Clone Sequence Records
BS04074.3prime Sequence
867 bp (846 high quality bases) assembled on 2005-12-01
> BS04074.3prime
ATGGTCTAGAAAGCTTTCATTCCAGCTTCATGGGCTTCACGCTGTTGTTG
TTCAGATCGATGTACGCCTTTCCGACCTGGCCATTCTGGAGCAGATGCTT
ACCGGCGTTCATGGTCTGCGGCATGCAACCCATACCGCCGGCGGCACGCA
GAGCGGATTGAGCCAAACTACTGCCGGTGGTGCGACTGCCTCCATCCACG
GACTTGGCCTTCTTGTAGGTCTTGCGATAGAAATTGCCGAACAGGTAAAG
GAAGATGACCGTGTTGCCCACGAAGAAGAAGGTCAGTGTCTTGGGCATGT
TGCAGCCCTTGGCGCCCACGGTCAGCATGTAGCCCAGGATGAGGACGAAC
TGGATCAGCTGGATGCTGGTCATGTACTTCTTCCACCACAGGTACTTCTG
GTACTGGGGTCCCATTGCGGCCACCATGTAGTAGAAGTACATGATAATGT
GCACGCCCGAGTTGAGAATGCCAATGATCACGCCCTGCTCGCCGGGAGCG
TACTTCAGGTAGCCCCAGGAGAAGAGCACCGTGATGGTGTGATGGTACAC
GTGTAGGAAGGACACCTGGTTGTCCTTCTTGCGCAGCACAAAGAACGTCG
TGTCCAGCAGATCGATGATCTTCGAGAAAAAGTAGAACCAGGCACCGGAA
TAGAGGGTCAGATTCTGCTCCCTGGTGCGGTTAATCTCGCACTTCTTCGA
GAAGATCGACGCCATCACATTGCTCTCTTGGATGGACGTGCGGCACATCC
AAATGGAGTACAAGACCTGAAAGGCATTATAGAACACCATGATGCGCTTG
AGGTCCATGGGCTTGCGATTCTTCATGTACTCGGGTCCGATTTTCAGAAC
AAACGCCAGATAGACGA
BS04074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6921-PB | 969 | CG6921-RB | 119..969 | 867..17 | 4255 | 100 | Minus |
CG6921-PA | 969 | CG6921-RA | 119..969 | 867..17 | 4255 | 100 | Minus |
CG6921-PC | 969 | CG6921-RC | 119..969 | 867..17 | 4255 | 100 | Minus |
CG33110-PA | 1014 | CG33110-RA | 645..687 | 443..401 | 140 | 93 | Minus |
CG2781-PA | 990 | CG2781-RA | 586..612 | 400..374 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 282..1132 | 867..17 | 4255 | 100 | Minus |
bond-RA | 1627 | CG6921-RA | 406..1256 | 867..17 | 4255 | 100 | Minus |
bond-RB | 1605 | CG6921-RB | 384..1234 | 867..17 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22556123 | 737..17 | 3605 | 100 | Minus |
3R | 32079331 | 3R | 22554883..22555013 | 867..737 | 655 | 100 | Minus |
3R | 32079331 | 3R | 22559621..22559876 | 367..622 | 365 | 76.2 | Plus |
3R | 32079331 | 3R | 7982833..7982946 | 342..455 | 315 | 85.1 | Plus |
3R | 32079331 | 3R | 4467636..4467744 | 360..468 | 290 | 84.4 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 454..368 | 255 | 86.2 | Minus |
3R | 32079331 | 3R | 4444123..4444211 | 367..455 | 220 | 83.1 | Plus |
3R | 32079331 | 3R | 9813350..9813433 | 622..539 | 195 | 82.1 | Minus |
3R | 32079331 | 3R | 22532980..22533064 | 367..451 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:30:05 has no hits.
BS04074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:32 Download gff for
BS04074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PB | 120..969 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:14 Download gff for
BS04074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PC | 120..969 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:18:35 Download gff for
BS04074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 385..1234 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:59:53 Download gff for
BS04074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 385..1234 | 17..866 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:59:53 Download gff for
BS04074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22555404..22556123 | 17..736 | 100 | | Minus |
3R | 22554884..22555013 | 737..866 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:18:35 Download gff for
BS04074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380606..18380735 | 737..866 | 100 | -> | Minus |
arm_3R | 18381126..18381845 | 17..736 | 100 | | Minus |
BS04074.5prime Sequence
809 bp (796 high quality bases) assembled on 2005-11-29
> BS04074.5prime
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCCGTGGAT
BS04074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6921-PB | 969 | CG6921-RB | 1..786 | 17..802 | 3930 | 100 | Plus |
CG6921-PA | 969 | CG6921-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG6921-PC | 969 | CG6921-RC | 1..786 | 17..802 | 3930 | 100 | Plus |
CG33110-PA | 1014 | CG33110-RA | 645..687 | 559..601 | 140 | 93 | Plus |
CG2781-PA | 990 | CG2781-RA | 586..612 | 602..628 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 164..955 | 17..809 | 3940 | 99.9 | Plus |
bond-RA | 1627 | CG6921-RA | 288..1079 | 17..809 | 3940 | 99.9 | Plus |
bond-RB | 1605 | CG6921-RB | 266..1057 | 17..809 | 3940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22555940 | 265..802 | 2690 | 100 | Plus |
3R | 32079331 | 3R | 22554822..22555013 | 74..265 | 960 | 100 | Plus |
3R | 32079331 | 3R | 22559621..22559876 | 635..380 | 365 | 76.2 | Minus |
3R | 32079331 | 3R | 7982833..7982946 | 660..547 | 315 | 85.1 | Minus |
3R | 32079331 | 3R | 4467636..4467744 | 642..534 | 290 | 84.4 | Minus |
3R | 32079331 | 3R | 22554700..22554757 | 17..74 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 548..634 | 255 | 86.2 | Plus |
3R | 32079331 | 3R | 4444123..4444211 | 635..547 | 220 | 83.1 | Minus |
3R | 32079331 | 3R | 9813350..9813433 | 380..463 | 195 | 82.1 | Plus |
3R | 32079331 | 3R | 22532980..22533064 | 635..551 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:13:35 has no hits.
