Clone BS04083 Report

Search the DGRC for BS04083

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG3732-RA
Protein status:BS04083.pep: full length peptide match
Sequenced Size:881

Clone Sequence Records

BS04083.3prime Sequence

846 bp (771 high quality bases) assembled on 2005-09-08

> BS04083.3prime
ATGGTCTAGAAAGCTTCTAACGTCTGCCCGACGCCGAGGTTTTCCGCCTG
CCGCCGCTGCTGGAGCTACTCGAGCTGCTCGACGAAGAGTCGCTGGAGCT
GGACGAACTGGACGACGACGAGGAGGACACGGAAGAGGTAGAGTCGCGTG
AGGTACGCTTGCGCTCCTTGTCGCCATTGCCAGTGCCCTCTTTGCTCTTG
ACATCCGTGGAAGTGACTTCTTCGTCGCCCCAGAGATCGTACTTTGATAG
ATCCTCGTCGTCTCCCTCGTCGTCGTCCTCATCTTCTTCCTCATCATTCC
GCTGCTCATCTCGGCTAGACCTTCTGGGCCTCTTTGAGTCCTCTCTATGC
TCGCCGTGCTTTCGCTTCTTGCGACGACCGAACTCATCGTACTCGCTATC
CGAATCCTGACGATCCTTGTACTCTACCACGCCGCGATCATTGTATCCAC
CGCCAAAGCCAGTCCGCTCCTCCACATCCGAGAACTTAGGAGCGTTGCAC
ATATTGCAGGTTTGGCGACGGGCCCAGTTCACATTCGCGCATTTGCTGCA
CTGCCAGTCCTCGGCGCTGAACAAGCCCCGCGACTTGTCGGCCGCCGCCT
TGCCGATCTCGGTGCCCAGCTTTTTCTTGCTTGAGCTGCTGCTACTGCTG
CTGCTCCCGTTGCCGCGTTCCCGCTCCCGGTCTCGATCCCTGTCGCGCTC
CGGCTTATCACTGCCATCCCGGTCCCGGTCGCATTTGTTGCACTGCAAAC
GGCGGGCGAAGTTCAGATGGCGACAGTCGTATTCTGGGCAAATCCAATTC
GCCAGGCGAAGCGACGCCGCTGCTTCCCGCGGCCCCTGATGCCCCG

BS04083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 849 CG3732-RA 68..849 798..17 3810 99.4 Minus
CG3732-PA 849 CG3732-RA 24..68 843..799 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1262 CG3732-RA 206..1031 843..17 4050 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22639038..22639481 17..460 2190 99.5 Plus
2R 25286936 2R 22639536..22639853 459..776 1575 99.7 Plus
2R 25286936 2R 22639931..22639996 777..843 270 97 Plus
Blast to na_te.dros performed 2015-02-12 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 729..600 143 59.2 Minus
roo 9092 roo DM_ROO 9092bp 1059..1145 681..591 129 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 741..625 127 59 Minus

BS04083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:43 Download gff for BS04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 21..849 17..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:29 Download gff for BS04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 21..849 17..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 05:08:41 Download gff for BS04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 203..1035 13..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:26 Download gff for BS04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 203..1035 13..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:26 Download gff for BS04083.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22639537..22639853 460..776 99 <- Plus
2R 22639931..22639999 777..846 95   Plus
2R 22639034..22639480 13..459 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 05:08:41 Download gff for BS04083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18526539..18526985 13..459 99 <- Plus
arm_2R 18527042..18527358 460..776 99 <- Plus
arm_2R 18527436..18527504 777..846 95   Plus

BS04083.5prime Sequence

700 bp (568 high quality bases) assembled on 2005-09-08

> BS04083.5prime
CAGTCGACATGTCCCCTTCAAATGGAGGCGTGGCATCAGGGGCCGCGGGA
AGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGATTACGACTG
TCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATGCGACCGGG
ACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAGACCGGGAG
CGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCAAGCAAGAA
AAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTCGCGGGGCT
TGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATGTGAACTGG
GCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTCTCGGATGT
GGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGGCGTGGTAG
AGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGTTCGGTCGT
CGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAGAGGCCCAG
AAGGTCTAGCCGAGATGAGCACCGGAATGATGAGGAAGAAGATGAGGACG
ACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCTGGGGCGAC
GAAGAAGTCACTTCCACGGGATGTCAAAAGCAAAGAGGGAACTGGCAATG

