Clone Sequence Records
BS04083.3prime Sequence
846 bp (771 high quality bases) assembled on 2005-09-08
> BS04083.3prime
ATGGTCTAGAAAGCTTCTAACGTCTGCCCGACGCCGAGGTTTTCCGCCTG
CCGCCGCTGCTGGAGCTACTCGAGCTGCTCGACGAAGAGTCGCTGGAGCT
GGACGAACTGGACGACGACGAGGAGGACACGGAAGAGGTAGAGTCGCGTG
AGGTACGCTTGCGCTCCTTGTCGCCATTGCCAGTGCCCTCTTTGCTCTTG
ACATCCGTGGAAGTGACTTCTTCGTCGCCCCAGAGATCGTACTTTGATAG
ATCCTCGTCGTCTCCCTCGTCGTCGTCCTCATCTTCTTCCTCATCATTCC
GCTGCTCATCTCGGCTAGACCTTCTGGGCCTCTTTGAGTCCTCTCTATGC
TCGCCGTGCTTTCGCTTCTTGCGACGACCGAACTCATCGTACTCGCTATC
CGAATCCTGACGATCCTTGTACTCTACCACGCCGCGATCATTGTATCCAC
CGCCAAAGCCAGTCCGCTCCTCCACATCCGAGAACTTAGGAGCGTTGCAC
ATATTGCAGGTTTGGCGACGGGCCCAGTTCACATTCGCGCATTTGCTGCA
CTGCCAGTCCTCGGCGCTGAACAAGCCCCGCGACTTGTCGGCCGCCGCCT
TGCCGATCTCGGTGCCCAGCTTTTTCTTGCTTGAGCTGCTGCTACTGCTG
CTGCTCCCGTTGCCGCGTTCCCGCTCCCGGTCTCGATCCCTGTCGCGCTC
CGGCTTATCACTGCCATCCCGGTCCCGGTCGCATTTGTTGCACTGCAAAC
GGCGGGCGAAGTTCAGATGGCGACAGTCGTATTCTGGGCAAATCCAATTC
GCCAGGCGAAGCGACGCCGCTGCTTCCCGCGGCCCCTGATGCCCCG
BS04083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-PA | 849 | CG3732-RA | 68..849 | 798..17 | 3810 | 99.4 | Minus |
CG3732-PA | 849 | CG3732-RA | 24..68 | 843..799 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 1262 | CG3732-RA | 206..1031 | 843..17 | 4050 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22639038..22639481 | 17..460 | 2190 | 99.5 | Plus |
2R | 25286936 | 2R | 22639536..22639853 | 459..776 | 1575 | 99.7 | Plus |
2R | 25286936 | 2R | 22639931..22639996 | 777..843 | 270 | 97 | Plus |
Blast to na_te.dros performed 2015-02-12 18:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 729..600 | 143 | 59.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 681..591 | 129 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 741..625 | 127 | 59 | Minus |
BS04083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:43 Download gff for
BS04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 21..849 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:29 Download gff for
BS04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 21..849 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 05:08:41 Download gff for
BS04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 203..1035 | 13..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:26 Download gff for
BS04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 203..1035 | 13..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:26 Download gff for
BS04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22639537..22639853 | 460..776 | 99 | <- | Plus |
2R | 22639931..22639999 | 777..846 | 95 | | Plus |
2R | 22639034..22639480 | 13..459 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 05:08:41 Download gff for
BS04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18526539..18526985 | 13..459 | 99 | <- | Plus |
arm_2R | 18527042..18527358 | 460..776 | 99 | <- | Plus |
arm_2R | 18527436..18527504 | 777..846 | 95 | | Plus |
BS04083.5prime Sequence
700 bp (568 high quality bases) assembled on 2005-09-08
> BS04083.5prime
CAGTCGACATGTCCCCTTCAAATGGAGGCGTGGCATCAGGGGCCGCGGGA
AGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGATTACGACTG
TCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATGCGACCGGG
ACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAGACCGGGAG
CGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCAAGCAAGAA
AAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTCGCGGGGCT
TGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATGTGAACTGG
GCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTCTCGGATGT
GGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGGCGTGGTAG
AGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGTTCGGTCGT
CGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAGAGGCCCAG
AAGGTCTAGCCGAGATGAGCACCGGAATGATGAGGAAGAAGATGAGGACG
ACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCTGGGGCGAC
GAAGAAGTCACTTCCACGGGATGTCAAAAGCAAAGAGGGAACTGGCAATG
BS04083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-PA | 849 | CG3732-RA | 9..661 | 17..669 | 3240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 1262 | CG3732-RA | 180..873 | 6..700 | 3375 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22639536..22639853 | 415..98 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 22639196..22639481 | 700..414 | 1340 | 98.6 | Minus |
2R | 25286936 | 2R | 22639931..22640022 | 97..6 | 430 | 97.8 | Minus |
Blast to na_te.dros performed 2015-02-10 22:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 133..249 | 136 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 145..274 | 134 | 58.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 193..283 | 129 | 66.3 | Plus |
BS04083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:44 Download gff for
