Clone Sequence Records
BS04068.3prime Sequence
735 bp (734 high quality bases) assembled on 2005-12-01
> BS04068.3prime
ATGGTCTAGAAAGCTTTTACTTGTCCTTCTCAGACTCGGCAGCGGCCTCA
GGCTTCTTGTTGCCAATGGGGATGGCCACTCGGATCTTGTCGGTGATTTC
TGTCAATTTGCTGCGCACCAGATCCAAGTGAGTGTCGATCGATTGCTTGT
TGTTCTCGTAGACCTTGGGCAAGGTAAACAGCGAGACAAAGGCCAAGATG
ACCAGAGTCATGCCATTGAACCAGGCACCCACGTAGGTGAAGACCCACAG
AATGACGCCGAACTTGATCGAATCGATGATATCCTCAACAAGAAACAGAC
GCCTCAGCTCGGAGATGAAGCCATTGATATGTGCCACAGCCACGCCGGCA
ATGTTCTGTACCTTTTCGTGCGACAGCGTCAGATCCAGCTCCAGGTAATC
CTTAAAGGGGTGACCCTCGTTTGTCTTTTGCACGGCCTGTGTCACAGATT
TGTAGATTCTGAAGGCGACGGTGCCGAAGAGGGTTAGGAGCGACAAGTAG
GCGAACACGCTGATCACCGAGAAGCTGGAGATGGCCGCCAGTGTGATCAG
GCCAGCGCCGAAGACAATGCCGGATTTCTTCACATCGCGCCAGTAGATAA
GGGATTCCACTTGCGGGTGCAAACGTTCGGGCTTAAACCAGGCATTGGGA
TCGAGTATGGAGCAAATCAATGGGCGCTGCTTGCACACGCCATTCTGACC
GGTTTCACCAAATGCGGACATGTCGACTGATAACT
BS04068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33113-PE | 705 | Rtnl1-RE | 1..705 | 721..17 | 3500 | 99.8 | Minus |
CG33113-PB | 705 | Rtnl1-RB | 1..705 | 721..17 | 3500 | 99.8 | Minus |
CG33113-PA | 669 | Rtnl1-RA | 75..669 | 611..17 | 2950 | 99.8 | Minus |
CG33113-PF | 1788 | Rtnl1-RF | 1195..1788 | 610..17 | 2945 | 99.8 | Minus |
CG33113-PD | 675 | Rtnl1-RD | 83..675 | 609..17 | 2940 | 99.8 | Minus |
CG33113-PC | 609 | Rtnl1-RC | 17..609 | 609..17 | 2940 | 99.8 | Minus |
CG33113-PG | 675 | Rtnl1-RG | 83..675 | 609..17 | 2940 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 2311 | CG33113-RJ | 207..912 | 721..16 | 3515 | 99.9 | Minus |
Rtnl1-RI | 1495 | CG33113-RI | 224..929 | 721..16 | 3515 | 99.9 | Minus |
Rtnl1-RB | 1539 | CG33113-RB | 268..973 | 721..16 | 3515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994996 | 401..611 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 4994508..4994716 | 193..401 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 4994338..4994445 | 86..193 | 540 | 100 | Plus |
2L | 23513712 | 2L | 5004614..5004689 | 646..721 | 380 | 100 | Plus |
2L | 23513712 | 2L | 4994207..4994277 | 16..86 | 340 | 98.6 | Plus |
2L | 23513712 | 2L | 5004172..5004207 | 610..645 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:05:11 has no hits.
