Clone Sequence Records
BS04077.3prime Sequence
801 bp (732 high quality bases) assembled on 2005-09-08
> BS04077.3prime
ATGGTCTAGAAAGCTTTCATACTGCTGCCGCAGCGAACCCTTTCCCCATA
GTGGCCTTGCTAATTACTTTGGTATTGGCTGCGATGGAATAATCCACCTG
TGTTTTCCCATTCTGATTTCTTACGAGCTCCGTCAGCTGTGGAAGCGTAT
CTTTAGCCACACTCTCACGAATTTTTTCAAAGAAAGCCATGTAGTGATAA
AGGTTGTGAACCATCAGTAAGATGGGACCTAATAGTTCGTTGGTCTTGTA
CAGGTGGTGAAGGTAGGCACGCGTGTGTTTCTGGCAAGTCAAGCAATTGC
AGTTGCTCAGCGGCGGAGTAAAATCCTCCTTGATAGCTTCGTCGGTTATG
TCCAAGAAAGGCACATGCTCCACTGCATCCTGCACAAAACTAAATGACAA
AGCCTTGAAGTTTAGAGAAGCACAATATGCGTAGGAAGTGTCAAACACAT
CGATTCCTTGTTGGATTAGTTCCAGAACGGTTAGGGGCGTGTATGCACCC
GGCAATATCTTAGGCTTGTCCTCCTCCAGCTGCTTGACGCAGTGCTCTAC
TATTGGCAGTAGTTTGGAAGTGTCCAAAGTGGTCGCTGATAGACCATTCG
CGTGGAAACCCTCGAAGATGTAACCTCCATAGCTTCCCGCTGGCTGTTCC
CGGGCATGTTTAATGGACTGCGTCCGAGCAAAGGTGTTGTATCCGCCCAC
AATGGGAGCTAGCAGAGTGGAATTCACCTTGCCCCGGTGCTCGTAGATGT
ATTGCATAAACTTCTTCTGTCCTGTCAACCGATTTCTGAACCCGCTTCTT
G
BS04077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-PA | 1257 | CG3434-RA | 509..1257 | 765..17 | 3720 | 99.8 | Minus |
CG3434-PA | 1257 | CG3434-RA | 474..509 | 801..766 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-RA | 1372 | CG3434-RA | 556..1339 | 801..17 | 3885 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9459654..9460244 | 210..801 | 2910 | 99.8 | Plus |
3L | 28110227 | 3L | 9459402..9459594 | 17..209 | 950 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:31:46 has no hits.
BS04077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:36 Download gff for
BS04077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-PA | 474..1257 | 17..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:20 Download gff for
BS04077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-PA | 474..1257 | 17..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 20:02:02 Download gff for
BS04077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 556..1339 | 17..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:00:11 Download gff for
BS04077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 556..1339 | 17..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:00:11 Download gff for
BS04077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9459402..9459594 | 17..209 | 99 | <- | Plus |
3L | 9459654..9460244 | 210..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 20:02:02 Download gff for
BS04077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9452502..9452694 | 17..209 | 99 | <- | Plus |
arm_3L | 9452754..9453344 | 210..801 | 99 | | Plus |
BS04077.5prime Sequence
729 bp (635 high quality bases) assembled on 2005-09-08
> BS04077.5prime
CAGTCGACATGAAATTCGCAATCGAGAGTATTAGCAAGAATTCTGGTCGA
CTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAGACTCCCCT
TCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAGTGCGGATG
TTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAATTCACACTG
TCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAACAGTGGTGG
GGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCTAAATATTC
TCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTAACGACAGG
GATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTCTCTTCGGA
GCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTATGAGGGAC
TCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGGTTCAGAAA
TCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAGCACCGGGG
CAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATACAACACCT
TTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAGCGGGAAGC
TATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTATCAGCGAC
CACTTTGGACACTTCCAAACTACTGCCAA
BS04077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-PA | 1257 | CG3434-RA | 1..721 | 9..729 | 3580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-RA | 1372 | CG3434-RA | 83..803 | 9..729 | 3590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9459997..9460717 | 729..9 | 3590 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:56:16 has no hits.
