Clone Sequence Records
BS04089.complete Sequence
998 bp assembled on 2010-04-14
GenBank Submission: KX795366
> BS04089.complete
GAAGTTATCAGTCGACATGGGACAGAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGC
ATCACGACTTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGC
ATCGCTAAGGAATTCTACGACACAATGCCACAGCACACCAGCTGGACCCG
GGTTCTGTACGACTTCATCATGGACCCAGCAGTGGGACCTTACGCACGCG
TGAAGCGACGCCAGCGCGGCCTGGCCTCCTAAAAGCTTTCTAGACCAT
BS04089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 966 | CG9078-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
ifc-RB | 309 | CG9078-PB | 1..309 | 674..982 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 1784 | CG9078-RA | 148..1113 | 17..982 | 4830 | 100 | Plus |
ifc-RB | 1656 | CG9078-RB | 418..985 | 415..982 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5987615..5988183 | 414..982 | 2845 | 100 | Plus |
2L | 23513712 | 2L | 5986495..5986896 | 17..418 | 1995 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:06:26 has no hits.
BS04089.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:14 Download gff for
BS04089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 172..1135 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:11 Download gff for
BS04089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 148..1111 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:38 Download gff for
BS04089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 148..1111 | 17..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:38 Download gff for
BS04089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5986495..5986892 | 17..414 | 100 | -> | Plus |
2L | 5987616..5988181 | 415..980 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:11 Download gff for
BS04089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5986495..5986892 | 17..414 | 100 | -> | Plus |
arm_2L | 5987616..5988181 | 415..980 | 100 | | Plus |
BS04089.3prime Sequence
861 bp (776 high quality bases) assembled on 2005-09-08
> BS04089.3prime
ATGGTCTAGAAAGCTTTTAGGAGGCCAGGCCGCGCTGGCGTCGCTTCACG
CGTGCGTAAGGTCCCACTGCTGGGTCCATGATGAAGTCGTACAGAACCCG
GGTCCAGCTGGTGTGCTGTGGCATTGTGTCGTAGAATTCCTTAGCGATGC
GCTTAACCTCTGGCAGCCTGGAGCCGGGCACCGCCGGAAAGTCGTGATGC
TCGTTGTGGTAGCCCACATTGAAGGTGATCCAGTTGAGCGGACCGTAGTA
GGAGTACGTCTCAAAGCCCTTGGCGAACATGTAGTGCTCCGAGATAAAGT
GTCCGGCCACCGGGTGCAGTCCCATTGCTAGAATACTGCCGATCAACAGA
TAGGCCAGTGGCTTCCAGCCCAGAAAGTAAACGATCAGGGCGTTGAAAGT
TAGCTGCACCACGGTGTTAATAATCTCCAGGCGTGTAGGTGGCTTCGGGT
TAATAATCAGTGGACGGAAAATGTAAAAAAAAGGCTGCAGGCACACCCAC
AGAAATTTTCCAAATGTGGTGTCAAACAGGCGCGCCTCCAGCAGTGTGGG
TATGTCAGTGTCAATTGCCTCATCACCTTGGTAACGGTGATGTTCCAGAT
GGTACTTTTTGAAGGAAATGCTCATGGGCAACCCGATGGGCAGGTTGCAG
ATGAAGCCCAAGATCCGGTTGTGCATAGGTCTGCTGTGTCCAAAGGCCAG
GTTGTGCGAGATCTCGTGAACGGCCAGCATCAACGAGTGGTTGATGATGC
CGCCGAAGCAATAGGCGGCCACGATGAGCCCCGACCACGACAGGTCCTTC
ACGACGAACAGCGCCAGGATCTGTGTGAGCACCATTGCGCCGGCCACCCA
CTTAAAATTCG
BS04089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9078-PA | 966 | ifc-RA | 122..966 | 861..17 | 4175 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 1784 | CG9078-RA | 269..1113 | 861..17 | 4195 | 99.8 | Minus |
ifc-RB | 1656 | CG9078-RB | 418..985 | 584..17 | 2840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5987615..5988183 | 585..17 | 2845 | 100 | Minus |
2L | 23513712 | 2L | 5986616..5986896 | 861..581 | 1360 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:32:40 has no hits.
BS04089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:54 Download gff for
BS04089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-PA | 122..966 | 17..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:44 Download gff for
BS04089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9078-PA | 122..966 | 17..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:18:46 Download gff for
BS04089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 269..1119 | 9..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:47 Download gff for
BS04089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 269..1119 | 9..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:47 Download gff for
BS04089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5986616..5986892 | 585..861 | 99 | -> | Minus |
2L | 5987616..5988189 | 9..584 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:18:46 Download gff for
BS04089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5986616..5986892 | 585..861 | 99 | -> | Minus |
arm_2L | 5987616..5988189 | 9..584 | 99 | | Minus |
BS04089.5prime Sequence
762 bp (721 high quality bases) assembled on 2005-12-01
> BS04089.5prime
GAAGTTATCAGTCGACATGGGACACAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCT
BS04089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9078-PA | 966 | ifc-RA | 1..746 | 17..762 | 3705 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 1784 | CG9078-RA | 148..893 | 17..762 | 3715 | 99.9 | Plus |
ifc-RB | 1656 | CG9078-RB | 418..765 | 415..762 | 1740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5986495..5986896 | 17..418 | 1980 | 99.5 | Plus |
2L | 23513712 | 2L | 5987615..5987963 | 414..762 | 1745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:24:04 has no hits.
BS04089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:55 Download gff for
BS04089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:45 Download gff for
BS04089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9078-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:09 Download gff for
BS04089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 140..893 | 9..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:35 Download gff for
BS04089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 140..893 | 9..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:35 Download gff for
BS04089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5986487..5986892 | 9..414 | 98 | -> | Plus |
2L | 5987616..5987963 | 415..762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:09 Download gff for
BS04089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5986487..5986892 | 9..414 | 98 | -> | Plus |
arm_2L | 5987616..5987963 | 415..762 | 100 | | Plus |
BS04089.pep Sequence
Translation from 16 to 981
> BS04089.pep
MGQKVSRTDFEWVYTEEPHASRRKIILEKYPQIKKLFGHDPNFKWVAGAM
VLTQILALFVVKDLSWSWLIVAAYCFGGIINHSLMLAVHEISHNLAFGHS
RPMHNRILGFICNLPIGLPMSISFKKYHLEHHRYQGDEAIDTDIPTLLEA
RLFDTTFGKFLWVCLQPFFYIFRPLIINPKPPTRLEIINTVVQLTFNALI
VYFLGWKPLAYLLIGSILAMGLHPVAGHFISEHYMFAKGFETYSYYGPLN
WITFNVGYHNEHHDFPAVPGSRLPEVKRIAKEFYDTMPQHTSWTRVLYDF
IMDPAVGPYARVKRRQRGLAS*
BS04089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-PA | 321 | CG9078-PA | 1..321 | 1..321 | 1742 | 100 | Plus |
ifc-PB | 102 | CG9078-PB | 1..102 | 220..321 | 569 | 100 | Plus |