BS04083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 849 CG3732-RA 9..661 17..669 3240 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1262 CG3732-RA 180..873 6..700 3375 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22639536..22639853 415..98 1590 100 Minus
2R 25286936 2R 22639196..22639481 700..414 1340 98.6 Minus
2R 25286936 2R 22639931..22640022 97..6 430 97.8 Minus
Blast to na_te.dros performed 2015-02-10 22:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 133..249 136 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 145..274 134 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 193..283 129 66.3 Plus

BS04083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:44 Download gff for BS04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 1..691 9..700 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:31 Download gff for BS04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-PA 1..691 9..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:30 Download gff for BS04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 176..873 1..700 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:51 Download gff for BS04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 176..873 1..700 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:51 Download gff for BS04083.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22639196..22639480 415..700 98 <- Minus
2R 22639537..22639853 98..414 100 <- Minus
2R 22639931..22640024 1..97 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:30 Download gff for BS04083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18526701..18526985 415..700 98 <- Minus
arm_2R 18527042..18527358 98..414 100 <- Minus
arm_2R 18527436..18527529 1..97 94   Minus

BS04083.complete Sequence

881 bp assembled on 2009-08-24

GenBank Submission: KX796542

> BS04083.complete
GAAGTTATCAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGG
CCGCGGGAAGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGAT
TACGACTGTCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATG
CGACCGGGACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAG
ACCGGGAGCGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCA
AGCAAGAAAAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTC
GCGGGGCTTGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATG
TGAACTGGGCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTC
TCGGATGTGGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGG
CGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGT
TCGGTCGTCGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAG
AGGCCCAGAAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGA
TGAGGACGACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCT
GGGGCGACGAAGAAGTCACTTCCACGGATGTCAAGAGCAAAGAGGGCACT
GGCAATGGCGACAAGGAGCGCAAGCGTACCTCACGCGACTCTACCTCTTC
CGTGTCCTCCTCGTCGTCGTCCAGTTCGTCCAGCTCCAGCGACTCTTCGT
CGAGCAGCTCGAGTAGCTCCAGCAGCGGCGGCAGGCGGAAAACCTCCTCG
TCGGGCAGACGTTAGAAGCTTTCTAGACCAT

BS04083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 849 CG3732-PA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-RA 1262 CG3732-RA 180..1031 14..865 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22639038..22639481 865..422 2220 100 Minus
2R 25286936 2R 22639536..22639853 423..106 1590 100 Minus
2R 25286936 2R 22639931..22640022 105..14 460 100 Minus
Blast to na_te.dros performed 2014-11-28 01:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6861 141..257 136 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2405 153..282 134 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 201..291 129 66.3 Plus

BS04083.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:31 Download gff for BS04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 145..993 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:04 Download gff for BS04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 183..1031 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:37 Download gff for BS04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3732-RA 183..1031 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:37 Download gff for BS04083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22639038..22639480 423..865 100 <- Minus
2R 22639537..22639853 106..422 100 <- Minus
2R 22639931..22640019 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:04 Download gff for BS04083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18526543..18526985 423..865 100 <- Minus
arm_2R 18527042..18527358 106..422 100 <- Minus
arm_2R 18527436..18527524 17..105 100   Minus

BS04083.pep Sequence

Translation from 16 to 864

> BS04083.pep
MSSSNGGVASGAAGSSGVASPGDWICPDYDCRHLNFARRLQCNKCDRDRD
GSDKPERDRDRDRERERGNGSSSSSSSSSKKKLGTEIGKAAADKSRGLFS
AEDWQCSKCANVNWARRQTCNMCNAPKFSDVEERTGFGGGYNDRGVVEYK
DRQDSDSEYDEFGRRKKRKHGEHREDSKRPRRSSRDEQRNDEEEDEDDDE
GDDEDLSKYDLWGDEEVTSTDVKSKEGTGNGDKERKRTSRDSTSSVSSSS
SSSSSSSSDSSSSSSSSSSSGGRRKTSSSGRR*

BS04083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3732-PA 282 CG3732-PA 1..282 1..282 1484 100 Plus
PNUTS-PA 628 CG33526-PA 281..411 148..279 156 34.1 Plus
PNUTS-PB 628 CG33526-PB 281..411 148..279 156 34.1 Plus
PNUTS-PE 1135 CG33526-PE 281..411 148..279 156 34.1 Plus
PNUTS-PD 1135 CG33526-PD 281..411 148..279 156 34.1 Plus