Clone Sequence Records
BS04076.3prime Sequence
855 bp (827 high quality bases) assembled on 2005-12-01
> BS04076.3prime
ATGGTCTAGAAAGCTTTTATTTAAGACTATTTGAAGATGTAGGTAAGTTA
ATTTCGGCAGTAATTGAGTCGGACGATTTTTTCATTTTCTCGCAATAATC
ATTAAAAATATCTCGAAAGCGAATCCAACATTTCTCTGGAATAGTTATCG
AAGTCCGGAAGTTATTTTTCACTTCGCTTATCCGCATGTACACTCCTCGA
TTATTTTGTCCGATATCAAAATAAAAATTTTTATTATCCACCTTCATGTG
TCGCTCTTCCGGTAAATCTCCTTTAAACCCTCCATCATTAGCTCCAAACT
CTTCTAACAAATCTGTAAGAGCGTCACGAAACTCGATCATGCCTTGAGCC
GGTAAAGCGATTTGAGATCTAGGCCCCCCTCTTGTTATTGTTTGCGATAC
CCGTAAAAATCGGCCACGCGCATTTTCTTTTAAGTCCAAGTAATACCTTC
TGTAATCTTTTATCATCATTTCAGATTTAAGTTTACCATCTTCCGGCAAA
TTGTCGGTGTTTGGTGGACCTAGAGAAGCGTAGTAATCGCTAAATGAGGA
TAAATGGTCACGAAATTCGGCTGCAGTTGAAAGAGCCAAGTAAATTTGAC
TTCGTCTACCATCAGCGCCAATCTCAGCAACCTTTATAAAACGGCCTCTT
CTATTTTGTTTTACATCCAAATAAAATCGTTTAGATTGTATTTGCAACAT
TTTCGTAGCCAATTCCTGTTCGACGCCGCTTCCTCCTTTAGCAGAAGAAT
CGAAGTCGTTCCTACTTGAGGAACCCTCCATATTTGCAACATTATATTTT
GATCCTGAGATGCCATCATCTCCACTTCCCAAATCGGACATGTCGACTGA
TAACT
BS04076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1507-PA | 825 | Pur-alpha-RA | 1..825 | 841..17 | 4125 | 100 | Minus |
| CG1507-PC | 825 | Pur-alpha-RC | 1..825 | 841..17 | 4125 | 100 | Minus |
| CG1507-PB | 828 | Pur-alpha-RB | 1..563 | 841..279 | 2815 | 100 | Minus |
| CG1507-PD | 783 | Pur-alpha-RD | 22..518 | 775..279 | 2485 | 100 | Minus |
| CG1507-PB | 828 | Pur-alpha-RB | 566..828 | 279..17 | 1315 | 100 | Minus |
| CG1507-PD | 783 | Pur-alpha-RD | 521..783 | 279..17 | 1315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RE | 2719 | CG1507-RE | 394..1219 | 841..16 | 4130 | 100 | Minus |
| Pur-alpha-RC | 1238 | CG1507-RC | 239..1064 | 841..16 | 4130 | 100 | Minus |
| Pur-alpha-RA | 1313 | CG1507-RA | 314..1139 | 841..16 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 565601..565757 | 172..16 | 785 | 100 | Minus |
| 4 | 1348131 | 4 | 564540..564664 | 401..277 | 625 | 100 | Minus |
| 4 | 1348131 | 4 | 564359..564482 | 521..398 | 620 | 100 | Minus |
| 4 | 1348131 | 4 | 560469..560583 | 737..623 | 575 | 100 | Minus |
| 4 | 1348131 | 4 | 565409..565517 | 279..171 | 545 | 100 | Minus |
| 4 | 1348131 | 4 | 560716..560822 | 624..518 | 535 | 100 | Minus |
| 4 | 1348131 | 4 | 560349..560412 | 798..735 | 320 | 100 | Minus |
| 4 | 1348131 | 4 | 560258..560300 | 841..799 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:04:37 has no hits.
