Clone BS04085 Report

Search the DGRC for BS04085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptPih1D1-RA
Protein status:BS04085.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04085.3prime Sequence

932 bp (791 high quality bases) assembled on 2005-12-01

> BS04085.3prime
ATGGTCTAGAAAGCTTTTAGTTACTGAACACTGGAATGCGAACATGAAGC
ATCTTGGTGGTCTTATCGAACAGAGCTTGTGCACGATCCTGCTGCAGACG
GTAGTTGACGAATTTGTTGAACACATAGCCATACTTGCGGGTTTCCACCA
CGATACGATCCTCGCCGACAAGGAGACTGAACTCCTGCGAAGAAACGTAG
TTGGGCAAGTAGATCTCAGCATGGATTTCGTCAACGGACTCGTCACGAAC
TCGACCACGAAGTTTGTACTGTATATCCAGAAAACCGCCGCCTGCAGACT
GTCGACTCTTCCTTATGGCAGCAGCATCCTTCTCGTCGATCTCCTGCACC
AGTTTTCCGGAATTTTCCGGTGCCACAGCCCCACCATCCCGGCTGTTAAG
AGCAGCAGGAATGCCGGACGTAGACTGGGCCCTTTTCATATCTTCGTTGC
GCACACGATGAGTGACCAAAGTGCCGATGAACTTGCGATTGTTCAGAATA
ATGGTCTTTTCCATGTTGAGCTGCACATTATACTTTTCGCTCATCGCCTC
AATCACAATTTGCATAAAGAAGTTCTTGAAGAGCTGCGACTTCTGGATCT
TTACCAGAAACTTTGGGTTGATAGCGATGTCGCAGACATCGACGGTCTTA
TCGGAACGATCCTTCGTGAATCTGGGATCTGAGATGCTCATGGGCACTCG
ATAGGAGCCAGGAGTAGTGGATTCCAGTATGCCAATCAGTTCCTCCTCGG
TGACATCCTGCGGTGCTGGAACTTCCGCTGCCTGGCACACGTTAATGAAG
AACTTTTCATCACTGTTTGTCTTGAAGCTTTTCACGCAGATTCCTGCGGT
CGGCTGGACAATCAGCGAGTCTCGCGGCGGCGGTTTCTGCTGCGGGCCGC
TGCCCTCCGGATCGGCGCCTCCAAAGTACTGG

BS04085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5792-PA 1008 CG5792-RA 93..1008 932..17 4580 100 Minus
CG5792-PB 4005 CG5792-RB 3179..4005 843..17 4135 100 Minus
CG5792-PB 4005 CG5792-RB 93..181 932..844 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-RA 1194 CG5792-RA 215..1132 932..15 4590 100 Minus
Pih1D1-RD 3498 CG5792-RD 215..303 932..844 445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12713648..12714298 195..845 3255 100 Plus
2L 23513712 2L 12713443..12713586 53..196 720 100 Plus
2L 23513712 2L 12721450..12721539 843..932 450 100 Plus
2L 23513712 2L 12713338..12713377 15..54 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:44:11 has no hits.

BS04085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:48 Download gff for BS04085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5792-PA 93..1008 17..932 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:35 Download gff for BS04085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5792-PA 93..1008 17..932 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:29:12 Download gff for BS04085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 215..1132 15..932 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:28 Download gff for BS04085.3prime
Subject Subject Range Query Range Percent Splice Strand
Pih1D1-RA 215..1132 15..932 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:28 Download gff for BS04085.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12721451..12721539 844..932 100   Plus
2L 12713338..12713375 15..52 100 <- Plus
2L 12713443..12713586 53..196 100 <- Plus
2L 12713650..12714296 197..843 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:29:12 Download gff for BS04085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12713338..12713375 15..52 100 <- Plus
arm_2L 12713443..12713586 53..196 100 <- Plus
arm_2L 12713650..12714296 197..843 100 <- Plus
arm_2L 12721451..12721539 844..932 100   Plus

