Clone BS04077 Report

Search the DGRC for BS04077

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG3434-RA
Protein status:BS04077.pep: full length peptide match
Sequenced Size:1289

Clone Sequence Records

BS04077.3prime Sequence

801 bp (732 high quality bases) assembled on 2005-09-08

> BS04077.3prime
ATGGTCTAGAAAGCTTTCATACTGCTGCCGCAGCGAACCCTTTCCCCATA
GTGGCCTTGCTAATTACTTTGGTATTGGCTGCGATGGAATAATCCACCTG
TGTTTTCCCATTCTGATTTCTTACGAGCTCCGTCAGCTGTGGAAGCGTAT
CTTTAGCCACACTCTCACGAATTTTTTCAAAGAAAGCCATGTAGTGATAA
AGGTTGTGAACCATCAGTAAGATGGGACCTAATAGTTCGTTGGTCTTGTA
CAGGTGGTGAAGGTAGGCACGCGTGTGTTTCTGGCAAGTCAAGCAATTGC
AGTTGCTCAGCGGCGGAGTAAAATCCTCCTTGATAGCTTCGTCGGTTATG
TCCAAGAAAGGCACATGCTCCACTGCATCCTGCACAAAACTAAATGACAA
AGCCTTGAAGTTTAGAGAAGCACAATATGCGTAGGAAGTGTCAAACACAT
CGATTCCTTGTTGGATTAGTTCCAGAACGGTTAGGGGCGTGTATGCACCC
GGCAATATCTTAGGCTTGTCCTCCTCCAGCTGCTTGACGCAGTGCTCTAC
TATTGGCAGTAGTTTGGAAGTGTCCAAAGTGGTCGCTGATAGACCATTCG
CGTGGAAACCCTCGAAGATGTAACCTCCATAGCTTCCCGCTGGCTGTTCC
CGGGCATGTTTAATGGACTGCGTCCGAGCAAAGGTGTTGTATCCGCCCAC
AATGGGAGCTAGCAGAGTGGAATTCACCTTGCCCCGGTGCTCGTAGATGT
ATTGCATAAACTTCTTCTGTCCTGTCAACCGATTTCTGAACCCGCTTCTT
G

BS04077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-PA 1257 CG3434-RA 509..1257 765..17 3720 99.8 Minus
CG3434-PA 1257 CG3434-RA 474..509 801..766 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-RA 1372 CG3434-RA 556..1339 801..17 3885 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9459654..9460244 210..801 2910 99.8 Plus
3L 28110227 3L 9459402..9459594 17..209 950 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:31:46 has no hits.

BS04077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:36 Download gff for BS04077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-PA 474..1257 17..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:20 Download gff for BS04077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-PA 474..1257 17..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 20:02:02 Download gff for BS04077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 556..1339 17..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:00:11 Download gff for BS04077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 556..1339 17..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:00:11 Download gff for BS04077.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9459402..9459594 17..209 99 <- Plus
3L 9459654..9460244 210..801 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 20:02:02 Download gff for BS04077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9452502..9452694 17..209 99 <- Plus
arm_3L 9452754..9453344 210..801 99   Plus

BS04077.5prime Sequence

729 bp (635 high quality bases) assembled on 2005-09-08

> BS04077.5prime
CAGTCGACATGAAATTCGCAATCGAGAGTATTAGCAAGAATTCTGGTCGA
CTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAGACTCCCCT
TCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAGTGCGGATG
TTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAATTCACACTG
TCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAACAGTGGTGG
GGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCTAAATATTC
TCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTAACGACAGG
GATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTCTCTTCGGA
GCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTATGAGGGAC
TCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGGTTCAGAAA
TCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAGCACCGGGG
CAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATACAACACCT
TTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAGCGGGAAGC
TATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTATCAGCGAC
CACTTTGGACACTTCCAAACTACTGCCAA

BS04077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-PA 1257 CG3434-RA 1..721 9..729 3580 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-RA 1372 CG3434-RA 83..803 9..729 3590 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9459997..9460717 729..9 3590 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:56:16 has no hits.