BS04076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:34 Download gff for
BS04076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1507-PC | 1..825 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:17 Download gff for
BS04076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1507-PC | 1..825 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:20:38 Download gff for
BS04076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 307..1139 | 16..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:55 Download gff for
BS04076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 307..1139 | 16..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:55 Download gff for
BS04076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 565601..565757 | 16..172 | 100 | | Minus |
| 4 | 560251..560300 | 799..850 | 92 | -> | Minus |
| 4 | 560349..560411 | 736..798 | 100 | -> | Minus |
| 4 | 560471..560583 | 623..735 | 100 | -> | Minus |
| 4 | 560718..560820 | 520..622 | 100 | -> | Minus |
| 4 | 564361..564479 | 401..519 | 100 | -> | Minus |
| 4 | 564541..564662 | 279..400 | 100 | -> | Minus |
| 4 | 565410..565515 | 173..278 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:20:38 Download gff for
BS04076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 580877..580926 | 799..850 | 92 | -> | Minus |
| arm_4 | 580975..581037 | 736..798 | 100 | -> | Minus |
| arm_4 | 581097..581209 | 623..735 | 100 | -> | Minus |
| arm_4 | 581344..581446 | 520..622 | 100 | -> | Minus |
| arm_4 | 584987..585105 | 401..519 | 100 | -> | Minus |
| arm_4 | 585167..585288 | 279..400 | 100 | -> | Minus |
| arm_4 | 586036..586141 | 173..278 | 100 | -> | Minus |
| arm_4 | 586227..586383 | 16..172 | 100 | | Minus |
BS04076.5prime Sequence
855 bp (719 high quality bases) assembled on 2005-11-29
> BS04076.5prime
GAAGTTATCAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCT
CAGGATCAAAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAAC
GACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGC
TACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAAC
AAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGT
AGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGA
CCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACA
CCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAA
GATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATT
TTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCG
CTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTG
TTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGA
AGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGAC
AAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTC
CGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATAT
TTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTG
CCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAATAAAAGCTTTCT
AGACC
BS04076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1507-PA | 825 | Pur-alpha-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG1507-PC | 825 | Pur-alpha-RC | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG1507-PB | 828 | Pur-alpha-RB | 1..563 | 17..579 | 2815 | 100 | Plus |
| CG1507-PD | 783 | Pur-alpha-RD | 22..518 | 83..579 | 2485 | 100 | Plus |
| CG1507-PB | 828 | Pur-alpha-RB | 566..828 | 579..841 | 1315 | 100 | Plus |
| CG1507-PD | 783 | Pur-alpha-RD | 521..783 | 579..841 | 1315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RE | 2719 | CG1507-RE | 394..1219 | 17..842 | 4130 | 100 | Plus |
| Pur-alpha-RC | 1238 | CG1507-RC | 239..1064 | 17..842 | 4130 | 100 | Plus |
| Pur-alpha-RA | 1313 | CG1507-RA | 314..1139 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 565601..565757 | 686..842 | 785 | 100 | Plus |
| 4 | 1348131 | 4 | 564540..564664 | 457..581 | 625 | 100 | Plus |
| 4 | 1348131 | 4 | 564359..564482 | 337..460 | 620 | 100 | Plus |
| 4 | 1348131 | 4 | 560469..560583 | 121..235 | 575 | 100 | Plus |
| 4 | 1348131 | 4 | 565409..565517 | 579..687 | 545 | 100 | Plus |
| 4 | 1348131 | 4 | 560716..560822 | 234..340 | 535 | 100 | Plus |
| 4 | 1348131 | 4 | 560349..560412 | 60..123 | 320 | 100 | Plus |
| 4 | 1348131 | 4 | 560258..560300 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:15:39 has no hits.
