Clone BS04090 Report

Search the DGRC for BS04090

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:40
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG6321-RA
Protein status:BS04090.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04090.3prime Sequence

908 bp (889 high quality bases) assembled on 2005-12-01

> BS04090.3prime
ATGGTCTAGAAAGCTTCTATTGCTCGGCTATGTAATCCTTAAGTGCGTTG
CAAAGTCTTCTAGCACCATCCACCAACTTCGACTTCGGATAGAAGGCGAT
GGACAGGCGGAAGAACTGTTTGCCACTTTGACCATCCGCAGAGAAGCGTG
TTCCTACTATAAAGTAGATCTTGTGATTCTCCATGCAGTACTTGAGAAAC
TCCCGGCAGTCCAATCGATCCGGTATCCGCACCCAAATGAAGTATCCGCC
CGTGGGGCTGACCAACTTGCAGCAGTCGGGCAACTCATCTCGAAGCACTT
GCGTGGTGGCCAGCATGCGCTCCTTATAAGCTTCATAGGACTCAGAAATT
TGCTTCTGGGCTAGCTTAAGCTCAAATAGACTGCCCACAATCCCTGATGT
GTAGTTGTTGAAGCATCCACCACTAGTGGCAAAACCACTTCCATCTAAAA
TTGGTTTCAGGCGCGGAGGAACCTCAAGCCAACCCAGGCGAACTCCCGGT
CCCAGAATCTTGGAGAAACTTCCATTGGAGATAACATGTCCTGCGAAGTT
GGCATCATTTCTGTCATCATAGGACAACAGACGGCTGTGTGTGGGCGTTT
CGCCATAGTTGAGAATATTATAAACATCATCGCAGACGACAAGGAAATCA
TAATTCCTAGCAAGTTGCACAATTCCACGACAGACCTCCGGCGAGAATAG
AATCCCCGTGGGATTATGATACGTTGGTATCGTATAGTAGATTCCCCAGA
ACTCTTTCTTCTTCGATTGAAATCGTCGTTTTGATACCTTCTCTTCAAGA
TCCTTCAGATCCACGCCATCATCGTTGAGCTTTACGGGAACTATGGTCAC
AGTGCTAAAGTGTTTTATACTATCTAAAGCAATCATATAGGTGTACTCAT
CGACGAAT

BS04090.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 1257 CG6321-RA 366..1257 908..17 4460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 461..1353 908..16 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11059678..11060350 16..688 3365 100 Plus
3L 28110227 3L 11060420..11060640 688..908 1105 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:41:23 has no hits.

BS04090.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:56 Download gff for BS04090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 366..1257 17..908 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:47 Download gff for BS04090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 366..1257 17..908 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:03:22 Download gff for BS04090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 461..1353 16..908 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:22 Download gff for BS04090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 461..1353 16..908 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:22 Download gff for BS04090.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11060420..11060640 688..908 100   Plus
3L 11059678..11060349 16..687 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:03:22 Download gff for BS04090.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11052778..11053449 16..687 100 <- Plus
arm_3L 11053520..11053740 688..908 100   Plus

BS04090.5prime Sequence

867 bp (759 high quality bases) assembled on 2005-11-29

> BS04090.5prime
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGG
AAGTGGTTTTGCCACTA

BS04090.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 1257 CG6321-RA 1..791 17..807 3955 100 Plus
CG6321-PA 1257 CG6321-RA 789..850 806..867 310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 94..945 15..867 4240 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11060420..11060722 602..300 1515 100 Minus
3L 28110227 3L 11060086..11060350 867..602 1280 99.6 Minus
3L 28110227 3L 11060967..11061131 179..15 825 100 Minus
3L 28110227 3L 11060786..11060908 300..178 615 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:48:36 has no hits.

