Clone BS04073 Report

Search the DGRC for BS04073

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6425-RA
Protein status:BS04073.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04073.3prime Sequence

874 bp (836 high quality bases) assembled on 2005-12-01

> BS04073.3prime
ATGGTCTAGAAAGCTTTCATTTCCGGCTGCCAAAGAGTTTGCCGCGCGCA
TGCGATGTGGCTGGGGACAGAGCGTGCGAACTGGCGTGCCGTTTGATGCG
CGGAGTATCCCTTAGCTCTGAACCAGATGCGGAGGAGGCACTTGTGCAGG
CATTTGAATTGGCCGTCACATTGGTCAGGGTGGACACTCCGCTGCACGAA
TCCCCTGTGGTTGGCATTGATTTGTAGCGCTGCAGCGAGGTGCGCGGCTT
CTTCGGCATTGTGGCCTGCTGCACTGCCTCTTCTAGGGCGTTTAGCCAGT
CCTCGCCCTCGCTTTCGTCTTCCAGAAATTTCATGTAGAAGGAGGGTCGC
TTTGCCGTGTGGTGCCTAGTGGGTGTGGTGCTTGTGCTTGATTTGGGAGG
TTCATGGTGTTCTATTTTCGACTCCAGTTGCTGGGAGGCCTCAAGCAGGA
AGAGATCCGTCTCCGAGTCGTTGAGGAAGTCTGCCATTGGATCGGAGGCA
GCTACAGGGGAAAGCACTGGCTCTGGCGTAGCCTTCGTGCAGGTTAATCT
TGTGCGGGGAGCAACAGGTGACGGAGCTTTAGGAGTTTTTAGTGGCATTA
CTGGTTCGGACACAGCTATTTGCTCCAACTGGCTATTGAGCCTAGCACAG
CGCTCCTTAAGAAGAACATTAGCCCGCATCTGCTGTGCCCGCCACTGCTC
ATTGTCCAGTTGGCTGCGTCTATCCTCGACGCCCTTAAAGGCTATCTGCC
GGCGTCGTTCGCGCTGGCTCAAACTGCCTATTTCCGCGGAGTCGAAGCCA
CTGTCCGTGGTGGCATTGCTGCTTCGGTTCCAGCGCCAGCCCACCTCCGG
ACTTTCGGTGGCCAGTGTCTGGGA

BS04073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 1122 CG6425-RA 265..1122 874..17 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2101 CG6425-RA 390..1249 874..15 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716116..26716941 49..874 4130 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:27:11 has no hits.

BS04073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:30 Download gff for BS04073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 266..1122 17..873 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:11 Download gff for BS04073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 266..1122 17..873 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:47:03 Download gff for BS04073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 391..1249 15..873 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:01:48 Download gff for BS04073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 391..1249 15..873 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:01:48 Download gff for BS04073.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26716017..26716050 15..48 100 <- Plus
3R 26716116..26716940 49..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:47:03 Download gff for BS04073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22541739..22541772 15..48 100 <- Plus
arm_3R 22541838..22542662 49..873 100   Plus

BS04073.5prime Sequence

793 bp (776 high quality bases) assembled on 2005-11-29

> BS04073.5prime
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCAC

BS04073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 1122 CG6425-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2101 CG6425-RA 126..902 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716429..26717139 793..83 3555 100 Minus
3R 32079331 3R 26717198..26717264 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:14:11 has no hits.

BS04073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:31 Download gff for BS04073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:13 Download gff for BS04073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:32 Download gff for BS04073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 122..902 10..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:00 Download gff for BS04073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 122..902 10..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:00 Download gff for BS04073.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26716429..26717138 84..793 100 <- Minus
3R 26717198..26717268 10..83 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:32 Download gff for BS04073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22542151..22542860 84..793 100 <- Minus
arm_3R 22542920..22542990 10..83 94   Minus

BS04073.complete Sequence

1154 bp (1154 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634854

> BS04073.complete
GAAGTTATCAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGC
TCAGCACGCGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTA
CGCACAGGGCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAA
CTCCTCAGCAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCAC
ACAAACACAAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTG
GACATCAGCCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGA
AAGTCCGGAGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGG
ACAGTGGCTTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGA
CGCCGGCAGATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGA
CAATGAGCAGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGG
AGCGCTGTGCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAA
CCAGTAATGCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCG
CACAAGATTAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTG
TAGCTGCCTCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGAT
CTCTTCCTGCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCA
TGAACCTCCCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGG
CAAAGCGACCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGC
GAGGACTGGCTAAACGCCCTAGAAGAGGCAGTGCAGCAGGCCACAATGCC
GAAGAAGCCGCGCACCTCGCTGCAGCGCTACAAATCAATGCCAACCACAG
GGGATTCGTGCAGCGGAGTGTCCACCCTGACCAATGTGACGGCCAATTCA
AATGCCTGCACAAGTGCCTCCTCCGCATCTGGTTCAGAGCTAAGGGATAC
TCCGCGCATCAAACGGCACGCCAGTTCGCACGCTCTGTCCCCAGCCACAT
CGCATGCGCGCGGCAAACTCTTTGGCAGCCGGAAATGAAAGCTTTCTAGA
CCAT

BS04073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 1122 CG6425-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-RA 2101 CG6425-RA 126..1249 17..1140 5620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26716116..26717139 1106..83 5120 100 Minus
3R 32079331 3R 26717198..26717264 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:43:18 has no hits.

BS04073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:24 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:57 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 118..1245 10..1140 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:24 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 126..1246 17..1137 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:25 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 118..1245 10..1140 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:17 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6425-RA 126..1246 17..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:17 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26716020..26716050 1107..1137 100 <- Minus
3R 26716116..26717138 84..1106 100 <- Minus
3R 26717198..26717264 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:24 Download gff for BS04073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22541742..22541772 1107..1137 100 <- Minus
arm_3R 22541838..22542860 84..1106 100 <- Minus
arm_3R 22542920..22542986 17..83 100   Minus

BS04073.pep Sequence

Translation from 16 to 1137

> BS04073.pep
MENALKRRSLTLSTRLLHKRHSASPQSVRTGHNVSVSVDTPGSPNSSAVV
GITSDLESTPPHKHKPSLDDSVDFSPRLDISLSPSCLFSQTLATESPEVG
WRWNRSSNATTDSGFDSAEIGSLSQRERRRQIAFKGVEDRRSQLDNEQWR
AQQMRANVLLKERCARLNSQLEQIAVSEPVMPLKTPKAPSPVAPRTRLTC
TKATPEPVLSPVAASDPMADFLNDSETDLFLLEASQQLESKIEHHEPPKS
STSTTPTRHHTAKRPSFYMKFLEDESEGEDWLNALEEAVQQATMPKKPRT
SLQRYKSMPTTGDSCSGVSTLTNVTANSNACTSASSASGSELRDTPRIKR
HASSHALSPATSHARGKLFGSRK*

BS04073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6425-PA 373 CG6425-PA 1..373 1..373 1914 100 Plus