Clone Sequence Records
BS04065.3prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-01
> BS04065.3prime
ATGGTCTAGAAAGCTTTTATAATTCCATGTCCCTGGCCTCATCCTCACTG
TAGTCGGACATGCTCGACTCGCTGTCGCTGCTCTCCCGCTCCTGCTGCGC
CGCCCGCAACGCGTCCTCGGTGGCATAGCGCTGCACATAGTCGGCCACCT
TGCGATGATACTCCTCCGGCTCGTGCAGGTACAATGCGGCCGCATCCCGA
TTGAGCGGATCGACCGGATTGGGATATGTGAGCAGCTGCGGCAAGAACGA
TTCAAATATGTTCGATAGATCGTACAACGCCGTCCAGGCCTGATTGATAA
CATCCAGGCACACCGTACCCGAGGATTCGTCAATGTTCGGATGGTAGATC
TTGTTCACAAAACCAATGCTCGGTGACTTGAAGGGATAGTTGTCGGGCAG
GTAGACGCGCACCTTCCACACGCCGCCCTCGTAGGGCGTCTCCGTTGGAC
CGAAGAACTTGACGTGGAACTCGTTGAGGCCTCCCAGGATGGTCACCTCG
TGCTTTGATTCGATCAGCTTGATCACATCGTTGTCCATGCGTCGCTTTCC
GGCACTGGGCGAGGACATGTCGACTGATAACT
BS04065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2257-PA | 552 | Ubc-E2H-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
CG2257-PC | 552 | Ubc-E2H-RC | 1..552 | 568..17 | 2760 | 100 | Minus |
CG2257-PB | 552 | Ubc-E2H-RB | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 2292 | CG2257-RB | 441..992 | 568..17 | 2760 | 100 | Minus |
UbcE2H-RC | 2328 | CG2257-RC | 477..1028 | 568..17 | 2760 | 100 | Minus |
UbcE2H-RA | 2894 | CG2257-RA | 578..1129 | 568..17 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8089309..8089860 | 17..568 | 2760 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 15:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 569..518 | 107 | 67.3 | Minus |
BS04065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:17 Download gff for
BS04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PC | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:53 Download gff for
BS04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PB | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:12:11 Download gff for
BS04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 571..1129 | 17..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:48 Download gff for
BS04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2H-RA | 571..1129 | 17..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:48 Download gff for
BS04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8089309..8089867 | 17..576 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:12:11 Download gff for
BS04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7983342..7983900 | 17..576 | 99 | | Plus |
BS04065.5prime Sequence
582 bp (581 high quality bases) assembled on 2005-11-29
> BS04065.5prime
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTATAAAAGCTTTCTAGACC
BS04065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2257-PA | 552 | Ubc-E2H-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG2257-PC | 552 | Ubc-E2H-RC | 1..552 | 17..568 | 2760 | 100 | Plus |
CG2257-PB | 552 | Ubc-E2H-RB | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 2292 | CG2257-RB | 441..992 | 17..568 | 2760 | 100 | Plus |
UbcE2H-RC | 2328 | CG2257-RC | 477..1028 | 17..568 | 2760 | 100 | Plus |
UbcE2H-RA | 2894 | CG2257-RA | 578..1129 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8089309..8089860 | 568..17 | 2760 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 02:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 16..67 | 107 | 67.3 | Plus |
BS04065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:18 Download gff for
BS04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PC | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:54 Download gff for
BS04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2257-PB | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:52 Download gff for
BS04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 571..1129 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:23 Download gff for
BS04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2H-RA | 571..1129 | 9..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:23 Download gff for
BS04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8089309..8089867 | 9..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:52 Download gff for
BS04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7983342..7983900 | 9..568 | 99 | | Minus |
BS04065.complete Sequence
584 bp (584 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634852
> BS04065.complete
GAAGTTATCAGTCGACATGTCCTCGCCCAGTGCCGGAAAGCGACGCATGG
ACAACGATGTGATCAAGCTGATCGAATCAAAGCACGAGGTGACCATCCTG
GGAGGCCTCAACGAGTTCCACGTCAAGTTCTTCGGTCCAACGGAGACGCC
CTACGAGGGCGGCGTGTGGAAGGTGCGCGTCTACCTGCCCGACAACTATC
CCTTCAAGTCACCGAGCATTGGTTTTGTGAACAAGATCTACCATCCGAAC
ATTGACGAATCCTCGGGTACGGTGTGCCTGGATGTTATCAATCAGGCCTG
GACGGCGTTGTACGATCTATCGAACATATTTGAATCGTTCTTGCCGCAGC
TGCTCACATATCCCAATCCGGTCGATCCGCTCAATCGGGATGCGGCCGCA
TTGTACCTGCACGAGCCGGAGGAGTATCATCGCAAGGTGGCCGACTATGT
GCAGCGCTATGCCACCGAGGACGCGTTGCGGGCGGCGCAGCAGGAGCGGG
AGAGCAGCGACAGCGAGTCGAGCATGTCCGACTACAGTGAGGATGAGGCC
AGGGACATGGAATTATAAAAGCTTTCTAGACCAT
BS04065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 552 | CG2257-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
UbcE2H-RC | 552 | CG2257-PC | 1..552 | 17..568 | 2760 | 100 | Plus |
UbcE2H-RA | 552 | CG2257-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-RB | 2292 | CG2257-RB | 441..992 | 17..568 | 2760 | 100 | Plus |
UbcE2H-RC | 2328 | CG2257-RC | 477..1028 | 17..568 | 2760 | 100 | Plus |
UbcE2H-RA | 2894 | CG2257-RA | 578..1129 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8089309..8089860 | 568..17 | 2760 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 984..1035 | 16..67 | 107 | 67.3 | Plus |
BS04065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:38 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RB | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:28 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 571..1129 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:42 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RA | 578..1127 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:38 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc-E2H-RB | 413..971 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:11 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2H-RA | 578..1127 | 17..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:11 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8089311..8089860 | 17..566 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:42 Download gff for
BS04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7983344..7983893 | 17..566 | 100 | | Minus |
BS04065.pep Sequence
Translation from 16 to 567
> BS04065.pep
MSSPSAGKRRMDNDVIKLIESKHEVTILGGLNEFHVKFFGPTETPYEGGV
WKVRVYLPDNYPFKSPSIGFVNKIYHPNIDESSGTVCLDVINQAWTALYD
LSNIFESFLPQLLTYPNPVDPLNRDAAALYLHEPEEYHRKVADYVQRYAT
EDALRAAQQERESSDSESSMSDYSEDEARDMEL*
BS04065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2H-PB | 183 | CG2257-PB | 1..183 | 1..183 | 966 | 100 | Plus |
UbcE2H-PC | 183 | CG2257-PC | 1..183 | 1..183 | 966 | 100 | Plus |
UbcE2H-PA | 183 | CG2257-PA | 1..183 | 1..183 | 966 | 100 | Plus |
CG14739-PA | 206 | CG14739-PA | 12..190 | 4..180 | 358 | 41.7 | Plus |
ben-PE | 151 | CG18319-PE | 35..151 | 34..152 | 268 | 42.9 | Plus |