Clone Sequence Records
BS04085.3prime Sequence
932 bp (791 high quality bases) assembled on 2005-12-01
> BS04085.3prime
ATGGTCTAGAAAGCTTTTAGTTACTGAACACTGGAATGCGAACATGAAGC
ATCTTGGTGGTCTTATCGAACAGAGCTTGTGCACGATCCTGCTGCAGACG
GTAGTTGACGAATTTGTTGAACACATAGCCATACTTGCGGGTTTCCACCA
CGATACGATCCTCGCCGACAAGGAGACTGAACTCCTGCGAAGAAACGTAG
TTGGGCAAGTAGATCTCAGCATGGATTTCGTCAACGGACTCGTCACGAAC
TCGACCACGAAGTTTGTACTGTATATCCAGAAAACCGCCGCCTGCAGACT
GTCGACTCTTCCTTATGGCAGCAGCATCCTTCTCGTCGATCTCCTGCACC
AGTTTTCCGGAATTTTCCGGTGCCACAGCCCCACCATCCCGGCTGTTAAG
AGCAGCAGGAATGCCGGACGTAGACTGGGCCCTTTTCATATCTTCGTTGC
GCACACGATGAGTGACCAAAGTGCCGATGAACTTGCGATTGTTCAGAATA
ATGGTCTTTTCCATGTTGAGCTGCACATTATACTTTTCGCTCATCGCCTC
AATCACAATTTGCATAAAGAAGTTCTTGAAGAGCTGCGACTTCTGGATCT
TTACCAGAAACTTTGGGTTGATAGCGATGTCGCAGACATCGACGGTCTTA
TCGGAACGATCCTTCGTGAATCTGGGATCTGAGATGCTCATGGGCACTCG
ATAGGAGCCAGGAGTAGTGGATTCCAGTATGCCAATCAGTTCCTCCTCGG
TGACATCCTGCGGTGCTGGAACTTCCGCTGCCTGGCACACGTTAATGAAG
AACTTTTCATCACTGTTTGTCTTGAAGCTTTTCACGCAGATTCCTGCGGT
CGGCTGGACAATCAGCGAGTCTCGCGGCGGCGGTTTCTGCTGCGGGCCGC
TGCCCTCCGGATCGGCGCCTCCAAAGTACTGG
BS04085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5792-PA | 1008 | CG5792-RA | 93..1008 | 932..17 | 4580 | 100 | Minus |
CG5792-PB | 4005 | CG5792-RB | 3179..4005 | 843..17 | 4135 | 100 | Minus |
CG5792-PB | 4005 | CG5792-RB | 93..181 | 932..844 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pih1D1-RA | 1194 | CG5792-RA | 215..1132 | 932..15 | 4590 | 100 | Minus |
Pih1D1-RD | 3498 | CG5792-RD | 215..303 | 932..844 | 445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12713648..12714298 | 195..845 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 12713443..12713586 | 53..196 | 720 | 100 | Plus |
2L | 23513712 | 2L | 12721450..12721539 | 843..932 | 450 | 100 | Plus |
2L | 23513712 | 2L | 12713338..12713377 | 15..54 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:44:11 has no hits.
