Clone Sequence Records
BS04073.3prime Sequence
874 bp (836 high quality bases) assembled on 2005-12-01
> BS04073.3prime
ATGGTCTAGAAAGCTTTCATTTCCGGCTGCCAAAGAGTTTGCCGCGCGCA
TGCGATGTGGCTGGGGACAGAGCGTGCGAACTGGCGTGCCGTTTGATGCG
CGGAGTATCCCTTAGCTCTGAACCAGATGCGGAGGAGGCACTTGTGCAGG
CATTTGAATTGGCCGTCACATTGGTCAGGGTGGACACTCCGCTGCACGAA
TCCCCTGTGGTTGGCATTGATTTGTAGCGCTGCAGCGAGGTGCGCGGCTT
CTTCGGCATTGTGGCCTGCTGCACTGCCTCTTCTAGGGCGTTTAGCCAGT
CCTCGCCCTCGCTTTCGTCTTCCAGAAATTTCATGTAGAAGGAGGGTCGC
TTTGCCGTGTGGTGCCTAGTGGGTGTGGTGCTTGTGCTTGATTTGGGAGG
TTCATGGTGTTCTATTTTCGACTCCAGTTGCTGGGAGGCCTCAAGCAGGA
AGAGATCCGTCTCCGAGTCGTTGAGGAAGTCTGCCATTGGATCGGAGGCA
GCTACAGGGGAAAGCACTGGCTCTGGCGTAGCCTTCGTGCAGGTTAATCT
TGTGCGGGGAGCAACAGGTGACGGAGCTTTAGGAGTTTTTAGTGGCATTA
CTGGTTCGGACACAGCTATTTGCTCCAACTGGCTATTGAGCCTAGCACAG
CGCTCCTTAAGAAGAACATTAGCCCGCATCTGCTGTGCCCGCCACTGCTC
ATTGTCCAGTTGGCTGCGTCTATCCTCGACGCCCTTAAAGGCTATCTGCC
GGCGTCGTTCGCGCTGGCTCAAACTGCCTATTTCCGCGGAGTCGAAGCCA
CTGTCCGTGGTGGCATTGCTGCTTCGGTTCCAGCGCCAGCCCACCTCCGG
ACTTTCGGTGGCCAGTGTCTGGGA
BS04073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-PA | 1122 | CG6425-RA | 265..1122 | 874..17 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 2101 | CG6425-RA | 390..1249 | 874..15 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26716116..26716941 | 49..874 | 4130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:27:11 has no hits.
BS04073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:30 Download gff for
BS04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 266..1122 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:11 Download gff for
BS04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 266..1122 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:47:03 Download gff for
BS04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 391..1249 | 15..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:01:48 Download gff for
BS04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 391..1249 | 15..873 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:01:48 Download gff for
BS04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26716017..26716050 | 15..48 | 100 | <- | Plus |
3R | 26716116..26716940 | 49..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:47:03 Download gff for
BS04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22541739..22541772 | 15..48 | 100 | <- | Plus |
arm_3R | 22541838..22542662 | 49..873 | 100 | | Plus |
BS04073.5prime Sequence
793 bp (776 high quality bases) assembled on 2005-11-29
> BS04073.5prime
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCAC
BS04073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-PA | 1122 | CG6425-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 2101 | CG6425-RA | 126..902 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26716429..26717139 | 793..83 | 3555 | 100 | Minus |
3R | 32079331 | 3R | 26717198..26717264 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:14:11 has no hits.
BS04073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:31 Download gff for
BS04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:13 Download gff for
BS04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:32 Download gff for
BS04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 122..902 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:00 Download gff for
BS04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 122..902 | 10..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:00 Download gff for
BS04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26716429..26717138 | 84..793 | 100 | <- | Minus |
3R | 26717198..26717268 | 10..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:32 Download gff for
BS04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22542151..22542860 | 84..793 | 100 | <- | Minus |
arm_3R | 22542920..22542990 | 10..83 | 94 | | Minus |
BS04073.complete Sequence
1154 bp (1154 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634854
> BS04073.complete
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGG
CAAAGCGACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGC
GAGGACTGGCTAAACGCCCTAGAAGAGGCAGTGCAGCAGGCCACAATGCC
GAAGAAGCCGCGCACCTCGCTGCAGCGCTACAAATCAATGCCAACCACAG
GGGATTCGTGCAGCGGAGTGTCCACCCTGACCAATGTGACGGCCAATTCA
AATGCCTGCACAAGTGCCTCCTCCGCATCTGGTTCAGAGCTAAGGGATAC
TCCGCGCATCAAACGGCACGCCAGTTCGCACGCTCTGTCCCCAGCCACAT
CGCATGCGCGCGGCAAACTCTTTGGCAGCCGGAAATGAAAGCTTTCTAGA
CCAT
BS04073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 1122 | CG6425-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-RA | 2101 | CG6425-RA | 126..1249 | 17..1140 | 5620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26716116..26717139 | 1106..83 | 5120 | 100 | Minus |
3R | 32079331 | 3R | 26717198..26717264 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:43:18 has no hits.
BS04073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:24 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 1..1122 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:57 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 118..1245 | 10..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:24 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 126..1246 | 17..1137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:25 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 118..1245 | 10..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:17 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6425-RA | 126..1246 | 17..1137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:17 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26716020..26716050 | 1107..1137 | 100 | <- | Minus |
3R | 26716116..26717138 | 84..1106 | 100 | <- | Minus |
3R | 26717198..26717264 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:24 Download gff for
BS04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22541742..22541772 | 1107..1137 | 100 | <- | Minus |
arm_3R | 22541838..22542860 | 84..1106 | 100 | <- | Minus |
arm_3R | 22542920..22542986 | 17..83 | 100 | | Minus |
BS04073.pep Sequence
Translation from 16 to 1137
> BS04073.pep
MENALKRRSLTLSTRLLHKRHSASPQSVRTGHNVSVSVDTPGSPNSSAVV
GITSDLESTPPHKHKPSLDDSVDFSPRLDISLSPSCLFSQTLATESPEVG
WRWNRSSNATTDSGFDSAEIGSLSQRERRRQIAFKGVEDRRSQLDNEQWR
AQQMRANVLLKERCARLNSQLEQIAVSEPVMPLKTPKAPSPVAPRTRLTC
TKATPEPVLSPVAASDPMADFLNDSETDLFLLEASQQLESKIEHHEPPKS
STSTTPTRHHTAKRPSFYMKFLEDESEGEDWLNALEEAVQQATMPKKPRT
SLQRYKSMPTTGDSCSGVSTLTNVTANSNACTSASSASGSELRDTPRIKR
HASSHALSPATSHARGKLFGSRK*
BS04073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6425-PA | 373 | CG6425-PA | 1..373 | 1..373 | 1914 | 100 | Plus |