Clone Sequence Records
BS04086.5prime Sequence
879 bp (750 high quality bases) assembled on 2005-12-01
> BS04086.5prime
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAAGGGA
GTCGAGTCTGTTGCCATTTCCCACTCGCC
BS04086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-PA | 1665 | CG8316-RA | 1..863 | 17..879 | 4240 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RA | 1984 | CG8316-RA | 49..911 | 17..879 | 4270 | 99.7 | Plus |
CG8316-RB | 1978 | CG8316-RB | 49..905 | 17..879 | 4170 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17631527..17631817 | 425..135 | 1455 | 100 | Minus |
X | 23542271 | X | 17630864..17631131 | 879..612 | 1295 | 98.9 | Minus |
X | 23542271 | X | 17631182..17631370 | 613..425 | 945 | 100 | Minus |
X | 23542271 | X | 17631882..17631999 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 02:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1076..1139 | 43..106 | 140 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 5820..5869 | 574..623 | 115 | 70 | Plus |
BS04086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:51 Download gff for
BS04086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:40 Download gff for
BS04086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:24 Download gff for
BS04086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..911 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:11 Download gff for
BS04086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..911 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:11 Download gff for
BS04086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17631882..17631999 | 17..134 | 100 | | Minus |
X | 17630864..17631129 | 614..879 | 98 | <- | Minus |
X | 17631182..17631369 | 426..613 | 100 | <- | Minus |
X | 17631527..17631817 | 135..425 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:24 Download gff for
BS04086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17525560..17525850 | 135..425 | 100 | <- | Minus |
arm_X | 17524897..17525162 | 614..879 | 98 | <- | Minus |
arm_X | 17525215..17525402 | 426..613 | 100 | <- | Minus |
arm_X | 17525915..17526032 | 17..134 | 100 | | Minus |
BS04086.3prime Sequence
832 bp (755 high quality bases) assembled on 2005-12-01
> BS04086.3prime
ATGGTCTAGAAAGCTTTTAAAGTATGTACGCCGAGGCGGCAGTAGGTGTA
ACATCATTATCATCGCTGAAGTTCAGCAGGTAATCATCGTCAAAATTGTT
GTGGGGCGAGCTGAATCGAAGTGATTGATCATCAAAGTTGTTGAATGTGG
ACGACGGATGCTTAAAGTAATCCGGCATTGGTTGGCTCATTGGGAACTCC
TCCTCCTCCAATTTTAGTCGCTTGCAAGGCGGCGCCTCGTTTTCATCGCG
ATTGCTACCATAGTTCATAAACTGGGTTGCAGTAAAACGATTAAGAGTGC
CCTTGGAGGTGCTGGGTATATCGTCGCTGGCCCAGGAAGATATGTTTTTG
AAGGGAGAGAGAGTGTCGACTCTAATTATTTGTGGTTTATCGGAAATTTC
ATTGGATAGCTGCTCATCAGTCTTCGGGTTTTCGCCGATTTTTACTTGTT
TGGCCGCATCAGCCGGCTCCTCCTCTCCTGAAGCCTCCCCTCCGGATTCC
TTGTCATCCGATACGGATTCCTCGACTTCTGAGCCAGATTTCTCATCATA
TCTATCCTGTTCTAGATGCAAAACCTCTTCTGACTTTTCTACTTTTACCT
CCTGCTCAAATCCTTCATCTTTCAGCGCCATTTCGAATTCTTCTTCTGAT
ATTTCCTCAAAATCTTCGTCTGTGGCCTCCATTTCGTCACTGTCCTCTTC
TAATTCCGCATTTGGGACACCTGCCTCTTCTGAAGGAGAAAGCCAATCGG
TCTTCTCAAATTTCTCCTCTTCGATATGGCTTATCTCTGGATAGGGAGAA
AAACGCACTTGCTTTGTTGGCGAGTTGGAAAT
BS04086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-PA | 1665 | CG8316-RA | 850..1665 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RB | 1978 | CG8316-RB | 892..1708 | 832..16 | 4085 | 100 | Minus |
CG8316-RA | 1984 | CG8316-RA | 898..1714 | 832..16 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17630061..17630877 | 16..832 | 4085 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 19:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Juan | 4236 | Juan JUAN 4236bp | 265..299 | 73..40 | 118 | 85.7 | Minus |
BS04086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:50 Download gff for
BS04086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 850..1665 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:38 Download gff for
BS04086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-PA | 850..1665 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:21:02 Download gff for
BS04086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 898..1716 | 11..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:39 Download gff for
BS04086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 898..1716 | 11..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:39 Download gff for