BS04068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:23 Download gff for
BS04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-PE | 1..705 | 17..721 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:01 Download gff for
BS04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33113-PE | 1..705 | 17..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:20:48 Download gff for
BS04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..973 | 16..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:04 Download gff for
BS04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..973 | 16..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:48:04 Download gff for
BS04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5004614..5004693 | 646..729 | 95 | | Plus |
2L | 4994207..4994277 | 16..86 | 98 | <- | Plus |
2L | 4994339..4994444 | 87..192 | 100 | <- | Plus |
2L | 4994508..4994716 | 193..401 | 100 | <- | Plus |
2L | 4994787..4994994 | 402..609 | 100 | <- | Plus |
2L | 5004172..5004207 | 610..645 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:20:48 Download gff for
BS04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994207..4994277 | 16..86 | 98 | <- | Plus |
arm_2L | 4994339..4994444 | 87..192 | 100 | <- | Plus |
arm_2L | 4994508..4994716 | 193..401 | 100 | <- | Plus |
arm_2L | 4994787..4994994 | 402..609 | 100 | <- | Plus |
arm_2L | 5004172..5004207 | 610..645 | 100 | <- | Plus |
arm_2L | 5004614..5004693 | 646..729 | 95 | | Plus |
BS04068.5prime Sequence
735 bp (734 high quality bases) assembled on 2005-11-29
> BS04068.5prime
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACC
BS04068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33113-PE | 705 | Rtnl1-RE | 1..705 | 17..721 | 3525 | 100 | Plus |
CG33113-PB | 705 | Rtnl1-RB | 1..705 | 17..721 | 3525 | 100 | Plus |
CG33113-PA | 669 | Rtnl1-RA | 75..669 | 127..721 | 2975 | 100 | Plus |
CG33113-PF | 1788 | Rtnl1-RF | 1195..1788 | 128..721 | 2970 | 100 | Plus |
CG33113-PD | 675 | Rtnl1-RD | 83..675 | 129..721 | 2965 | 100 | Plus |
CG33113-PC | 609 | Rtnl1-RC | 17..609 | 129..721 | 2965 | 100 | Plus |
CG33113-PG | 675 | Rtnl1-RG | 83..675 | 129..721 | 2965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 2311 | CG33113-RJ | 207..912 | 17..722 | 3530 | 100 | Plus |
Rtnl1-RI | 1495 | CG33113-RI | 224..929 | 17..722 | 3530 | 100 | Plus |
Rtnl1-RB | 1539 | CG33113-RB | 268..973 | 17..722 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994996 | 337..127 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 545..337 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 652..545 | 540 | 100 | Minus |
2L | 23513712 | 2L | 5004614..5004689 | 92..17 | 380 | 100 | Minus |
2L | 23513712 | 2L | 4994207..4994277 | 722..652 | 355 | 100 | Minus |
2L | 23513712 | 2L | 5004172..5004207 | 128..93 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:48:50 has no hits.
BS04068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:24 Download gff for
BS04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-PE | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:03 Download gff for
BS04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33113-PE | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:34:40 Download gff for
BS04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..973 | 9..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:32 Download gff for
BS04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 261..973 | 9..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:32 Download gff for
BS04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4994207..4994277 | 652..722 | 100 | <- | Minus |
2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
2L | 5004614..5004693 | 9..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:34:40 Download gff for
BS04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994207..4994277 | 652..722 | 100 | <- | Minus |
arm_2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
arm_2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
arm_2L | 5004614..5004693 | 9..92 | 95 | | Minus |
BS04068.complete Sequence
737 bp (737 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634853
> BS04068.complete
GAAGTTATCAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCG
TGTGCAAGCAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGG
TTTAAGCCCGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCG
CGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGG
CGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTC
CTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACA
GGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGC
TGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCT
GTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGT
TGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCA
CCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTT
GTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGAT
CGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACA
AGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCC
GAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACCAT
BS04068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 705 | CG33113-PJ | 1..705 | 17..721 | 3525 | 100 | Plus |
Rtnl1-RI | 705 | CG33113-PI | 1..705 | 17..721 | 3525 | 100 | Plus |
Rtnl1-RB | 705 | CG33113-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-RJ | 2311 | CG33113-RJ | 207..912 | 17..722 | 3530 | 100 | Plus |
Rtnl1-RI | 1495 | CG33113-RI | 224..929 | 17..722 | 3530 | 100 | Plus |
Rtnl1-RB | 1539 | CG33113-RB | 268..973 | 17..722 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4994786..4994996 | 337..127 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 545..337 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 652..545 | 540 | 100 | Minus |
2L | 23513712 | 2L | 5004614..5004689 | 92..17 | 380 | 100 | Minus |
2L | 23513712 | 2L | 4994207..4994277 | 722..652 | 355 | 100 | Minus |
2L | 23513712 | 2L | 5004172..5004207 | 128..93 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:18:46 has no hits.
BS04068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:39 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:09 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 266..968 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:53 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 268..970 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:40 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 259..971 | 9..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:20 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rtnl1-RB | 268..970 | 17..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:20 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4994210..4994277 | 652..719 | 100 | <- | Minus |
2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
2L | 5004614..5004689 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:53 Download gff for
BS04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4994210..4994277 | 652..719 | 100 | <- | Minus |
arm_2L | 4994339..4994444 | 546..651 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 337..545 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 129..336 | 100 | <- | Minus |
arm_2L | 5004172..5004207 | 93..128 | 100 | <- | Minus |
arm_2L | 5004614..5004689 | 17..92 | 100 | | Minus |
BS04068.pep Sequence
Translation from 16 to 720
> BS04068.pep
MSAFGETGQNGVCKQRPLICSILDPNAWFKPERLHPQVESLIYWRDVKKS
GIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKT
NEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIID
SIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLD
LVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK*
BS04068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rtnl1-PJ | 234 | CG33113-PJ | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PI | 234 | CG33113-PI | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PB | 234 | CG33113-PB | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PE | 234 | CG33113-PE | 1..234 | 1..234 | 1192 | 100 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 1..222 | 1..234 | 1093 | 94.4 | Plus |