BS04076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:35 Download gff for
BS04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1507-PC | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:19 Download gff for
BS04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1507-PC | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:04 Download gff for
BS04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 307..1139 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:14 Download gff for
BS04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 307..1139 | 8..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:14 Download gff for
BS04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 565601..565757 | 686..842 | 100 | | Plus |
| 4 | 560251..560300 | 8..59 | 92 | -> | Plus |
| 4 | 560349..560411 | 60..122 | 100 | -> | Plus |
| 4 | 560471..560583 | 123..235 | 100 | -> | Plus |
| 4 | 560718..560820 | 236..338 | 100 | -> | Plus |
| 4 | 564361..564479 | 339..457 | 100 | -> | Plus |
| 4 | 564541..564662 | 458..579 | 100 | -> | Plus |
| 4 | 565410..565515 | 580..685 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:04 Download gff for
BS04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 585167..585288 | 458..579 | 100 | -> | Plus |
| arm_4 | 580877..580926 | 8..59 | 92 | -> | Plus |
| arm_4 | 580975..581037 | 60..122 | 100 | -> | Plus |
| arm_4 | 581097..581209 | 123..235 | 100 | -> | Plus |
| arm_4 | 581344..581446 | 236..338 | 100 | -> | Plus |
| arm_4 | 584987..585105 | 339..457 | 100 | -> | Plus |
| arm_4 | 586036..586141 | 580..685 | 100 | -> | Plus |
| arm_4 | 586227..586383 | 686..842 | 100 | | Plus |
BS04076.complete Sequence
857 bp (857 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634856
> BS04076.complete
GAAGTTATCAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCT
CAGGATCAAAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAAC
GACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGC
TACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAAC
AAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGT
AGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGA
CCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACA
CCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAA
GATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATT
TTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCG
CTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTG
TTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGA
AGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGAC
AAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTC
CGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATAT
TTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTG
CCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAATAAAAGCTTTCT
AGACCAT
BS04076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RE | 825 | CG1507-PE | 1..825 | 17..841 | 4125 | 100 | Plus |
| Pur-alpha-RC | 825 | CG1507-PC | 1..825 | 17..841 | 4125 | 100 | Plus |
| Pur-alpha-RA | 825 | CG1507-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RE | 2719 | CG1507-RE | 394..1219 | 17..842 | 4130 | 100 | Plus |
| Pur-alpha-RC | 1238 | CG1507-RC | 239..1064 | 17..842 | 4130 | 100 | Plus |
| Pur-alpha-RA | 1313 | CG1507-RA | 314..1139 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 565601..565757 | 686..842 | 785 | 100 | Plus |
| 4 | 1348131 | 4 | 564540..564664 | 457..581 | 625 | 100 | Plus |
| 4 | 1348131 | 4 | 564359..564482 | 337..460 | 620 | 100 | Plus |
| 4 | 1348131 | 4 | 560469..560583 | 121..235 | 575 | 100 | Plus |
| 4 | 1348131 | 4 | 565409..565517 | 579..687 | 545 | 100 | Plus |
| 4 | 1348131 | 4 | 560716..560822 | 234..340 | 535 | 100 | Plus |
| 4 | 1348131 | 4 | 560349..560412 | 60..123 | 320 | 100 | Plus |
| 4 | 1348131 | 4 | 560258..560300 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:26 has no hits.
BS04076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:27 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RC | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:56 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RC | 298..1130 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:54 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 314..1136 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:27 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RC | 298..1130 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:56 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 314..1136 | 17..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:56 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 565601..565754 | 686..839 | 100 | | Plus |
| 4 | 560258..560300 | 17..59 | 100 | -> | Plus |
| 4 | 560349..560411 | 60..122 | 100 | -> | Plus |
| 4 | 560471..560583 | 123..235 | 100 | -> | Plus |
| 4 | 560718..560820 | 236..338 | 100 | -> | Plus |
| 4 | 564361..564479 | 339..457 | 100 | -> | Plus |
| 4 | 564541..564662 | 458..579 | 100 | -> | Plus |
| 4 | 565410..565515 | 580..685 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:54 Download gff for
BS04076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 586227..586380 | 686..839 | 100 | | Plus |
| arm_4 | 580884..580926 | 17..59 | 100 | -> | Plus |
| arm_4 | 580975..581037 | 60..122 | 100 | -> | Plus |
| arm_4 | 581097..581209 | 123..235 | 100 | -> | Plus |
| arm_4 | 581344..581446 | 236..338 | 100 | -> | Plus |
| arm_4 | 584987..585105 | 339..457 | 100 | -> | Plus |
| arm_4 | 585167..585288 | 458..579 | 100 | -> | Plus |
| arm_4 | 586036..586141 | 580..685 | 100 | -> | Plus |
BS04076.pep Sequence
Translation from 16 to 840
> BS04076.pep
MSDLGSGDDGISGSKYNVANMEGSSSRNDFDSSAKGGSGVEQELATKMLQ
IQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF
SDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ
TITRGGPRSQIALPAQGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMK
VDNKNFYFDIGQNNRGVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYC
EKMKKSSDSITAEINLPTSSNSLK*
BS04076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-PE | 274 | CG1507-PE | 1..274 | 1..274 | 1416 | 100 | Plus |
| Pur-alpha-PC | 274 | CG1507-PC | 1..274 | 1..274 | 1416 | 100 | Plus |
| Pur-alpha-PA | 274 | CG1507-PA | 1..274 | 1..274 | 1416 | 100 | Plus |
| Pur-alpha-PF | 275 | CG1507-PF | 1..275 | 1..274 | 1404 | 99.6 | Plus |
| Pur-alpha-PB | 275 | CG1507-PB | 1..275 | 1..274 | 1404 | 99.6 | Plus |