BS04074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:33 Download gff for
BS04074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PB | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:16 Download gff for
BS04074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PC | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:25 Download gff for
BS04074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 259..1057 | 10..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:56 Download gff for
BS04074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 259..1057 | 10..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:56 Download gff for
BS04074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554693..22554757 | 10..74 | 95 | -> | Plus |
3R | 22554823..22555013 | 75..265 | 100 | -> | Plus |
3R | 22555404..22555946 | 266..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:25 Download gff for
BS04074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380415..18380479 | 10..74 | 95 | -> | Plus |
arm_3R | 18380545..18380735 | 75..265 | 100 | -> | Plus |
arm_3R | 18381126..18381668 | 266..809 | 99 | | Plus |
BS04074.complete Sequence
1001 bp (1001 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634855
> BS04074.complete
GAAGTTATCAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAA
TCTCCGGCCTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTA
ATGAGCTCACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTT
TGTTCTGAAAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACC
TCAAGCGCATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATT
TGGATGTGCCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTT
CTCGAAGAAGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCT
ATTCCGGTGCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGAC
ACGACGTTCTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACA
CGTGTACCATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGT
ACGCTCCCGGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTG
CACATTATCATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTA
CCAGAAGTACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCC
AGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGC
AACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTT
CCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGT
CCGTGGATGGAGGCAGTCGCACCACCGGCAGTAGTTTGGCTCAATCCGCT
CTGCGTGCCGCCGGCGGTATGGGTTGCATGCCGCAGACCATGAACGCCGG
TAAGCATCTGCTCCAGAATGGCCAGGTCGGAAAGGCGTACATCGATCTGA
ACAACAACAGCGTGAAGCCCATGAAGCTGGAATGAAAGCTTTCTAGACCA
T
BS04074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 969 | CG6921-PC | 1..969 | 17..985 | 4845 | 100 | Plus |
bond-RA | 969 | CG6921-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
bond-RB | 969 | CG6921-PB | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 164..1132 | 17..985 | 4845 | 100 | Plus |
bond-RA | 1627 | CG6921-RA | 288..1256 | 17..985 | 4845 | 100 | Plus |
bond-RB | 1605 | CG6921-RB | 266..1234 | 17..985 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22556123 | 265..985 | 3605 | 100 | Plus |
3R | 32079331 | 3R | 22554822..22555013 | 74..265 | 960 | 100 | Plus |
3R | 32079331 | 3R | 22559621..22559876 | 635..380 | 365 | 76.2 | Minus |
3R | 32079331 | 3R | 7982833..7982946 | 660..547 | 315 | 85.1 | Minus |
3R | 32079331 | 3R | 4467636..4467744 | 642..534 | 290 | 84.4 | Minus |
3R | 32079331 | 3R | 22554700..22554757 | 17..74 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 548..634 | 255 | 86.2 | Plus |
3R | 32079331 | 3R | 4444123..4444211 | 635..547 | 220 | 83.1 | Minus |
3R | 32079331 | 3R | 9813350..9813433 | 380..463 | 195 | 82.1 | Plus |
3R | 32079331 | 3R | 22532980..22533064 | 635..551 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:50:51 has no hits.
BS04074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:26 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-RC | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:59 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-RC | 157..1132 | 10..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:19 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 266..1233 | 17..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:26 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-RC | 157..1132 | 10..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:55 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 266..1233 | 17..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:55 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554700..22554757 | 17..74 | 100 | -> | Plus |
3R | 22554823..22555013 | 75..265 | 100 | -> | Plus |
3R | 22555404..22556122 | 266..984 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:19 Download gff for
BS04074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380422..18380479 | 17..74 | 100 | -> | Plus |
arm_3R | 18380545..18380735 | 75..265 | 100 | -> | Plus |
arm_3R | 18381126..18381844 | 266..984 | 100 | | Plus |
BS04074.pep Sequence
Translation from 16 to 984
> BS04074.pep
MTNYIKIVEERISGLSKGVDETVDSWFLMSSPMPVVAVVLVYLAFVLKIG
PEYMKNRKPMDLKRIMVFYNAFQVLYSIWMCRTSIQESNVMASIFSKKCE
INRTREQNLTLYSGAWFYFFSKIIDLLDTTFFVLRKKDNQVSFLHVYHHT
ITVLFSWGYLKYAPGEQGVIIGILNSGVHIIMYFYYMVAAMGPQYQKYLW
WKKYMTSIQLIQFVLILGYMLTVGAKGCNMPKTLTFFFVGNTVIFLYLFG
NFYRKTYKKAKSVDGGSRTTGSSLAQSALRAAGGMGCMPQTMNAGKHLLQ
NGQVGKAYIDLNNNSVKPMKLE*
BS04074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-PC | 322 | CG6921-PC | 1..322 | 1..322 | 1689 | 100 | Plus |
bond-PA | 322 | CG6921-PA | 1..322 | 1..322 | 1689 | 100 | Plus |
bond-PB | 322 | CG6921-PB | 1..322 | 1..322 | 1689 | 100 | Plus |
CG5278-PA | 295 | CG5278-PA | 21..261 | 20..262 | 576 | 45.2 | Plus |
CG31522-PF | 365 | CG31522-PF | 3..297 | 7..294 | 561 | 37.8 | Plus |