Clone Sequence Records
BS04084.3prime Sequence
938 bp (789 high quality bases) assembled on 2005-12-01
> BS04084.3prime
ATGGTCTAGAAAGCTTTCATAGATCATCATCGCCGATGCCCTCGAACGCA
CCGTTGGCCACGCGTGCTCCATTGTCCACCACGTCGTTGCGGAAGAATAC
GGCTCCGAAGGTGCGCGATGTAGTCAACCTGGGTTTGGATCTGGGCGCCG
AATCTTCGGACAGAAACCTAACTGGCGGCGTTGTGGGCGCAGTGGATGTA
GAACACGTGGAGGATGCCCATGTCGACGTGGAACAGGTTGAGCTGGGTGT
TGATGAGGACGACGTGACTGCATTCTGTTCCTGCTCCTCATCGCTATTCT
GATCCTTTCCACTGCCAGCGCCTCGCTGTAACAACTCGTCGACCATGGCC
TGCAGGCACACGGACATCAGCATGGCCTGATCACTGTTAATAGTGATCCA
GCGCAGCGTCTGCTTGCCAATCAGATATTCAAAGGCCAGCTGGAGATGCG
TGGGTTCCAGCCGCGATTCCAGCGTAATGTGTGTAACGCTGACGCGCCAC
GAGCGCATCCTAGTCACCCGGAACTTCGTCTCGTAGATCTTAACGCCACG
TGCCGTGCGCAGAGCCAACTCCTTGTTGCCAATGCTAATTAACGCCATTG
TGTCCGGCTCCGGATAGTCCACCTGCGCCTCATCGAACTGCAGGCAGCCG
TAGGAGGGCAGCTGACGCACCAGGTCCATGTACTCACGCGCTCTTCCCTG
CATCTGCAGGCTGTTCAGTTGGCGACCCTCGCCGGGCGTACAGATGACCA
CCCACTCGCGGTTCACGTCCGCAACGGTCTGGTTGTAGAGCAAATTCAAT
GCCACTTTGCTTCCAGTTAGCTTGGCATCTCTACTGGAGTCCCAGTAGCA
GGTACGCAGCAGCAGTTCGCAGGGCTGTACATGCAGACGCGTTATATACG
GCGACTCGAAATCCATGAAGCGTCGCACCAGGTGCAGT
BS04084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-PA | 1473 | CG5734-RA | 552..1473 | 938..17 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-RA | 2205 | CG5734-RA | 672..1593 | 938..17 | 4595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10205369..10206290 | 17..938 | 4595 | 99.9 | Plus |
Blast to na_te.dros performed 2015-01-31 14:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 1789..1835 | 627..673 | 109 | 70.2 | Plus |
BS04084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:45 Download gff for
BS04084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-PA | 552..1473 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:32 Download gff for
BS04084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-PA | 552..1473 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:16 Download gff for
BS04084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 672..1601 | 7..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:31 Download gff for
BS04084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 672..1601 | 7..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:31 Download gff for
BS04084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10205361..10206290 | 7..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:16 Download gff for
BS04084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10205361..10206290 | 7..938 | 99 | | Plus |
BS04084.5prime Sequence
865 bp (810 high quality bases) assembled on 2005-11-29
> BS04084.5prime
GAAGTTATCAGTCGACATGCACAGCAGCAGGATGCACTTTTCCATACCGG
ACACCCAGGAGCTGGGCTCCTCGCCCACCTACACGGCCTACAACATACAC
ATCAACGGCATCCACCACTGCGTCCTGCGCTACAAACAGCTGCACTCGCT
GAACGACCAGCTGCGCAGGCACTGTGTGGGCGTCCCCCTGCCGCCCTTTC
CACCCAAACGCCTCCTACCGCTCACCAATGGCCAACTGGAGGCGCGTCGC
