Clone BS04086 Report

Search the DGRC for BS04086

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG8316-RA
Protein status:BS04086.pep: full length peptide match
Sequenced Size:1697

Clone Sequence Records

BS04086.5prime Sequence

879 bp (750 high quality bases) assembled on 2005-12-01

> BS04086.5prime
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAAGGGA
GTCGAGTCTGTTGCCATTTCCCACTCGCC

BS04086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 1665 CG8316-RA 1..863 17..879 4240 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 1984 CG8316-RA 49..911 17..879 4270 99.7 Plus
CG8316-RB 1978 CG8316-RB 49..905 17..879 4170 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17631527..17631817 425..135 1455 100 Minus
X 23542271 X 17630864..17631131 879..612 1295 98.9 Minus
X 23542271 X 17631182..17631370 613..425 945 100 Minus
X 23542271 X 17631882..17631999 134..17 590 100 Minus
Blast to na_te.dros performed 2015-02-10 02:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1076..1139 43..106 140 68.8 Plus
TART-A 13424 TART-A 13424bp 5820..5869 574..623 115 70 Plus

BS04086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:51 Download gff for BS04086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:40 Download gff for BS04086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:24 Download gff for BS04086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..911 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:11 Download gff for BS04086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..911 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:11 Download gff for BS04086.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17631882..17631999 17..134 100   Minus
X 17630864..17631129 614..879 98 <- Minus
X 17631182..17631369 426..613 100 <- Minus
X 17631527..17631817 135..425 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:24 Download gff for BS04086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17525560..17525850 135..425 100 <- Minus
arm_X 17524897..17525162 614..879 98 <- Minus
arm_X 17525215..17525402 426..613 100 <- Minus
arm_X 17525915..17526032 17..134 100   Minus

BS04086.3prime Sequence

832 bp (755 high quality bases) assembled on 2005-12-01

> BS04086.3prime
ATGGTCTAGAAAGCTTTTAAAGTATGTACGCCGAGGCGGCAGTAGGTGTA
ACATCATTATCATCGCTGAAGTTCAGCAGGTAATCATCGTCAAAATTGTT
GTGGGGCGAGCTGAATCGAAGTGATTGATCATCAAAGTTGTTGAATGTGG
ACGACGGATGCTTAAAGTAATCCGGCATTGGTTGGCTCATTGGGAACTCC
TCCTCCTCCAATTTTAGTCGCTTGCAAGGCGGCGCCTCGTTTTCATCGCG
ATTGCTACCATAGTTCATAAACTGGGTTGCAGTAAAACGATTAAGAGTGC
CCTTGGAGGTGCTGGGTATATCGTCGCTGGCCCAGGAAGATATGTTTTTG
AAGGGAGAGAGAGTGTCGACTCTAATTATTTGTGGTTTATCGGAAATTTC
ATTGGATAGCTGCTCATCAGTCTTCGGGTTTTCGCCGATTTTTACTTGTT
TGGCCGCATCAGCCGGCTCCTCCTCTCCTGAAGCCTCCCCTCCGGATTCC
TTGTCATCCGATACGGATTCCTCGACTTCTGAGCCAGATTTCTCATCATA
TCTATCCTGTTCTAGATGCAAAACCTCTTCTGACTTTTCTACTTTTACCT
CCTGCTCAAATCCTTCATCTTTCAGCGCCATTTCGAATTCTTCTTCTGAT
ATTTCCTCAAAATCTTCGTCTGTGGCCTCCATTTCGTCACTGTCCTCTTC
TAATTCCGCATTTGGGACACCTGCCTCTTCTGAAGGAGAAAGCCAATCGG
TCTTCTCAAATTTCTCCTCTTCGATATGGCTTATCTCTGGATAGGGAGAA
AAACGCACTTGCTTTGTTGGCGAGTTGGAAAT

BS04086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 1665 CG8316-RA 850..1665 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RB 1978 CG8316-RB 892..1708 832..16 4085 100 Minus
CG8316-RA 1984 CG8316-RA 898..1714 832..16 4085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17630061..17630877 16..832 4085 100 Plus
Blast to na_te.dros performed 2015-02-10 19:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 265..299 73..40 118 85.7 Minus

BS04086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:50 Download gff for BS04086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 850..1665 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:38 Download gff for BS04086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-PA 850..1665 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:21:02 Download gff for BS04086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 898..1716 11..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:39 Download gff for BS04086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 898..1716 11..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:39 Download gff for BS04086.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17630056..17630877 11..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:21:02 Download gff for BS04086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17524089..17524910 11..832 99   Plus