BS04085.5prime Sequence

815 bp (767 high quality bases) assembled on 2005-11-29

> BS04085.5prime
GAAGTTATCAGTCGACATGTCGCGTCGTTCCAATTTCATTGAGGGCAACG
ACAATTTTCGCGACCAGAACCTGCGCTTTGTGCGGAACGAGTTTGAGGAC
AATATTAACCAGTACTTTGGAGGCGCCGATCCGGAGGGCAGCGGCCCGCA
GCAGAAACCGCCGCCGCGAGACTCGCTGATTGTCCAGCCGACCGCAGGAA
TCTGCGTGAAAAGCTTCAAGACAAACAGTGATGAAAAGTTCTTCATTAAC
GTGTGCCAGGCAGCGGAAGTTCCAGCACCGCAGGATGTCACCGAGGAGGA
ACTGATTGGCATACTGGAATCCACTACTCCTGGCTCCTATCGAGTGCCCA
TGAGCATCTCAGATCCCAGATTCACGAAGGATCGTTCCGATAAGACCGTC
GATGTCTGCGACATCGCTATCAACCCAAAGTTTCTGGTAAAGATCCAGAA
GTCGCAGCTCTTCAAGAACTTCTTTATGCAAATTGTGATTGAGGCGATGA
GCGAAAAGTATAATGTGCAGCTCAACATGGAAAAGACCATTATTCTGAAC
AATCGCAAGTTCATCGGCACTTTGGTCACTCATCGTGTGCGCAACGAAGA
TATGAAAAGGGCCCAGTCTACGTCCGGCATTCCTGCTGCTCTTAACAGCC
GGGATGGTGGGGCTGTGGCACCGGAAAATTCCGGAAAACTGGTGCAGGAG
ATCGACGAGAAGGATGCTGCTGCCATAAGGAAGAGTCGACAGTCTGCAGG
CGGCGGTTTTCTGGATATACAGTACAAACTTCGTGGTCGAGTTCGTGACG
AGTCCGTTGACGAAA

BS04085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5792-PA 1008 CG5792-RA 1..799 17..815 3995 100 Plus
CG5792-PB 4005 CG5792-RB 3179..3796 198..815 3090 100 Plus
CG5792-PB 4005 CG5792-RB 1..181 17..197 905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-RA 1194 CG5792-RA 123..921 17..815 3995 100 Plus
Pih1D1-RD 3498 CG5792-RD 123..303 17..197 905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12713679..12714298 815..196 3100 100 Minus
2L 23513712 2L 12721450..12721567 198..81 575 99.2 Minus
2L 23513712 2L 12721653..12721721 85..17 345 100 Minus
Blast to na_te.dros performed 2015-02-02 12:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 8160..8218 505..446 108 66.7 Minus

BS04085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:49 Download gff for BS04085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5792-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:36 Download gff for BS04085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5792-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:30 Download gff for BS04085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 116..918 9..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:59 Download gff for BS04085.5prime
Subject Subject Range Query Range Percent Splice Strand
Pih1D1-RA 116..918 9..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:59 Download gff for BS04085.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12713682..12714296 198..812 100 <- Minus
2L 12721451..12721562 86..197 100 <- Minus
2L 12721653..12721728 9..85 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:30 Download gff for BS04085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12713682..12714296 198..812 100 <- Minus
arm_2L 12721451..12721562 86..197 100 <- Minus
arm_2L 12721653..12721728 9..85 96   Minus

