Clone BS04074 Report

Search the DGRC for BS04074

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptbond-RA
Protein status:BS04074.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04074.3prime Sequence

867 bp (846 high quality bases) assembled on 2005-12-01

> BS04074.3prime
ATGGTCTAGAAAGCTTTCATTCCAGCTTCATGGGCTTCACGCTGTTGTTG
TTCAGATCGATGTACGCCTTTCCGACCTGGCCATTCTGGAGCAGATGCTT
ACCGGCGTTCATGGTCTGCGGCATGCAACCCATACCGCCGGCGGCACGCA
GAGCGGATTGAGCCAAACTACTGCCGGTGGTGCGACTGCCTCCATCCACG
GACTTGGCCTTCTTGTAGGTCTTGCGATAGAAATTGCCGAACAGGTAAAG
GAAGATGACCGTGTTGCCCACGAAGAAGAAGGTCAGTGTCTTGGGCATGT
TGCAGCCCTTGGCGCCCACGGTCAGCATGTAGCCCAGGATGAGGACGAAC
TGGATCAGCTGGATGCTGGTCATGTACTTCTTCCACCACAGGTACTTCTG
GTACTGGGGTCCCATTGCGGCCACCATGTAGTAGAAGTACATGATAATGT
GCACGCCCGAGTTGAGAATGCCAATGATCACGCCCTGCTCGCCGGGAGCG
TACTTCAGGTAGCCCCAGGAGAAGAGCACCGTGATGGTGTGATGGTACAC
GTGTAGGAAGGACACCTGGTTGTCCTTCTTGCGCAGCACAAAGAACGTCG
TGTCCAGCAGATCGATGATCTTCGAGAAAAAGTAGAACCAGGCACCGGAA
TAGAGGGTCAGATTCTGCTCCCTGGTGCGGTTAATCTCGCACTTCTTCGA
GAAGATCGACGCCATCACATTGCTCTCTTGGATGGACGTGCGGCACATCC
AAATGGAGTACAAGACCTGAAAGGCATTATAGAACACCATGATGCGCTTG
AGGTCCATGGGCTTGCGATTCTTCATGTACTCGGGTCCGATTTTCAGAAC
AAACGCCAGATAGACGA

BS04074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6921-PB 969 CG6921-RB 119..969 867..17 4255 100 Minus
CG6921-PA 969 CG6921-RA 119..969 867..17 4255 100 Minus
CG6921-PC 969 CG6921-RC 119..969 867..17 4255 100 Minus
CG33110-PA 1014 CG33110-RA 645..687 443..401 140 93 Minus
CG2781-PA 990 CG2781-RA 586..612 400..374 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 282..1132 867..17 4255 100 Minus
bond-RA 1627 CG6921-RA 406..1256 867..17 4255 100 Minus
bond-RB 1605 CG6921-RB 384..1234 867..17 4255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22556123 737..17 3605 100 Minus
3R 32079331 3R 22554883..22555013 867..737 655 100 Minus
3R 32079331 3R 22559621..22559876 367..622 365 76.2 Plus
3R 32079331 3R 7982833..7982946 342..455 315 85.1 Plus
3R 32079331 3R 4467636..4467744 360..468 290 84.4 Plus
3R 32079331 3R 22574801..22574887 454..368 255 86.2 Minus
3R 32079331 3R 4444123..4444211 367..455 220 83.1 Plus
3R 32079331 3R 9813350..9813433 622..539 195 82.1 Minus
3R 32079331 3R 22532980..22533064 367..451 185 81.2 Plus
Blast to na_te.dros performed on 2015-02-02 19:30:05 has no hits.

BS04074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:32 Download gff for BS04074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PB 120..969 17..866 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:14 Download gff for BS04074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PC 120..969 17..866 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:18:35 Download gff for BS04074.3prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 385..1234 17..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:59:53 Download gff for BS04074.3prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 385..1234 17..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:59:53 Download gff for BS04074.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22555404..22556123 17..736 100   Minus
3R 22554884..22555013 737..866 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:18:35 Download gff for BS04074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380606..18380735 737..866 100 -> Minus
arm_3R 18381126..18381845 17..736 100   Minus

BS04074.5prime Sequence

809 bp (796 high quality bases) assembled on 2005-11-29

> BS04074.5prime
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCCGTGGAT

BS04074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6921-PB 969 CG6921-RB 1..786 17..802 3930 100 Plus
CG6921-PA 969 CG6921-RA 1..786 17..802 3930 100 Plus
CG6921-PC 969 CG6921-RC 1..786 17..802 3930 100 Plus
CG33110-PA 1014 CG33110-RA 645..687 559..601 140 93 Plus
CG2781-PA 990 CG2781-RA 586..612 602..628 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 164..955 17..809 3940 99.9 Plus
bond-RA 1627 CG6921-RA 288..1079 17..809 3940 99.9 Plus
bond-RB 1605 CG6921-RB 266..1057 17..809 3940 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22555940 265..802 2690 100 Plus
3R 32079331 3R 22554822..22555013 74..265 960 100 Plus
3R 32079331 3R 22559621..22559876 635..380 365 76.2 Minus
3R 32079331 3R 7982833..7982946 660..547 315 85.1 Minus
3R 32079331 3R 4467636..4467744 642..534 290 84.4 Minus
3R 32079331 3R 22554700..22554757 17..74 290 100 Plus
3R 32079331 3R 22574801..22574887 548..634 255 86.2 Plus
3R 32079331 3R 4444123..4444211 635..547 220 83.1 Minus
3R 32079331 3R 9813350..9813433 380..463 195 82.1 Plus
3R 32079331 3R 22532980..22533064 635..551 185 81.2 Minus
Blast to na_te.dros performed on 2015-02-02 12:13:35 has no hits.