BS04086.complete Sequence

1697 bp assembled on 2008-08-14

GenBank Submission: FJ634860

> BS04086.complete
GAAGTTATCAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGG
GGCAAAATTGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTC
AAGAAAAGGAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTT
GGAGCAGGTGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAG
TGGAGGATAACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGAC
TGTATGTTCCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCT
GCAGGACATCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGC
GCAAAATTAAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAAC
ACAATCCTCGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGC
CTTAAAAAAAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGG
ACCAGTCGGATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAG
CTTAATAAGAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGA
ATTGAAGGAAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTA
AGGGCGCTGAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCA
CCATTTCAGTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATAT
CAGACCAGATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTA
CTAAGAAGCTGGAGACTCCTCTGCGATCCATTTTGATCAAATGCAAGGAG
GTCGAGTCTGTTGCCATTTCCAACTCGCCAACAAAGCAAGTGCGTTTTTC
TCCCTATCCAGAGATAAGCCATATCGAAGAGGAGAAATTTGAGAAGACCG
ATTGGCTTTCTCCTTCAGAAGAGGCAGGTGTCCCAAATGCGGAATTAGAA
GAGGACAGTGACGAAATGGAGGCCACAGACGAAGATTTTGAGGAAATATC
AGAAGAAGAATTCGAAATGGCGCTGAAAGATGAAGGATTTGAGCAGGAGG
TAAAAGTAGAAAAGTCAGAAGAGGTTTTGCATCTAGAACAGGATAGATAT
GATGAGAAATCTGGCTCAGAAGTCGAGGAATCCGTATCGGATGACAAGGA
ATCCGGAGGGGAGGCTTCAGGAGAGGAGGAGCCGGCTGATGCGGCCAAAC
AAGTAAAAATCGGCGAAAACCCGAAGACTGATGAGCAGCTATCCAATGAA
ATTTCCGATAAACCACAAATAATTAGAGTCGACACTCTCTCTCCCTTCAA
AAACATATCTTCCTGGGCCAGCGACGATATACCCAGCACCTCCAAGGGCA
CTCTTAATCGTTTTACTGCAACCCAGTTTATGAACTATGGTAGCAATCGC
GATGAAAACGAGGCGCCGCCTTGCAAGCGACTAAAATTGGAGGAGGAGGA
GTTCCCAATGAGCCAACCAATGCCGGATTACTTTAAGCATCCGTCGTCCA
CATTCAACAACTTTGATGATCAATCACTTCGATTCAGCTCGCCCCACAAC
AATTTTGACGATGATTACCTGCTGAACTTCAGCGATGATAATGATGTTAC
ACCTACTGCCGCCTCGGCGTACATACTTTAAAAGCTTTCTAGACCAT

BS04086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 1665 CG8316-PA 1..1665 17..1681 8325 100 Plus
CG8316-RB 1659 CG8316-PB 1..1659 17..1681 8200 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-RA 1984 CG8316-RA 49..1714 17..1682 8330 100 Plus
CG8316-RB 1978 CG8316-RB 49..1708 17..1682 8205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17630061..17631131 1682..612 5355 100 Minus
X 23542271 X 17631527..17631817 425..135 1455 100 Minus
X 23542271 X 17631182..17631370 613..425 945 100 Minus
X 23542271 X 17631882..17631999 134..17 590 100 Minus
Blast to na_te.dros performed 2014-11-27 20:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1076..1139 43..106 140 68.8 Plus
TART-A 13424 TART-A 13424bp 5820..5869 574..623 115 70 Plus

BS04086.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:22 Download gff for BS04086.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 22..1689 17..1687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:12 Download gff for BS04086.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..1711 17..1679 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:00 Download gff for BS04086.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 22..1684 17..1679 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:59 Download gff for BS04086.complete
Subject Subject Range Query Range Percent Splice Strand
CG8316-RA 49..1711 17..1679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:59 Download gff for BS04086.complete
Subject Subject Range Query Range Percent Splice Strand
X 17630064..17631129 614..1679 100 <- Minus
X 17631182..17631369 426..613 100 <- Minus
X 17631527..17631817 135..425 100 <- Minus
X 17631882..17631999 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:12 Download gff for BS04086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17524097..17525162 614..1679 100 <- Minus
arm_X 17525215..17525402 426..613 100 <- Minus
arm_X 17525560..17525850 135..425 100 <- Minus
arm_X 17525915..17526032 17..134 100   Minus

BS04086.pep Sequence

Translation from 16 to 1680

> BS04086.pep
MEKYPLVKEFMGQNWPKDTKMAQLEKELKKRKELIVEEQIVGPRLEQVLF
DLTLVKQCALVVEDNGAGMAQANTMIQDCMFQITRIEELLEMAGLQDILY
YTVHRKEQEFQRKIKLQEDLAEQENQQNTILESRSIVQEFRKEQALKKEA
DKELASVDDQLDQSDREWTITLRSMTDKLNKKIVSVLQMGKLINELKEEL
QKRNLIKTGVTKGAEPSLAGVPSASTISPFQSASDFLNNFIFKNIRPDDN
KSMTSVNREITTKKLETPLRSILIKCKEVESVAISNSPTKQVRFSPYPEI
SHIEEEKFEKTDWLSPSEEAGVPNAELEEDSDEMEATDEDFEEISEEEFE
MALKDEGFEQEVKVEKSEEVLHLEQDRYDEKSGSEVEESVSDDKESGGEA
SGEEEPADAAKQVKIGENPKTDEQLSNEISDKPQIIRVDTLSPFKNISSW
ASDDIPSTSKGTLNRFTATQFMNYGSNRDENEAPPCKRLKLEEEEFPMSQ
PMPDYFKHPSSTFNNFDDQSLRFSSPHNNFDDDYLLNFSDDNDVTPTAAS
AYIL*

BS04086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8316-PA 554 CG8316-PA 1..554 1..554 2827 100 Plus
CG8316-PB 552 CG8316-PB 1..552 1..554 2798 99.5 Plus