AGCTCCCTGGAGCAGTACCTGCAGGCGGTGGGTCAGGACAACCGTCTGGC
CCGATCCGCCCACTTGCAGCAGTTCTTGCAGCGCGCCCAACTGGACACGG
CACTGGCCGAGGGCCAAGTCGCCACCGATTGCGAGGAACAGCAGCTGGAG
GTGCAGGTCTATACGAATCCCGCGGGCGAACGCATCCTGGTCAACTGCTC
GGTGCAGCAGAACGCCAGTGCGCTGCTCAAGAGCGTCTGCCGGGAGTTAC
AGCTGCCCGATGAGCTGGTGCGCTTCTTTTGCCTGTTCCTAGTGCGACGT
CAAAGGAAATCCGGCGAACTGCACCTGGTGCGACGCCTCATGGATTTCGA
GTCGCCGTATATAACGCGTCTGCATGTACAGCCCTGCGAACTGCTGCTGC
GTACCTGCTACTGGGACTCCAGTAGAGATGCCAAGCTAACTGGAAGCAAA
GTGGCATTGAATTTGCTCTACAACCAGACCGTTGCGGACGTGAACCGCGA
GTGGGTGGTCATCTGTACGCCCGGCGAGGGTCGCCAACTGAACAGCCTGC
AGATGCAGGGAAGAGCGCGTGAGTACATGGACCTGGTGCGTCAGCTGCCC
TCCTACGGCTGCCTG
BS04084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-PA | 1473 | CG5734-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-RA | 2205 | CG5734-RA | 121..969 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10205993..10206841 | 865..17 | 4245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:13:21 has no hits.
BS04084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:47 Download gff for
BS04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:33 Download gff for
BS04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:23 Download gff for
BS04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 121..969 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:56 Download gff for
BS04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 121..969 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:56 Download gff for
BS04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10205993..10206841 | 17..865 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:23 Download gff for
BS04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10205993..10206841 | 17..865 | 100 | | Minus |
BS04084.complete Sequence
1505 bp (1505 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634858
> BS04084.complete
GAAGTTATCAGTCGACATGCACAGCAGCAGGATGCACTTTTCCATACCGG
ACACCCAGGAGCTGGGCTCCTCGCCCACCTACACGGCCTACAACATACAC
ATCAACGGCATCCACCACTGCGTCCTGCGCTACAAACAGCTGCACTCGCT
GAACGACCAGCTGCGCAGGCACTGTGTGGGCGTCCCCCTGCCGCCCTTTC
CACCCAAACGCCTCCTACCGCTCACCAATGGCCAACTGGAGGCGCGTCGC
AGCTCCCTGGAGCAGTACCTGCAGGCGGTGGGTCAGGACAACCGTCTGGC
CCGATCCGCCCACTTGCAGCAGTTCTTGCAGCGCGCCCAACTGGACACGG
CACTGGCCGAGGGCCAAGTCGCCACCGATTGCGAGGAACAGCAGCTGGAG
GTGCAGGTCTATACGAATCCCGCGGGCGAACGCATCCTGGTCAACTGCTC
GGTGCAGCAGAACGCCAGTGCGCTGCTCAAGAGCGTCTGCCGGGAGTTAC
AGCTGCCCGATGAGCTGGTGCGCTTCTTTTGCCTGTTCCTAGTGCGACGT
CAAAGGAAATCCGGCGAACTGCACCTGGTGCGACGCCTCATGGATTTCGA
GTCGCCGTATATAACGCGTCTGCATGTACAGCCCTGCGAACTGCTGCTGC
GTACCTGCTACTGGGACTCCAGTAGAGATGCCAAGCTAACTGGAAGCAAA
GTGGCATTGAATTTGCTCTACAACCAGACCGTTGCGGACGTGAACCGCGA
GTGGGTGGTCATCTGTACGCCCGGCGAGGGTCGCCAACTGAACAGCCTGC
AGATGCAGGGAAGAGCGCGTGAGTACATGGACCTGGTGCGTCAGCTGCCC
TCCTACGGCTGCCTGCAGTTCGATGAGGCGCAGGTGGACTATCCGGAGCC