BS04077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:38 Download gff for
BS04077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-PA | 1..719 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:21 Download gff for
BS04077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-PA | 1..719 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:25 Download gff for
BS04077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 74..801 | 1..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:42 Download gff for
BS04077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 74..801 | 1..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:42 Download gff for
BS04077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9459999..9460721 | 1..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:25 Download gff for
BS04077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9453099..9453821 | 1..727 | 99 | | Minus |
BS04077.complete Sequence
1289 bp assembled on 2008-08-14
GenBank Submission: FJ634857
> BS04077.complete
GAAGTTATCAGTCGACATGAAATTCGCAATCGAGAGTATTAGCAAGAATT
CTGGTCGACTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAG
ACTCCCCTTCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAG
TGCGGATGTTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAAT
TCACACTGTCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAAC
AGTGGTGGGGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCT
AAATATTCTCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTA
ACGACAGGGATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTC
TCTTCGGAGCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTA
TGAGGGACTCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGG
TTCAGAAATCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAG
CACCGGGGCAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATA
CAACACCTTTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAG
CGGGAAGCTATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTA
TCAGCGACCACTTTGGACACTTCCAAACTACTGCCAATAGTAGAGCACTG
CGTCAAGCAGCTGGAGGAGGACAAGCCTAAGATATTGCCGGGTGCATACA
CGCCCCTAACCGTTCTGGAACTAATCCAACAAGGAATCGATGTGTTTGAC
ACTTCCTACGCATATTGTGCTTCTCTAAACTTCAAGGCTTTGTCATTTAG
TTTTGTGCAGGATGCAGTGGAGCATGTGCCTTTCTTGGACATAACCGACG
AAGCTATCAAGGAGGATTTTACTCCGCCGCTGAGCAACTGCAATTGCTTG
ACTTGCCAGAAACACACGCGTGCCTACCTTCACCACCTGTACAAGACCAA
CGAACTATTAGGTCCCATCTTACTGATGGTTCACAACCTTTATCACTACA
TGGCTTTCTTTGAAAAAATTCGTGAGAGTGTGGCTAAAGATACGCTTCCA
CAGCTGACGGAGCTCGTAAGAAATCAGAATGGGAAAACACAGGTGGATTA
TTCCATCGCAGCCAATACCAAAGTAATTAGCAAGGCCACTATGGGGAAAG
GATTCGCTGCGGCAGCAGTATGAAAGCTTTCTAGACCAT
BS04077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-RA | 1257 | CG3434-PA | 1..1257 | 17..1273 | 6270 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-RA | 1372 | CG3434-RA | 83..1339 | 17..1273 | 6270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9459654..9460717 | 1080..17 | 5305 | 99.9 | Minus |
3L | 28110227 | 3L | 9459402..9459594 | 1273..1081 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:30 has no hits.
BS04077.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:57 Download gff for
BS04077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 51..1314 | 10..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:02 Download gff for
BS04077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 83..1338 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:57 Download gff for
BS04077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 58..1313 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:42 Download gff for
BS04077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3434-RA | 83..1338 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:42 Download gff for
BS04077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9459403..9459594 | 1081..1272 | 100 | <- | Minus |
3L | 9459654..9460717 | 17..1080 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:02 Download gff for
BS04077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9452503..9452694 | 1081..1272 | 100 | <- | Minus |
arm_3L | 9452754..9453817 | 17..1080 | 99 | | Minus |
BS04077.pep Sequence
Translation from 16 to 1272
> BS04077.pep
MKFAIESISKNSGRLGQLRIRDGGPEFKTPLLLQTTKGGSIPWLSADVFE
THVSRKPQVLQFTLSTMEQMTEALTHWNSGGGRGLSDYVGLPGHLNILLL
RDPCETTPSGGNDRDILPLFTRRGKESLSSERYMEIVASFKPDMYEGLCD
ADTNLESAKKRVQKSVDRTEKFMQYIYEHRGKVNSTLLAPIVGGYNTFAR
TQSIKHAREQPAGSYGGYIFEGFHANGLSATTLDTSKLLPIVEHCVKQLE
EDKPKILPGAYTPLTVLELIQQGIDVFDTSYAYCASLNFKALSFSFVQDA
VEHVPFLDITDEAIKEDFTPPLSNCNCLTCQKHTRAYLHHLYKTNELLGP
ILLMVHNLYHYMAFFEKIRESVAKDTLPQLTELVRNQNGKTQVDYSIAAN
TKVISKATMGKGFAAAAV*
BS04077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3434-PA | 418 | CG3434-PA | 1..418 | 1..418 | 2180 | 100 | Plus |
Tgt-PA | 427 | CG4947-PA | 132..364 | 128..379 | 202 | 26.5 | Plus |