BS04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 1..691 | 9..700 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:31 Download gff for
BS04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-PA | 1..691 | 9..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:30 Download gff for
BS04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 176..873 | 1..700 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:51 Download gff for
BS04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 176..873 | 1..700 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:51 Download gff for
BS04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22639196..22639480 | 415..700 | 98 | <- | Minus |
2R | 22639537..22639853 | 98..414 | 100 | <- | Minus |
2R | 22639931..22640024 | 1..97 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:30 Download gff for
BS04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18526701..18526985 | 415..700 | 98 | <- | Minus |
arm_2R | 18527042..18527358 | 98..414 | 100 | <- | Minus |
arm_2R | 18527436..18527529 | 1..97 | 94 | | Minus |
BS04083.complete Sequence
881 bp assembled on 2009-08-24
GenBank Submission: KX796542
> BS04083.complete
GAAGTTATCAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGG
CCGCGGGAAGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGAT
TACGACTGTCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATG
CGACCGGGACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAG
ACCGGGAGCGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCA
AGCAAGAAAAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTC
GCGGGGCTTGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATG
TGAACTGGGCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTC
TCGGATGTGGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGG
CGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGT
TCGGTCGTCGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAG
AGGCCCAGAAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGA
TGAGGACGACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCT
GGGGCGACGAAGAAGTCACTTCCACGGATGTCAAGAGCAAAGAGGGCACT
GGCAATGGCGACAAGGAGCGCAAGCGTACCTCACGCGACTCTACCTCTTC
CGTGTCCTCCTCGTCGTCGTCCAGTTCGTCCAGCTCCAGCGACTCTTCGT
CGAGCAGCTCGAGTAGCTCCAGCAGCGGCGGCAGGCGGAAAACCTCCTCG
TCGGGCAGACGTTAGAAGCTTTCTAGACCAT
BS04083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 849 | CG3732-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-RA | 1262 | CG3732-RA | 180..1031 | 14..865 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22639038..22639481 | 865..422 | 2220 | 100 | Minus |
2R | 25286936 | 2R | 22639536..22639853 | 423..106 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 22639931..22640022 | 105..14 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 141..257 | 136 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 153..282 | 134 | 58.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 201..291 | 129 | 66.3 | Plus |
BS04083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:31 Download gff for
BS04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 145..993 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:04 Download gff for
BS04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 183..1031 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:37 Download gff for
BS04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3732-RA | 183..1031 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:37 Download gff for
BS04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22639038..22639480 | 423..865 | 100 | <- | Minus |
2R | 22639537..22639853 | 106..422 | 100 | <- | Minus |
2R | 22639931..22640019 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:04 Download gff for
BS04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18526543..18526985 | 423..865 | 100 | <- | Minus |
arm_2R | 18527042..18527358 | 106..422 | 100 | <- | Minus |
arm_2R | 18527436..18527524 | 17..105 | 100 | | Minus |
BS04083.pep Sequence
Translation from 16 to 864
> BS04083.pep
MSSSNGGVASGAAGSSGVASPGDWICPDYDCRHLNFARRLQCNKCDRDRD
GSDKPERDRDRDRERERGNGSSSSSSSSSKKKLGTEIGKAAADKSRGLFS
AEDWQCSKCANVNWARRQTCNMCNAPKFSDVEERTGFGGGYNDRGVVEYK
DRQDSDSEYDEFGRRKKRKHGEHREDSKRPRRSSRDEQRNDEEEDEDDDE
GDDEDLSKYDLWGDEEVTSTDVKSKEGTGNGDKERKRTSRDSTSSVSSSS
SSSSSSSSDSSSSSSSSSSSGGRRKTSSSGRR*
BS04083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3732-PA | 282 | CG3732-PA | 1..282 | 1..282 | 1484 | 100 | Plus |
PNUTS-PA | 628 | CG33526-PA | 281..411 | 148..279 | 156 | 34.1 | Plus |
PNUTS-PB | 628 | CG33526-PB | 281..411 | 148..279 | 156 | 34.1 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 281..411 | 148..279 | 156 | 34.1 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 281..411 | 148..279 | 156 | 34.1 | Plus |