Clone Sequence Records
BS04067.3prime Sequence
869 bp (831 high quality bases) assembled on 2005-12-01
> BS04067.3prime
ATGGTCTAGAAAGCTTTTAATCTTCTTGCGCTTGGTAAATGTTCTGATTG
CGTCGCTTAAGTTTTTTCACATTGGGACTAGCGGGCACTGATGCAGGTTC
CTCTACATGAGGCGTTTCCGTTGCTATAATTGCTTCTTCAGCTTCCTCCT
CGGGCAGGTCTATCACGTTTTCATCGGTGGTATCAGCTGCTGCAGTTGTA
GGTGCTGGCAGGGATAAGTTAAGTTTCCTTTTAGTTGGCGTAACCAATGG
TTCAGCCACGTCTTCTTCCACCGCCTGCAGCTTAGAACTTTTTGTTTCCC
TATCCTTGCATTCGGTAGCTCCCACCGCAGGCAGATCTAGGCCATTCGCC
AACAAAACTAAGCACAGCGGATCGTCTATACCCAGAGTGGCACAGAACGT
ATTGCTCTGGGGGTTTAGTTGAACCTTGGGTTGATCCACAAACATGTGCT
TATAATCAGACTGCTCCGCGGGATCGAAAGCTGGCACTGTGCGCTCAAAG
TTCTCGGGGACTTGAAGTTTCTGAAACTTTGCGGTCACTGCTTCTAGTTC
TTCTTCAGTGGGGGTAAAGTTTGATCGCTCTGTAAACTCTCCCGCCTTTT
TTCCGGGCAGGTAATAATAATTCTCCTTCACTGAAATCAAGTGATTTGTA
CTGTGCAAGATGGCTAGCCACTCTGCGTCGTATTCCAGGCGGGGAGTGCC
TTCGATGGGGTCACTGGGTACCTCTACCACTTGCAGGAAAGCACGACGTG
GCAGGCATTTGTCGAGAGCCAGAAACTTGGTCACGGGAACAGATTTGGAT
GGTGGAGGTACAGGAGCAGCTTTCTTTACCTTCTCCCTTTCCTCGTCTTC
ATCTTCACTGCTGCTGCTG
BS04067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7942-PA | 1605 | CG7942-RA | 753..1605 | 869..17 | 4265 | 100 | Minus |
| CG7942-PB | 1605 | CG7942-RB | 753..1605 | 869..17 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 845..1698 | 869..16 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122726..8123579 | 869..16 | 4270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 03:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 29..81 | 662..610 | 129 | 75.9 | Minus |
BS04067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:21 Download gff for
BS04067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PA | 753..1605 | 17..869 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:57:58 Download gff for
BS04067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PB | 753..1605 | 17..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:12:53 Download gff for
BS04067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 845..1698 | 16..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:21:58 Download gff for
BS04067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 845..1698 | 16..869 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:21:58 Download gff for
BS04067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8122726..8123579 | 16..869 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:12:53 Download gff for
BS04067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115826..8116679 | 16..869 | 100 | | Minus |
BS04067.5prime Sequence
832 bp (724 high quality bases) assembled on 2005-12-01
> BS04067.5prime
GAAGTTATCAGTCGACATGAAAATAGCTGTCGAAGGATGTGCACATGGCG
AGCTGGAACGAATATACGACACCATAGAGGGCATCGAAAAGGTTGGCGGC
ACCAAGATCGACTTGTTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAA
TCTGGAGGATTTGCAGACGATGGCTGTACCAAAGAAGTACCTGGATATGT
GCTCCTTTTACAAATACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACC
ATATTCATTGGCGGCAACCATGAGGCCTCCAATTACCTGCAGGAGCTCCC
ATACGGCGGTTGGGTGGCTCCAAATATTTACTACCTTGGTTATGCCGGCG
TCGTCAATGTAAACGGTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAG
GGTCACGACTTTTTGCGCGGCCATCACGAATTCCCTCCGTATACCGATTC
CACGTGTCGCAGTGTCTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGA
AACAAATTTCCGGGCGAGTTGATATTTTCCTGTCCCACGACTGGCCCACC
GGCATCTATGAATACGGAAACAAGGCGCAACTGCTCCGCAAGAAACCATT
TTTTGCTGCAGACATGGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGG
AGTTACTGAAAGCGGTCCAACCGGCCTACTGGTTTGCTGCCCATTTGCAT
TGCAAGTTTGCCGCTTTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGA
TGCTGAATCTTCCTCTTCCAGCAGCAGCAGTGAAGATGAAGACGAGGAAA
GGGAGAAAGTAAAGAAAGCTGCTCCTGTACCT
BS04067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7942-PA | 1605 | CG7942-RA | 1..816 | 17..832 | 4055 | 99.8 | Plus |
| CG7942-PB | 1605 | CG7942-RB | 1..816 | 17..832 | 4055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..908 | 16..832 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8122789 | 206..832 | 3090 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 16..213 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:27:53 has no hits.