BS04086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17630056..17630877 | 11..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:21:02 Download gff for
BS04086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17524089..17524910 | 11..832 | 99 | | Plus |
BS04086.complete Sequence
1697 bp assembled on 2008-08-14
GenBank Submission: FJ634860
> BS04086.complete
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAAGGAG
GTCGAGTCTGTTGCCATTTCCAACTCGCCAACAAAGCAAGTGCGTTTTTC
TCCCTATCCAGAGATAAGCCATATCGAAGAGGAGAAATTTGAGAAGACCG
ATTGGCTTTCTCCTTCAGAAGAGGCAGGTGTCCCAAATGCGGAATTAGAA
GAGGACAGTGACGAAATGGAGGCCACAGACGAAGATTTTGAGGAAATATC
AGAAGAAGAATTCGAAATGGCGCTGAAAGATGAAGGATTTGAGCAGGAGG
TAAAAGTAGAAAAGTCAGAAGAGGTTTTGCATCTAGAACAGGATAGATAT
GATGAGAAATCTGGCTCAGAAGTCGAGGAATCCGTATCGGATGACAAGGA
ATCCGGAGGGGAGGCTTCAGGAGAGGAGGAGCCGGCTGATGCGGCCAAAC
AAGTAAAAATCGGCGAAAACCCGAAGACTGATGAGCAGCTATCCAATGAA
ATTTCCGATAAACCACAAATAATTAGAGTCGACACTCTCTCTCCCTTCAA
AAACATATCTTCCTGGGCCAGCGACGATATACCCAGCACCTCCAAGGGCA
CTCTTAATCGTTTTACTGCAACCCAGTTTATGAACTATGGTAGCAATCGC
GATGAAAACGAGGCGCCGCCTTGCAAGCGACTAAAATTGGAGGAGGAGGA
GTTCCCAATGAGCCAACCAATGCCGGATTACTTTAAGCATCCGTCGTCCA
CATTCAACAACTTTGATGATCAATCACTTCGATTCAGCTCGCCCCACAAC
AATTTTGACGATGATTACCTGCTGAACTTCAGCGATGATAATGATGTTAC
ACCTACTGCCGCCTCGGCGTACATACTTTAAAAGCTTTCTAGACCAT
BS04086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RA | 1665 | CG8316-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
CG8316-RB | 1659 | CG8316-PB | 1..1659 | 17..1681 | 8200 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-RA | 1984 | CG8316-RA | 49..1714 | 17..1682 | 8330 | 100 | Plus |
CG8316-RB | 1978 | CG8316-RB | 49..1708 | 17..1682 | 8205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17630061..17631131 | 1682..612 | 5355 | 100 | Minus |
X | 23542271 | X | 17631527..17631817 | 425..135 | 1455 | 100 | Minus |
X | 23542271 | X | 17631182..17631370 | 613..425 | 945 | 100 | Minus |
X | 23542271 | X | 17631882..17631999 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1076..1139 | 43..106 | 140 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 5820..5869 | 574..623 | 115 | 70 | Plus |
BS04086.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:22 Download gff for
BS04086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 22..1689 | 17..1687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:12 Download gff for
BS04086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..1711 | 17..1679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:00 Download gff for
BS04086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 22..1684 | 17..1679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:59 Download gff for
BS04086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8316-RA | 49..1711 | 17..1679 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:59 Download gff for
BS04086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17630064..17631129 | 614..1679 | 100 | <- | Minus |
X | 17631182..17631369 | 426..613 | 100 | <- | Minus |
X | 17631527..17631817 | 135..425 | 100 | <- | Minus |
X | 17631882..17631999 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:12 Download gff for
BS04086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17524097..17525162 | 614..1679 | 100 | <- | Minus |
arm_X | 17525215..17525402 | 426..613 | 100 | <- | Minus |
arm_X | 17525560..17525850 | 135..425 | 100 | <- | Minus |
arm_X | 17525915..17526032 | 17..134 | 100 | | Minus |
BS04086.pep Sequence
Translation from 16 to 1680
> BS04086.pep
MEKYPLVKEFMGQNWPKDTKMAQLEKELKKRKELIVEEQIVGPRLEQVLF
DLTLVKQCALVVEDNGAGMAQANTMIQDCMFQITRIEELLEMAGLQDILY
YTVHRKEQEFQRKIKLQEDLAEQENQQNTILESRSIVQEFRKEQALKKEA
DKELASVDDQLDQSDREWTITLRSMTDKLNKKIVSVLQMGKLINELKEEL
QKRNLIKTGVTKGAEPSLAGVPSASTISPFQSASDFLNNFIFKNIRPDDN
KSMTSVNREITTKKLETPLRSILIKCKEVESVAISNSPTKQVRFSPYPEI
SHIEEEKFEKTDWLSPSEEAGVPNAELEEDSDEMEATDEDFEEISEEEFE
MALKDEGFEQEVKVEKSEEVLHLEQDRYDEKSGSEVEESVSDDKESGGEA
SGEEEPADAAKQVKIGENPKTDEQLSNEISDKPQIIRVDTLSPFKNISSW
ASDDIPSTSKGTLNRFTATQFMNYGSNRDENEAPPCKRLKLEEEEFPMSQ
PMPDYFKHPSSTFNNFDDQSLRFSSPHNNFDDDYLLNFSDDNDVTPTAAS
AYIL*
BS04086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8316-PA | 554 | CG8316-PA | 1..554 | 1..554 | 2827 | 100 | Plus |
CG8316-PB | 552 | CG8316-PB | 1..552 | 1..554 | 2798 | 99.5 | Plus |