Clone BS04068 Report

Search the DGRC for BS04068

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptRtnl1-RB
Protein status:BS04068.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04068.3prime Sequence

735 bp (734 high quality bases) assembled on 2005-12-01

> BS04068.3prime
ATGGTCTAGAAAGCTTTTACTTGTCCTTCTCAGACTCGGCAGCGGCCTCA
GGCTTCTTGTTGCCAATGGGGATGGCCACTCGGATCTTGTCGGTGATTTC
TGTCAATTTGCTGCGCACCAGATCCAAGTGAGTGTCGATCGATTGCTTGT
TGTTCTCGTAGACCTTGGGCAAGGTAAACAGCGAGACAAAGGCCAAGATG
ACCAGAGTCATGCCATTGAACCAGGCACCCACGTAGGTGAAGACCCACAG
AATGACGCCGAACTTGATCGAATCGATGATATCCTCAACAAGAAACAGAC
GCCTCAGCTCGGAGATGAAGCCATTGATATGTGCCACAGCCACGCCGGCA
ATGTTCTGTACCTTTTCGTGCGACAGCGTCAGATCCAGCTCCAGGTAATC
CTTAAAGGGGTGACCCTCGTTTGTCTTTTGCACGGCCTGTGTCACAGATT
TGTAGATTCTGAAGGCGACGGTGCCGAAGAGGGTTAGGAGCGACAAGTAG
GCGAACACGCTGATCACCGAGAAGCTGGAGATGGCCGCCAGTGTGATCAG
GCCAGCGCCGAAGACAATGCCGGATTTCTTCACATCGCGCCAGTAGATAA
GGGATTCCACTTGCGGGTGCAAACGTTCGGGCTTAAACCAGGCATTGGGA
TCGAGTATGGAGCAAATCAATGGGCGCTGCTTGCACACGCCATTCTGACC
GGTTTCACCAAATGCGGACATGTCGACTGATAACT

BS04068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33113-PE 705 Rtnl1-RE 1..705 721..17 3500 99.8 Minus
CG33113-PB 705 Rtnl1-RB 1..705 721..17 3500 99.8 Minus
CG33113-PA 669 Rtnl1-RA 75..669 611..17 2950 99.8 Minus
CG33113-PF 1788 Rtnl1-RF 1195..1788 610..17 2945 99.8 Minus
CG33113-PD 675 Rtnl1-RD 83..675 609..17 2940 99.8 Minus
CG33113-PC 609 Rtnl1-RC 17..609 609..17 2940 99.8 Minus
CG33113-PG 675 Rtnl1-RG 83..675 609..17 2940 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 2311 CG33113-RJ 207..912 721..16 3515 99.9 Minus
Rtnl1-RI 1495 CG33113-RI 224..929 721..16 3515 99.9 Minus
Rtnl1-RB 1539 CG33113-RB 268..973 721..16 3515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994996 401..611 1055 100 Plus
2L 23513712 2L 4994508..4994716 193..401 1045 100 Plus
2L 23513712 2L 4994338..4994445 86..193 540 100 Plus
2L 23513712 2L 5004614..5004689 646..721 380 100 Plus
2L 23513712 2L 4994207..4994277 16..86 340 98.6 Plus
2L 23513712 2L 5004172..5004207 610..645 180 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:05:11 has no hits.

BS04068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:23 Download gff for BS04068.3prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-PE 1..705 17..721 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:01 Download gff for BS04068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33113-PE 1..705 17..721 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:20:48 Download gff for BS04068.3prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..973 16..729 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:04 Download gff for BS04068.3prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..973 16..729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:48:04 Download gff for BS04068.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5004614..5004693 646..729 95   Plus
2L 4994207..4994277 16..86 98 <- Plus
2L 4994339..4994444 87..192 100 <- Plus
2L 4994508..4994716 193..401 100 <- Plus
2L 4994787..4994994 402..609 100 <- Plus
2L 5004172..5004207 610..645 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:20:48 Download gff for BS04068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994207..4994277 16..86 98 <- Plus
arm_2L 4994339..4994444 87..192 100 <- Plus
arm_2L 4994508..4994716 193..401 100 <- Plus
arm_2L 4994787..4994994 402..609 100 <- Plus
arm_2L 5004172..5004207 610..645 100 <- Plus
arm_2L 5004614..5004693 646..729 95   Plus