BS04067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:22 Download gff for
BS04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:00 Download gff for
BS04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PB | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:32:43 Download gff for
BS04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..908 | 16..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:13 Download gff for
BS04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..908 | 16..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:13 Download gff for
BS04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121918..8122115 | 16..213 | 100 | -> | Plus |
| 3L | 8122171..8122789 | 214..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:32:43 Download gff for
BS04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115018..8115215 | 16..213 | 100 | -> | Plus |
| arm_3L | 8115271..8115889 | 214..832 | 99 | | Plus |
BS04067.complete Sequence
1637 bp assembled on 2009-02-12
> BS04067.complete
GAAGTTATCAGTCGACATGAAAATAGCTGTCGAAGGATGTGCACATGGCG
AGCTGGAACGAATATACGACACCATAGAGGGCATCGAAAAGGTTGGCGGC
ACCAAGATCGACTTGTTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAA
TCTGGAGGATTTGCAGACGATGGCTGTACCAAAGAAGTACCTGGATATGT
GCTCCTTTTACAAATACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACC
ATATTCATTGGCGGCAACCATGAGGCCTCCAATTACCTGCAGGAGCTCCC
ATACGGCGGTTGGGTGGCTCCAAATATTTACTACCTTGGTTATGCCGGCG
TCGTCAATGTAAACGGTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAG
GGTCACGACTTTTTGCGCGGCCATCACGAATTCCCTCCGTATACCGATTC
CACGTGTCGCAGTGTCTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGA
AACAAATTTCCGGGCGAGTTGATATTTTCCTGTCCCACGACTGGCCCACC
GGCATCTATGAATACGGAAACAAGGCGCAACTGCTCCGCAAGAAACCATT
TTTTGCTGCAGACATGGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGG
AGTTACTGAAAGCGGTCCAACCGGCCTACTGGTTTGCTGCCCATTTGCAT
TGCAAGTTTGCCGCTTTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGA
TGCTGAATCTTCCTCTTCCAGCAGCAGCAGTGAAGATGAAGACGAGGAAA
GGGAGAAGGTAAAGAAAGCTGCTCCTGTACCTCCACCATCCAAATCTGTT
CCCGTGACCAAGTTTCTGGCTCTCGACAAATGCCTGCCACGTCGTGCTTT
CCTGCAAGTGGTAGAGGTACCCAGTGACCCCATCGAAGGCACTCCCCGCC
TGGAATACGACGCAGAGTGGCTAGCCATCTTGCACAGTACAAATCACTTG
ATTTCAGTGAAGGAGAATTATTATTACCTGCCCGGAAAAAAGGCGGGAGA
GTTTACAGAGCGATCAAACTTTACCCCCACTGAAGAAGAACTAGAAGCAG
TGACCGCAAAGTTTCAGAAACTTCAAGTCCCCGAGAACTTTGAGCGCACA
GTGCCAGCTTTCGATCCCGCGGAGCAGTCTGATTATAAGCACATGTTTGT
GGATCAACCCAAGGTTCAACTAAACCCCCAGAGCAATACGTTCTGTGCCA
CTCTGGGTATAGACGATCCGCTGTGCTTAGTTTTGTTGGCGAATGGCCTA
GATCTGCCTGCGGTGGGAGCTACCGAATGCAAGGATAGGGAAACAAAAAG
TTCTAAGCTGCAGGCGGTGGAAGAAGACGTGGCTGAACCATTGGTTACGC
CAACTAAAAGGAAACTTAACTTATCCCTGCCAGCACCTACAACTGCAGCA
GCTGATACCACCGATGAAAACGTGATAGACCTGCCCGAGGAGGAAGCTGA
AGAAGCAATTATAGCAACGGAAACGCCTCATGTAGAGGAACCTGCATCAG
TGCCCGCTAGTCCCAATGTGAAAAAACTTAAGCGACGCAATCAGAACATT
TACCAAGCGCAAGAAGATTAAAAGCTTTCTAGACCAT
BS04067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1605 | CG7942-PB | 1..1605 | 17..1621 | 8025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..1698 | 16..1622 | 8035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8123579 | 206..1622 | 7055 | 99.9 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 16..213 | 990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 29..81 | 976..1028 | 129 | 75.9 | Plus |
BS04067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:41 Download gff for
BS04067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 78..1680 | 17..1619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:00 Download gff for
BS04067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 93..1695 | 17..1619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:41 Download gff for
BS04067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 93..1695 | 17..1619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:41 Download gff for
BS04067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121919..8122115 | 17..213 | 100 | -> | Plus |
| 3L | 8122171..8123576 | 214..1619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:00 Download gff for
BS04067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115019..8115215 | 17..213 | 100 | -> | Plus |
| arm_3L | 8115271..8116676 | 214..1619 | 100 | | Plus |
BS04067.pep Sequence
Translation from 16 to 1620
> BS04067.pep
MKIAVEGCAHGELERIYDTIEGIEKVGGTKIDLLLCCGDFQSTRNLEDLQ
TMAVPKKYLDMCSFYKYYSGELVAPVLTIFIGGNHEASNYLQELPYGGWV
APNIYYLGYAGVVNVNGVRIAGISGIFKGHDFLRGHHEFPPYTDSTCRSV
YHVRQLEVFRLKQISGRVDIFLSHDWPTGIYEYGNKAQLLRKKPFFAADM
ESGKLGSQPLEELLKAVQPAYWFAAHLHCKFAALVPHNHSQKLGDAESSS
SSSSSEDEDEEREKVKKAAPVPPPSKSVPVTKFLALDKCLPRRAFLQVVE
VPSDPIEGTPRLEYDAEWLAILHSTNHLISVKENYYYLPGKKAGEFTERS
NFTPTEEELEAVTAKFQKLQVPENFERTVPAFDPAEQSDYKHMFVDQPKV
QLNPQSNTFCATLGIDDPLCLVLLANGLDLPAVGATECKDRETKSSKLQA
VEEDVAEPLVTPTKRKLNLSLPAPTTAAADTTDENVIDLPEEEAEEAIIA
TETPHVEEPASVPASPNVKKLKRRNQNIYQAQED*
BS04067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-PB | 534 | CG7942-PB | 1..534 | 1..534 | 2807 | 100 | Plus |