GGACACAATGGCGTTAATTAGCATTGGCAACAAGGAGTTGGCTCTGCGCA
CGGCACGTGGCGTTAAGATCTACGAGACGAAGTTCCGGGTGACTAGGATG
CGCTCGTGGCGCGTCAGCGTTACACACATTACGCTGGAATCGCGGCTGGA
ACCCACGCATCTCCAGCTGGCCTTTGAATATCTGATTGGCAAGCAGACGC
TGCGCTGGATCACTATTAACAGTGATCAGGCCATGCTGATGTCCGTGTGC
CTGCAGGCCATGGTCGACGAGTTGTTACAGCGAGGCGCTGGCAGTGGAAA
GGATCAGAATAGCGATGAGGAGCAGGAACAGAATGCAGTCACGTCGTCCT
CATCAACACCCAGCTCAACCTGTTCCACGTCGACATGGGCATCCTCCACG
TGTTCTACATCCACTGCGCCCACAACGCCGCCAGTTAGGTTTCTGTCCGA
AGATTCGGCGCCCAGATCCAAACCCAGGTTGACTACATCGCGCACCTTCG
GAGCCGTATTCTTCCGCAACGACGTGGTGGACAATGGAGCACGCGTGGCC
AACGGTGCGTTCGAGGGCATCGGCGATGATGATCTATGAAAGCTTTCTAG
ACCAT
BS04084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-RA | 1473 | CG5734-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-RA | 2205 | CG5734-RA | 121..1593 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10205369..10206841 | 1489..17 | 7365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:52:02 has no hits.
BS04084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:28 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 1..1473 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:01 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 121..1601 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:00 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 121..1592 | 17..1488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:28 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 121..1601 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:30 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5734-RA | 121..1592 | 17..1488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:30 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10205370..10206841 | 17..1488 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:00 Download gff for
BS04084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10205370..10206841 | 17..1488 | 100 | | Minus |
BS04084.pep Sequence
Translation from 16 to 1488
> BS04084.pep
MHSSRMHFSIPDTQELGSSPTYTAYNIHINGIHHCVLRYKQLHSLNDQLR
RHCVGVPLPPFPPKRLLPLTNGQLEARRSSLEQYLQAVGQDNRLARSAHL
QQFLQRAQLDTALAEGQVATDCEEQQLEVQVYTNPAGERILVNCSVQQNA
SALLKSVCRELQLPDELVRFFCLFLVRRQRKSGELHLVRRLMDFESPYIT
RLHVQPCELLLRTCYWDSSRDAKLTGSKVALNLLYNQTVADVNREWVVIC
TPGEGRQLNSLQMQGRAREYMDLVRQLPSYGCLQFDEAQVDYPEPDTMAL
ISIGNKELALRTARGVKIYETKFRVTRMRSWRVSVTHITLESRLEPTHLQ
LAFEYLIGKQTLRWITINSDQAMLMSVCLQAMVDELLQRGAGSGKDQNSD
EEQEQNAVTSSSSTPSSTCSTSTWASSTCSTSTAPTTPPVRFLSEDSAPR
SKPRLTTSRTFGAVFFRNDVVDNGARVANGAFEGIGDDDL*
BS04084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5734-PA | 490 | CG5734-PA | 1..490 | 1..490 | 2541 | 100 | Plus |
| CG32758-PD | 430 | CG32758-PD | 70..422 | 9..385 | 219 | 23.9 | Plus |
| CG32758-PC | 443 | CG32758-PC | 83..435 | 9..385 | 219 | 23.9 | Plus |
| CG32758-PA | 531 | CG32758-PA | 171..523 | 9..385 | 219 | 23.9 | Plus |