BS04085.complete Sequence

1040 bp (1040 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634859

> BS04085.complete
GAAGTTATCAGTCGACATGTCGCGTCGTTCCAATTTCATTGAGGGCAACG
ACAATTTTCGCGACCAGAACCTGCGCTTTGTGCGGAACGAGTTTGAGGAC
AATATTAACCAGTACTTTGGAGGCGCCGATCCGGAGGGCAGCGGCCCGCA
GCAGAAACCGCCGCCGCGAGACTCGCTGATTGTCCAGCCGACCGCAGGAA
TCTGCGTGAAAAGCTTCAAGACAAACAGTGATGAAAAGTTCTTCATTAAC
GTGTGCCAGGCAGCGGAAGTTCCAGCACCGCAGGATGTCACCGAGGAGGA
ACTGATTGGCATACTGGAATCCACTACTCCTGGCTCCTATCGAGTGCCCA
TGAGCATCTCAGATCCCAGATTCACGAAGGATCGTTCCGATAAGACCGTC
GATGTCTGCGACATCGCTATCAACCCAAAGTTTCTGGTAAAGATCCAGAA
GTCGCAGCTCTTCAAGAACTTCTTTATGCAAATTGTGATTGAGGCGATGA
GCGAAAAGTATAATGTGCAGCTCAACATGGAAAAGACCATTATTCTGAAC
AATCGCAAGTTCATCGGCACTTTGGTCACTCATCGTGTGCGCAACGAAGA
TATGAAAAGGGCCCAGTCTACGTCCGGCATTCCTGCTGCTCTTAACAGCC
GGGATGGTGGGGCTGTGGCACCGGAAAATTCCGGAAAACTGGTGCAGGAG
ATCGACGAGAAGGATGCTGCTGCCATAAGGAAGAGTCGACAGTCTGCAGG
CGGCGGTTTTCTGGATATACAGTACAAACTTCGTGGTCGAGTTCGTGACG
AGTCCGTTGACGAAATCCATGCTGAGATCTACTTGCCCAACTACGTTTCT
TCGCAGGAGTTCAGTCTCCTTGTCGGCGAGGATCGTATCGTGGTGGAAAC
CCGCAAGTATGGCTATGTGTTCAACAAATTCGTCAACTACCGTCTGCAGC
AGGATCGTGCACAAGCTCTGTTCGATAAGACCACCAAGATGCTTCATGTT
CGCATTCCAGTGTTCAGTAACTAAAAGCTTTCTAGACCAT

BS04085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-RA 1008 CG5792-PA 1..1008 17..1024 5040 100 Plus
Pih1D1-RD 3285 CG5792-PD 1..181 17..197 905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-RA 1194 CG5792-RA 123..1132 17..1026 5050 100 Plus
Pih1D1-RD 3498 CG5792-RD 123..303 17..197 905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12713648..12714298 846..196 3255 100 Minus
2L 23513712 2L 12713443..12713586 988..845 720 100 Minus
2L 23513712 2L 12721450..12721567 198..81 575 99.2 Minus
2L 23513712 2L 12721653..12721721 85..17 345 100 Minus
2L 23513712 2L 12713338..12713377 1026..987 200 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:29:21 has no hits.

BS04085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:31 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 1..1008 17..1024 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:04 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 230..1246 9..1026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:47 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 123..1128 17..1022 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:31 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5792-RA 230..1246 9..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:37 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
Pih1D1-RA 123..1128 17..1022 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:37 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12713342..12713375 989..1022 100 <- Minus
2L 12713443..12713586 845..988 100 <- Minus
2L 12713650..12714296 198..844 100 <- Minus
2L 12721451..12721562 86..197 100 <- Minus
2L 12721653..12721721 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:47 Download gff for BS04085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12713342..12713375 989..1022 100 <- Minus
arm_2L 12713443..12713586 845..988 100 <- Minus
arm_2L 12713650..12714296 198..844 100 <- Minus
arm_2L 12721451..12721562 86..197 100 <- Minus
arm_2L 12721653..12721721 17..85 100   Minus

BS04085.pep Sequence

Translation from 16 to 1023

> BS04085.pep
MSRRSNFIEGNDNFRDQNLRFVRNEFEDNINQYFGGADPEGSGPQQKPPP
RDSLIVQPTAGICVKSFKTNSDEKFFINVCQAAEVPAPQDVTEEELIGIL
ESTTPGSYRVPMSISDPRFTKDRSDKTVDVCDIAINPKFLVKIQKSQLFK
NFFMQIVIEAMSEKYNVQLNMEKTIILNNRKFIGTLVTHRVRNEDMKRAQ
STSGIPAALNSRDGGAVAPENSGKLVQEIDEKDAAAIRKSRQSAGGGFLD
IQYKLRGRVRDESVDEIHAEIYLPNYVSSQEFSLLVGEDRIVVETRKYGY
VFNKFVNYRLQQDRAQALFDKTTKMLHVRIPVFSN*

BS04085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pih1D1-PA 335 CG5792-PA 1..335 1..335 1717 100 Plus
Pih1D1-PD 1094 CG5792-PD 1..60 1..60 323 100 Plus