Clone BS04089 Report

Search the DGRC for BS04089

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptifc-RA
Protein status:BS04089.pep: full length peptide match
Sequenced Size:998

Clone Sequence Records

BS04089.complete Sequence

998 bp assembled on 2010-04-14

GenBank Submission: KX795366

> BS04089.complete
GAAGTTATCAGTCGACATGGGACAGAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGC
ATCACGACTTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGC
ATCGCTAAGGAATTCTACGACACAATGCCACAGCACACCAGCTGGACCCG
GGTTCTGTACGACTTCATCATGGACCCAGCAGTGGGACCTTACGCACGCG
TGAAGCGACGCCAGCGCGGCCTGGCCTCCTAAAAGCTTTCTAGACCAT

BS04089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 966 CG9078-PA 1..966 17..982 4830 100 Plus
ifc-RB 309 CG9078-PB 1..309 674..982 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 1784 CG9078-RA 148..1113 17..982 4830 100 Plus
ifc-RB 1656 CG9078-RB 418..985 415..982 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5987615..5988183 414..982 2845 100 Plus
2L 23513712 2L 5986495..5986896 17..418 1995 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 01:06:26 has no hits.

BS04089.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:14 Download gff for BS04089.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 172..1135 17..980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:11 Download gff for BS04089.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 148..1111 17..980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:38 Download gff for BS04089.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 148..1111 17..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:38 Download gff for BS04089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5986495..5986892 17..414 100 -> Plus
2L 5987616..5988181 415..980 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:11 Download gff for BS04089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5986495..5986892 17..414 100 -> Plus
arm_2L 5987616..5988181 415..980 100   Plus

BS04089.3prime Sequence

861 bp (776 high quality bases) assembled on 2005-09-08

> BS04089.3prime
ATGGTCTAGAAAGCTTTTAGGAGGCCAGGCCGCGCTGGCGTCGCTTCACG
CGTGCGTAAGGTCCCACTGCTGGGTCCATGATGAAGTCGTACAGAACCCG
GGTCCAGCTGGTGTGCTGTGGCATTGTGTCGTAGAATTCCTTAGCGATGC
GCTTAACCTCTGGCAGCCTGGAGCCGGGCACCGCCGGAAAGTCGTGATGC
TCGTTGTGGTAGCCCACATTGAAGGTGATCCAGTTGAGCGGACCGTAGTA
GGAGTACGTCTCAAAGCCCTTGGCGAACATGTAGTGCTCCGAGATAAAGT
GTCCGGCCACCGGGTGCAGTCCCATTGCTAGAATACTGCCGATCAACAGA
TAGGCCAGTGGCTTCCAGCCCAGAAAGTAAACGATCAGGGCGTTGAAAGT
TAGCTGCACCACGGTGTTAATAATCTCCAGGCGTGTAGGTGGCTTCGGGT
TAATAATCAGTGGACGGAAAATGTAAAAAAAAGGCTGCAGGCACACCCAC
AGAAATTTTCCAAATGTGGTGTCAAACAGGCGCGCCTCCAGCAGTGTGGG
TATGTCAGTGTCAATTGCCTCATCACCTTGGTAACGGTGATGTTCCAGAT
GGTACTTTTTGAAGGAAATGCTCATGGGCAACCCGATGGGCAGGTTGCAG
ATGAAGCCCAAGATCCGGTTGTGCATAGGTCTGCTGTGTCCAAAGGCCAG
GTTGTGCGAGATCTCGTGAACGGCCAGCATCAACGAGTGGTTGATGATGC
CGCCGAAGCAATAGGCGGCCACGATGAGCCCCGACCACGACAGGTCCTTC
ACGACGAACAGCGCCAGGATCTGTGTGAGCACCATTGCGCCGGCCACCCA
CTTAAAATTCG

BS04089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9078-PA 966 ifc-RA 122..966 861..17 4175 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 1784 CG9078-RA 269..1113 861..17 4195 99.8 Minus
ifc-RB 1656 CG9078-RB 418..985 584..17 2840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5987615..5988183 585..17 2845 100 Minus
2L 23513712 2L 5986616..5986896 861..581 1360 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:32:40 has no hits.

BS04089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:54 Download gff for BS04089.3prime
Subject Subject Range Query Range Percent Splice Strand
ifc-PA 122..966 17..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:44 Download gff for BS04089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9078-PA 122..966 17..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:18:46 Download gff for BS04089.3prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 269..1119 9..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:47 Download gff for BS04089.3prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 269..1119 9..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:47 Download gff for BS04089.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5986616..5986892 585..861 99 -> Minus
2L 5987616..5988189 9..584 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:18:46 Download gff for BS04089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5986616..5986892 585..861 99 -> Minus
arm_2L 5987616..5988189 9..584 99   Minus

BS04089.5prime Sequence

762 bp (721 high quality bases) assembled on 2005-12-01

> BS04089.5prime
GAAGTTATCAGTCGACATGGGACACAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCT

BS04089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9078-PA 966 ifc-RA 1..746 17..762 3705 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 1784 CG9078-RA 148..893 17..762 3715 99.9 Plus
ifc-RB 1656 CG9078-RB 418..765 415..762 1740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5986495..5986896 17..418 1980 99.5 Plus
2L 23513712 2L 5987615..5987963 414..762 1745 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:24:04 has no hits.

BS04089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:55 Download gff for BS04089.5prime
Subject Subject Range Query Range Percent Splice Strand
ifc-PA 1..746 17..762 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:45 Download gff for BS04089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9078-PA 1..746 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:09 Download gff for BS04089.5prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 140..893 9..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:35 Download gff for BS04089.5prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 140..893 9..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:35 Download gff for BS04089.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5986487..5986892 9..414 98 -> Plus
2L 5987616..5987963 415..762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:09 Download gff for BS04089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5986487..5986892 9..414 98 -> Plus
arm_2L 5987616..5987963 415..762 100   Plus

BS04089.pep Sequence

Translation from 16 to 981

> BS04089.pep
MGQKVSRTDFEWVYTEEPHASRRKIILEKYPQIKKLFGHDPNFKWVAGAM
VLTQILALFVVKDLSWSWLIVAAYCFGGIINHSLMLAVHEISHNLAFGHS
RPMHNRILGFICNLPIGLPMSISFKKYHLEHHRYQGDEAIDTDIPTLLEA
RLFDTTFGKFLWVCLQPFFYIFRPLIINPKPPTRLEIINTVVQLTFNALI
VYFLGWKPLAYLLIGSILAMGLHPVAGHFISEHYMFAKGFETYSYYGPLN
WITFNVGYHNEHHDFPAVPGSRLPEVKRIAKEFYDTMPQHTSWTRVLYDF
IMDPAVGPYARVKRRQRGLAS*

BS04089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-PA 321 CG9078-PA 1..321 1..321 1742 100 Plus
ifc-PB 102 CG9078-PB 1..102 220..321 569 100 Plus