BS04068.5prime Sequence

735 bp (734 high quality bases) assembled on 2005-11-29

> BS04068.5prime
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACC

BS04068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33113-PE 705 Rtnl1-RE 1..705 17..721 3525 100 Plus
CG33113-PB 705 Rtnl1-RB 1..705 17..721 3525 100 Plus
CG33113-PA 669 Rtnl1-RA 75..669 127..721 2975 100 Plus
CG33113-PF 1788 Rtnl1-RF 1195..1788 128..721 2970 100 Plus
CG33113-PD 675 Rtnl1-RD 83..675 129..721 2965 100 Plus
CG33113-PC 609 Rtnl1-RC 17..609 129..721 2965 100 Plus
CG33113-PG 675 Rtnl1-RG 83..675 129..721 2965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 2311 CG33113-RJ 207..912 17..722 3530 100 Plus
Rtnl1-RI 1495 CG33113-RI 224..929 17..722 3530 100 Plus
Rtnl1-RB 1539 CG33113-RB 268..973 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994996 337..127 1055 100 Minus
2L 23513712 2L 4994508..4994716 545..337 1045 100 Minus
2L 23513712 2L 4994338..4994445 652..545 540 100 Minus
2L 23513712 2L 5004614..5004689 92..17 380 100 Minus
2L 23513712 2L 4994207..4994277 722..652 355 100 Minus
2L 23513712 2L 5004172..5004207 128..93 180 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:48:50 has no hits.

BS04068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:24 Download gff for BS04068.5prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-PE 1..705 17..721 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:03 Download gff for BS04068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33113-PE 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:34:40 Download gff for BS04068.5prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..973 9..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:32 Download gff for BS04068.5prime
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 261..973 9..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:32 Download gff for BS04068.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4994207..4994277 652..722 100 <- Minus
2L 4994339..4994444 546..651 100 <- Minus
2L 4994508..4994716 337..545 100 <- Minus
2L 4994787..4994994 129..336 100 <- Minus
2L 5004172..5004207 93..128 100 <- Minus
2L 5004614..5004693 9..92 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:34:40 Download gff for BS04068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994207..4994277 652..722 100 <- Minus
arm_2L 4994339..4994444 546..651 100 <- Minus
arm_2L 4994508..4994716 337..545 100 <- Minus
arm_2L 4994787..4994994 129..336 100 <- Minus
arm_2L 5004172..5004207 93..128 100 <- Minus
arm_2L 5004614..5004693 9..92 95   Minus

BS04068.complete Sequence

737 bp (737 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634853

> BS04068.complete
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACCAT

BS04068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 705 CG33113-PJ 1..705 17..721 3525 100 Plus
Rtnl1-RI 705 CG33113-PI 1..705 17..721 3525 100 Plus
Rtnl1-RB 705 CG33113-PB 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-RJ 2311 CG33113-RJ 207..912 17..722 3530 100 Plus
Rtnl1-RI 1495 CG33113-RI 224..929 17..722 3530 100 Plus
Rtnl1-RB 1539 CG33113-RB 268..973 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4994786..4994996 337..127 1055 100 Minus
2L 23513712 2L 4994508..4994716 545..337 1045 100 Minus
2L 23513712 2L 4994338..4994445 652..545 540 100 Minus
2L 23513712 2L 5004614..5004689 92..17 380 100 Minus
2L 23513712 2L 4994207..4994277 722..652 355 100 Minus
2L 23513712 2L 5004172..5004207 128..93 180 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:18:46 has no hits.

BS04068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:39 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:09 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 266..968 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:53 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 268..970 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:40 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 259..971 9..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:20 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
Rtnl1-RB 268..970 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:20 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4994210..4994277 652..719 100 <- Minus
2L 4994339..4994444 546..651 100 <- Minus
2L 4994508..4994716 337..545 100 <- Minus
2L 4994787..4994994 129..336 100 <- Minus
2L 5004172..5004207 93..128 100 <- Minus
2L 5004614..5004689 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:53 Download gff for BS04068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4994210..4994277 652..719 100 <- Minus
arm_2L 4994339..4994444 546..651 100 <- Minus
arm_2L 4994508..4994716 337..545 100 <- Minus
arm_2L 4994787..4994994 129..336 100 <- Minus
arm_2L 5004172..5004207 93..128 100 <- Minus
arm_2L 5004614..5004689 17..92 100   Minus

BS04068.pep Sequence

Translation from 16 to 720

> BS04068.pep
MSAFGETGQNGVCKQRPLICSILDPNAWFKPERLHPQVESLIYWRDVKKS
GIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKT
NEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIID
SIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLD
LVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK*

BS04068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rtnl1-PJ 234 CG33113-PJ 1..234 1..234 1192 100 Plus
Rtnl1-PI 234 CG33113-PI 1..234 1..234 1192 100 Plus
Rtnl1-PB 234 CG33113-PB 1..234 1..234 1192 100 Plus
Rtnl1-PE 234 CG33113-PE 1..234 1..234 1192 100 Plus
Rtnl1-PL 222 CG33113-PL 1..222 1..234 1093 94.4 Plus