BS04077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:38 Download gff for BS04077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-PA 1..719 9..727 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:21 Download gff for BS04077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-PA 1..719 9..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:25 Download gff for BS04077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 74..801 1..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:42 Download gff for BS04077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 74..801 1..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:42 Download gff for BS04077.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9459999..9460721 1..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:25 Download gff for BS04077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9453099..9453821 1..727 99   Minus

BS04077.complete Sequence

1289 bp assembled on 2008-08-14

GenBank Submission: FJ634857

> BS04077.complete
GAAGTTATCAGTCGACATGAAATTCGCAATCGAGAGTATTAGCAAGAATT
CTGGTCGACTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAG
ACTCCCCTTCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAG
TGCGGATGTTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAAT
TCACACTGTCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAAC
AGTGGTGGGGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCT
AAATATTCTCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTA
ACGACAGGGATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTC
TCTTCGGAGCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTA
TGAGGGACTCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGG
TTCAGAAATCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAG
CACCGGGGCAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATA
CAACACCTTTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAG
CGGGAAGCTATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTA
TCAGCGACCACTTTGGACACTTCCAAACTACTGCCAATAGTAGAGCACTG
CGTCAAGCAGCTGGAGGAGGACAAGCCTAAGATATTGCCGGGTGCATACA
CGCCCCTAACCGTTCTGGAACTAATCCAACAAGGAATCGATGTGTTTGAC
ACTTCCTACGCATATTGTGCTTCTCTAAACTTCAAGGCTTTGTCATTTAG
TTTTGTGCAGGATGCAGTGGAGCATGTGCCTTTCTTGGACATAACCGACG
AAGCTATCAAGGAGGATTTTACTCCGCCGCTGAGCAACTGCAATTGCTTG
ACTTGCCAGAAACACACGCGTGCCTACCTTCACCACCTGTACAAGACCAA
CGAACTATTAGGTCCCATCTTACTGATGGTTCACAACCTTTATCACTACA
TGGCTTTCTTTGAAAAAATTCGTGAGAGTGTGGCTAAAGATACGCTTCCA
CAGCTGACGGAGCTCGTAAGAAATCAGAATGGGAAAACACAGGTGGATTA
TTCCATCGCAGCCAATACCAAAGTAATTAGCAAGGCCACTATGGGGAAAG
GATTCGCTGCGGCAGCAGTATGAAAGCTTTCTAGACCAT

BS04077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-RA 1257 CG3434-PA 1..1257 17..1273 6270 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-RA 1372 CG3434-RA 83..1339 17..1273 6270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9459654..9460717 1080..17 5305 99.9 Minus
3L 28110227 3L 9459402..9459594 1273..1081 965 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:32:30 has no hits.

BS04077.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:57 Download gff for BS04077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 51..1314 10..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:02 Download gff for BS04077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 83..1338 17..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:57 Download gff for BS04077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 58..1313 17..1272 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:42 Download gff for BS04077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3434-RA 83..1338 17..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:42 Download gff for BS04077.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9459403..9459594 1081..1272 100 <- Minus
3L 9459654..9460717 17..1080 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:02 Download gff for BS04077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9452503..9452694 1081..1272 100 <- Minus
arm_3L 9452754..9453817 17..1080 99   Minus

BS04077.pep Sequence

Translation from 16 to 1272

> BS04077.pep
MKFAIESISKNSGRLGQLRIRDGGPEFKTPLLLQTTKGGSIPWLSADVFE
THVSRKPQVLQFTLSTMEQMTEALTHWNSGGGRGLSDYVGLPGHLNILLL
RDPCETTPSGGNDRDILPLFTRRGKESLSSERYMEIVASFKPDMYEGLCD
ADTNLESAKKRVQKSVDRTEKFMQYIYEHRGKVNSTLLAPIVGGYNTFAR
TQSIKHAREQPAGSYGGYIFEGFHANGLSATTLDTSKLLPIVEHCVKQLE
EDKPKILPGAYTPLTVLELIQQGIDVFDTSYAYCASLNFKALSFSFVQDA
VEHVPFLDITDEAIKEDFTPPLSNCNCLTCQKHTRAYLHHLYKTNELLGP
ILLMVHNLYHYMAFFEKIRESVAKDTLPQLTELVRNQNGKTQVDYSIAAN
TKVISKATMGKGFAAAAV*

BS04077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3434-PA 418 CG3434-PA 1..418 1..418 2180 100 Plus
Tgt-PA 427 CG4947-PA 132..364 128..379 202 26.5 Plus