BS04074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:33 Download gff for BS04074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PB 1..792 17..809 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:16 Download gff for BS04074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PC 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:25 Download gff for BS04074.5prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 259..1057 10..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:56 Download gff for BS04074.5prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 259..1057 10..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:56 Download gff for BS04074.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22554693..22554757 10..74 95 -> Plus
3R 22554823..22555013 75..265 100 -> Plus
3R 22555404..22555946 266..809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:25 Download gff for BS04074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380415..18380479 10..74 95 -> Plus
arm_3R 18380545..18380735 75..265 100 -> Plus
arm_3R 18381126..18381668 266..809 99   Plus

BS04074.complete Sequence

1001 bp (1001 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634855

> BS04074.complete
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCGTGGATGGAGGCAGTCGCACCACCGGCAGTAGTTTGGCTCAATCCGCT
CTGCGTGCCGCCGGCGGTATGGGTTGCATGCCGCAGACCATGAACGCCGG
TAAGCATCTGCTCCAGAATGGCCAGGTCGGAAAGGCGTACATCGATCTGA
ACAACAACAGCGTGAAGCCCATGAAGCTGGAATGAAAGCTTTCTAGACCA
T

BS04074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 969 CG6921-PC 1..969 17..985 4845 100 Plus
bond-RA 969 CG6921-PA 1..969 17..985 4845 100 Plus
bond-RB 969 CG6921-PB 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 164..1132 17..985 4845 100 Plus
bond-RA 1627 CG6921-RA 288..1256 17..985 4845 100 Plus
bond-RB 1605 CG6921-RB 266..1234 17..985 4845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22556123 265..985 3605 100 Plus
3R 32079331 3R 22554822..22555013 74..265 960 100 Plus
3R 32079331 3R 22559621..22559876 635..380 365 76.2 Minus
3R 32079331 3R 7982833..7982946 660..547 315 85.1 Minus
3R 32079331 3R 4467636..4467744 642..534 290 84.4 Minus
3R 32079331 3R 22554700..22554757 17..74 290 100 Plus
3R 32079331 3R 22574801..22574887 548..634 255 86.2 Plus
3R 32079331 3R 4444123..4444211 635..547 220 83.1 Minus
3R 32079331 3R 9813350..9813433 380..463 195 82.1 Plus
3R 32079331 3R 22532980..22533064 635..551 185 81.2 Minus
Blast to na_te.dros performed on 2014-11-27 01:50:51 has no hits.

BS04074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:26 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
CG6921-RC 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:59 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
CG6921-RC 157..1132 10..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:19 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
bond-RB 266..1233 17..984 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:26 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
CG6921-RC 157..1132 10..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:55 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
bond-RB 266..1233 17..984 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:55 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22554700..22554757 17..74 100 -> Plus
3R 22554823..22555013 75..265 100 -> Plus
3R 22555404..22556122 266..984 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:19 Download gff for BS04074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380422..18380479 17..74 100 -> Plus
arm_3R 18380545..18380735 75..265 100 -> Plus
arm_3R 18381126..18381844 266..984 100   Plus

BS04074.pep Sequence

Translation from 16 to 984

> BS04074.pep
MTNYIKIVEERISGLSKGVDETVDSWFLMSSPMPVVAVVLVYLAFVLKIG
PEYMKNRKPMDLKRIMVFYNAFQVLYSIWMCRTSIQESNVMASIFSKKCE
INRTREQNLTLYSGAWFYFFSKIIDLLDTTFFVLRKKDNQVSFLHVYHHT
ITVLFSWGYLKYAPGEQGVIIGILNSGVHIIMYFYYMVAAMGPQYQKYLW
WKKYMTSIQLIQFVLILGYMLTVGAKGCNMPKTLTFFFVGNTVIFLYLFG
NFYRKTYKKAKSVDGGSRTTGSSLAQSALRAAGGMGCMPQTMNAGKHLLQ
NGQVGKAYIDLNNNSVKPMKLE*

BS04074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
bond-PC 322 CG6921-PC 1..322 1..322 1689 100 Plus
bond-PA 322 CG6921-PA 1..322 1..322 1689 100 Plus
bond-PB 322 CG6921-PB 1..322 1..322 1689 100 Plus
CG5278-PA 295 CG5278-PA 21..261 20..262 576 45.2 Plus
CG31522-PF 365 CG31522-PF 3..297 7..294 561 37.8 Plus