BS04085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:48 Download gff for
BS04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-PA | 93..1008 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:35 Download gff for
BS04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-PA | 93..1008 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:29:12 Download gff for
BS04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-RA | 215..1132 | 15..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:28 Download gff for
BS04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pih1D1-RA | 215..1132 | 15..932 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:28 Download gff for
BS04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12721451..12721539 | 844..932 | 100 | | Plus |
2L | 12713338..12713375 | 15..52 | 100 | <- | Plus |
2L | 12713443..12713586 | 53..196 | 100 | <- | Plus |
2L | 12713650..12714296 | 197..843 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:29:12 Download gff for
BS04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12713338..12713375 | 15..52 | 100 | <- | Plus |
arm_2L | 12713443..12713586 | 53..196 | 100 | <- | Plus |
arm_2L | 12713650..12714296 | 197..843 | 100 | <- | Plus |
arm_2L | 12721451..12721539 | 844..932 | 100 | | Plus |
BS04085.5prime Sequence
815 bp (767 high quality bases) assembled on 2005-11-29
> BS04085.5prime
GAAGTTATCAGTCGACATGTCGCGTCGTTCCAATTTCATTGAGGGCAACG
ACAATTTTCGCGACCAGAACCTGCGCTTTGTGCGGAACGAGTTTGAGGAC
AATATTAACCAGTACTTTGGAGGCGCCGATCCGGAGGGCAGCGGCCCGCA
GCAGAAACCGCCGCCGCGAGACTCGCTGATTGTCCAGCCGACCGCAGGAA
TCTGCGTGAAAAGCTTCAAGACAAACAGTGATGAAAAGTTCTTCATTAAC
GTGTGCCAGGCAGCGGAAGTTCCAGCACCGCAGGATGTCACCGAGGAGGA
ACTGATTGGCATACTGGAATCCACTACTCCTGGCTCCTATCGAGTGCCCA
TGAGCATCTCAGATCCCAGATTCACGAAGGATCGTTCCGATAAGACCGTC
GATGTCTGCGACATCGCTATCAACCCAAAGTTTCTGGTAAAGATCCAGAA
GTCGCAGCTCTTCAAGAACTTCTTTATGCAAATTGTGATTGAGGCGATGA
GCGAAAAGTATAATGTGCAGCTCAACATGGAAAAGACCATTATTCTGAAC
AATCGCAAGTTCATCGGCACTTTGGTCACTCATCGTGTGCGCAACGAAGA
TATGAAAAGGGCCCAGTCTACGTCCGGCATTCCTGCTGCTCTTAACAGCC
GGGATGGTGGGGCTGTGGCACCGGAAAATTCCGGAAAACTGGTGCAGGAG
ATCGACGAGAAGGATGCTGCTGCCATAAGGAAGAGTCGACAGTCTGCAGG
CGGCGGTTTTCTGGATATACAGTACAAACTTCGTGGTCGAGTTCGTGACG
AGTCCGTTGACGAAA
BS04085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5792-PA | 1008 | CG5792-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
CG5792-PB | 4005 | CG5792-RB | 3179..3796 | 198..815 | 3090 | 100 | Plus |
CG5792-PB | 4005 | CG5792-RB | 1..181 | 17..197 | 905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pih1D1-RA | 1194 | CG5792-RA | 123..921 | 17..815 | 3995 | 100 | Plus |
Pih1D1-RD | 3498 | CG5792-RD | 123..303 | 17..197 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12713679..12714298 | 815..196 | 3100 | 100 | Minus |
2L | 23513712 | 2L | 12721450..12721567 | 198..81 | 575 | 99.2 | Minus |
2L | 23513712 | 2L | 12721653..12721721 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 12:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 8160..8218 | 505..446 | 108 | 66.7 | Minus |
BS04085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:49 Download gff for
BS04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:36 Download gff for
BS04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:30 Download gff for
BS04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-RA | 116..918 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:59 Download gff for
BS04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pih1D1-RA | 116..918 | 9..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:59 Download gff for
BS04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12713682..12714296 | 198..812 | 100 | <- | Minus |
2L | 12721451..12721562 | 86..197 | 100 | <- | Minus |
2L | 12721653..12721728 | 9..85 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:30 Download gff for
BS04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12713682..12714296 | 198..812 | 100 | <- | Minus |
arm_2L | 12721451..12721562 | 86..197 | 100 | <- | Minus |