BS04090.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:57 Download gff for BS04090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 1..849 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:48 Download gff for BS04090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 1..849 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:22 Download gff for BS04090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 94..944 15..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:47 Download gff for BS04090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 94..944 15..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:47 Download gff for BS04090.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11060087..11060349 603..866 99 <- Minus
3L 11060420..11060721 301..602 100 <- Minus
3L 11060786..11060907 179..300 100 <- Minus
3L 11060968..11061131 15..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:22 Download gff for BS04090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11053187..11053449 603..866 99 <- Minus
arm_3L 11053520..11053821 301..602 100 <- Minus
arm_3L 11053886..11054007 179..300 100 <- Minus
arm_3L 11054068..11054231 15..178 100   Minus

BS04090.complete Sequence

1289 bp (1289 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638775

> BS04090.complete
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGGA
AGTGGTTTTGCCACTAGTGGTGGATGCTTCAACAACTACACATCAGGGAT
TGTGGGCAGTCTATTTGAGCTTAAGCTAGCCCAGAAGCAAATTTCTGAGT
CCTATGAAGCTTATAAGGAGCGCATGCTGGCCACCACGCAAGTGCTTCGA
GATGAGTTGCCCGACTGCTGCAAGTTGGTCAGCCCCACGGGCGGATACTT
CATTTGGGTGCGGATACCGGATCGATTGGACTGCCGGGAGTTTCTCAAGT
ACTGCATGGAGAATCACAAGATCTACTTTATAGTAGGAACACGCTTCTCT
GCGGATGGTCAAAGTGGCAAACAGTTCTTCCGCCTGTCCATCGCCTTCTA
TCCGAAGTCGAAGTTGGTGGATGGTGCTAGAAGACTTTGCAACGCACTTA
AGGATTACATAGCCGAGCAATAGAAGCTTTCTAGACCAT

BS04090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1257 CG6321-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 94..1353 15..1274 6300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11059678..11060350 1274..602 3365 100 Minus
3L 28110227 3L 11060420..11060722 602..300 1515 100 Minus
3L 28110227 3L 11060967..11061131 179..15 825 100 Minus
3L 28110227 3L 11060786..11060908 300..178 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:35:04 has no hits.

BS04090.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:32 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:06 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 89..1348 15..1274 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:55 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 101..1352 22..1273 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:32 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 89..1348 15..1274 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:27 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 101..1352 22..1273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:27 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11059679..11060349 603..1273 100 <- Minus
3L 11060420..11060721 301..602 100 <- Minus
3L 11060786..11060907 179..300 100 <- Minus
3L 11060968..11061124 22..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:55 Download gff for BS04090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11052779..11053449 603..1273 100 <- Minus
arm_3L 11053520..11053821 301..602 100 <- Minus
arm_3L 11053886..11054007 179..300 100 <- Minus
arm_3L 11054068..11054224 22..178 100   Minus

BS04090.pep Sequence

Translation from 16 to 1272

> BS04090.pep
MLKSSQDRKLKHLFDGGDWNVYAPNILNLGVGAPGPDILTANCDSFRTAT
DHCLEREKRENQSLIFQYGPTSGTFEVRREISTYFTEMFKSPVNCEDLII
TTGASHGLHILLSTMLDFEGFVFVDEYTYMIALDSIKHFSTVTIVPVKLN
DDGVDLKDLEEKVSKRRFQSKKKEFWGIYYTIPTYHNPTGILFSPEVCRG
IVQLARNYDFLVVCDDVYNILNYGETPTHSRLLSYDDRNDANFAGHVISN
GSFSKILGPGVRLGWLEVPPRLKPILDGSGFATSGGCFNNYTSGIVGSLF
ELKLAQKQISESYEAYKERMLATTQVLRDELPDCCKLVSPTGGYFIWVRI
PDRLDCREFLKYCMENHKIYFIVGTRFSADGQSGKQFFRLSIAFYPKSKL
VDGARRLCNALKDYIAEQ*

BS04090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 418 CG6321-PA 1..418 1..418 2225 100 Plus