plus
ben-PE 151 CG18319-PE 35..151 34..152 268 42.9 Plus