arm_2L | 12721653..12721728 | 9..85 | 96 | | Minus |
BS04085.complete Sequence
1040 bp (1040 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634859
> BS04085.complete
GAAGTTATCAGTCGACATGTCGCGTCGTTCCAATTTCATTGAGGGCAACG
ACAATTTTCGCGACCAGAACCTGCGCTTTGTGCGGAACGAGTTTGAGGAC
AATATTAACCAGTACTTTGGAGGCGCCGATCCGGAGGGCAGCGGCCCGCA
GCAGAAACCGCCGCCGCGAGACTCGCTGATTGTCCAGCCGACCGCAGGAA
TCTGCGTGAAAAGCTTCAAGACAAACAGTGATGAAAAGTTCTTCATTAAC
GTGTGCCAGGCAGCGGAAGTTCCAGCACCGCAGGATGTCACCGAGGAGGA
ACTGATTGGCATACTGGAATCCACTACTCCTGGCTCCTATCGAGTGCCCA
TGAGCATCTCAGATCCCAGATTCACGAAGGATCGTTCCGATAAGACCGTC
GATGTCTGCGACATCGCTATCAACCCAAAGTTTCTGGTAAAGATCCAGAA
GTCGCAGCTCTTCAAGAACTTCTTTATGCAAATTGTGATTGAGGCGATGA
GCGAAAAGTATAATGTGCAGCTCAACATGGAAAAGACCATTATTCTGAAC
AATCGCAAGTTCATCGGCACTTTGGTCACTCATCGTGTGCGCAACGAAGA
TATGAAAAGGGCCCAGTCTACGTCCGGCATTCCTGCTGCTCTTAACAGCC
GGGATGGTGGGGCTGTGGCACCGGAAAATTCCGGAAAACTGGTGCAGGAG
ATCGACGAGAAGGATGCTGCTGCCATAAGGAAGAGTCGACAGTCTGCAGG
CGGCGGTTTTCTGGATATACAGTACAAACTTCGTGGTCGAGTTCGTGACG
AGTCCGTTGACGAAATCCATGCTGAGATCTACTTGCCCAACTACGTTTCT
TCGCAGGAGTTCAGTCTCCTTGTCGGCGAGGATCGTATCGTGGTGGAAAC
CCGCAAGTATGGCTATGTGTTCAACAAATTCGTCAACTACCGTCTGCAGC
AGGATCGTGCACAAGCTCTGTTCGATAAGACCACCAAGATGCTTCATGTT
CGCATTCCAGTGTTCAGTAACTAAAAGCTTTCTAGACCAT
BS04085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pih1D1-RA | 1008 | CG5792-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Pih1D1-RD | 3285 | CG5792-PD | 1..181 | 17..197 | 905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pih1D1-RA | 1194 | CG5792-RA | 123..1132 | 17..1026 | 5050 | 100 | Plus |
Pih1D1-RD | 3498 | CG5792-RD | 123..303 | 17..197 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12713648..12714298 | 846..196 | 3255 | 100 | Minus |
2L | 23513712 | 2L | 12713443..12713586 | 988..845 | 720 | 100 | Minus |
2L | 23513712 | 2L | 12721450..12721567 | 198..81 | 575 | 99.2 | Minus |
2L | 23513712 | 2L | 12721653..12721721 | 85..17 | 345 | 100 | Minus |
2L | 23513712 | 2L | 12713338..12713377 | 1026..987 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:29:21 has no hits.
BS04085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:31 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:04 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-RA | 230..1246 | 9..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:47 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-RA | 123..1128 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:31 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5792-RA | 230..1246 | 9..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:37 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pih1D1-RA | 123..1128 | 17..1022 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:37 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12713342..12713375 | 989..1022 | 100 | <- | Minus |
2L | 12713443..12713586 | 845..988 | 100 | <- | Minus |
2L | 12713650..12714296 | 198..844 | 100 | <- | Minus |
2L | 12721451..12721562 | 86..197 | 100 | <- | Minus |
2L | 12721653..12721721 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:47 Download gff for
BS04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12713342..12713375 | 989..1022 | 100 | <- | Minus |
arm_2L | 12713443..12713586 | 845..988 | 100 | <- | Minus |
arm_2L | 12713650..12714296 | 198..844 | 100 | <- | Minus |
arm_2L | 12721451..12721562 | 86..197 | 100 | <- | Minus |
arm_2L | 12721653..12721721 | 17..85 | 100 | | Minus |
BS04085.pep Sequence
Translation from 16 to 1023
> BS04085.pep
MSRRSNFIEGNDNFRDQNLRFVRNEFEDNINQYFGGADPEGSGPQQKPPP
RDSLIVQPTAGICVKSFKTNSDEKFFINVCQAAEVPAPQDVTEEELIGIL
ESTTPGSYRVPMSISDPRFTKDRSDKTVDVCDIAINPKFLVKIQKSQLFK
NFFMQIVIEAMSEKYNVQLNMEKTIILNNRKFIGTLVTHRVRNEDMKRAQ
STSGIPAALNSRDGGAVAPENSGKLVQEIDEKDAAAIRKSRQSAGGGFLD
IQYKLRGRVRDESVDEIHAEIYLPNYVSSQEFSLLVGEDRIVVETRKYGY
VFNKFVNYRLQQDRAQALFDKTTKMLHVRIPVFSN*
BS04085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pih1D1-PA | 335 | CG5792-PA | 1..335 | 1..335 | 1717 | 100 | Plus |
Pih1D1-PD | 1094 | CG5792-PD | 1..60 | 1..60 | 323 | 100 | Plus |