Clone Sequence Records
BS04090.3prime Sequence
908 bp (889 high quality bases) assembled on 2005-12-01
> BS04090.3prime
ATGGTCTAGAAAGCTTCTATTGCTCGGCTATGTAATCCTTAAGTGCGTTG
CAAAGTCTTCTAGCACCATCCACCAACTTCGACTTCGGATAGAAGGCGAT
GGACAGGCGGAAGAACTGTTTGCCACTTTGACCATCCGCAGAGAAGCGTG
TTCCTACTATAAAGTAGATCTTGTGATTCTCCATGCAGTACTTGAGAAAC
TCCCGGCAGTCCAATCGATCCGGTATCCGCACCCAAATGAAGTATCCGCC
CGTGGGGCTGACCAACTTGCAGCAGTCGGGCAACTCATCTCGAAGCACTT
GCGTGGTGGCCAGCATGCGCTCCTTATAAGCTTCATAGGACTCAGAAATT
TGCTTCTGGGCTAGCTTAAGCTCAAATAGACTGCCCACAATCCCTGATGT
GTAGTTGTTGAAGCATCCACCACTAGTGGCAAAACCACTTCCATCTAAAA
TTGGTTTCAGGCGCGGAGGAACCTCAAGCCAACCCAGGCGAACTCCCGGT
CCCAGAATCTTGGAGAAACTTCCATTGGAGATAACATGTCCTGCGAAGTT
GGCATCATTTCTGTCATCATAGGACAACAGACGGCTGTGTGTGGGCGTTT
CGCCATAGTTGAGAATATTATAAACATCATCGCAGACGACAAGGAAATCA
TAATTCCTAGCAAGTTGCACAATTCCACGACAGACCTCCGGCGAGAATAG
AATCCCCGTGGGATTATGATACGTTGGTATCGTATAGTAGATTCCCCAGA
ACTCTTTCTTCTTCGATTGAAATCGTCGTTTTGATACCTTCTCTTCAAGA
TCCTTCAGATCCACGCCATCATCGTTGAGCTTTACGGGAACTATGGTCAC
AGTGCTAAAGTGTTTTATACTATCTAAAGCAATCATATAGGTGTACTCAT
CGACGAAT
BS04090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-PA | 1257 | CG6321-RA | 366..1257 | 908..17 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1594 | CG6321-RA | 461..1353 | 908..16 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11059678..11060350 | 16..688 | 3365 | 100 | Plus |
3L | 28110227 | 3L | 11060420..11060640 | 688..908 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:41:23 has no hits.
BS04090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:56 Download gff for
BS04090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 366..1257 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:47 Download gff for
BS04090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 366..1257 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:03:22 Download gff for
BS04090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 461..1353 | 16..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:22 Download gff for
BS04090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 461..1353 | 16..908 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:22 Download gff for
BS04090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11060420..11060640 | 688..908 | 100 | | Plus |
3L | 11059678..11060349 | 16..687 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:03:22 Download gff for
BS04090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11052778..11053449 | 16..687 | 100 | <- | Plus |
arm_3L | 11053520..11053740 | 688..908 | 100 | | Plus |
BS04090.5prime Sequence
867 bp (759 high quality bases) assembled on 2005-11-29
> BS04090.5prime
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGG
AAGTGGTTTTGCCACTA
BS04090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-PA | 1257 | CG6321-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
CG6321-PA | 1257 | CG6321-RA | 789..850 | 806..867 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1594 | CG6321-RA | 94..945 | 15..867 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11060420..11060722 | 602..300 | 1515 | 100 | Minus |
3L | 28110227 | 3L | 11060086..11060350 | 867..602 | 1280 | 99.6 | Minus |
3L | 28110227 | 3L | 11060967..11061131 | 179..15 | 825 | 100 | Minus |
3L | 28110227 | 3L | 11060786..11060908 | 300..178 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:48:36 has no hits.
BS04090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:39:57 Download gff for
BS04090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:58:48 Download gff for
BS04090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:22 Download gff for
BS04090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 94..944 | 15..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:47 Download gff for
BS04090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 94..944 | 15..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:47 Download gff for
BS04090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11060087..11060349 | 603..866 | 99 | <- | Minus |
3L | 11060420..11060721 | 301..602 | 100 | <- | Minus |
3L | 11060786..11060907 | 179..300 | 100 | <- | Minus |
3L | 11060968..11061131 | 15..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:22 Download gff for
BS04090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11053187..11053449 | 603..866 | 99 | <- | Minus |
arm_3L | 11053520..11053821 | 301..602 | 100 | <- | Minus |
arm_3L | 11053886..11054007 | 179..300 | 100 | <- | Minus |
arm_3L | 11054068..11054231 | 15..178 | 100 | | Minus |
BS04090.complete Sequence
1289 bp (1289 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638775
> BS04090.complete
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGGA
AGTGGTTTTGCCACTAGTGGTGGATGCTTCAACAACTACACATCAGGGAT
TGTGGGCAGTCTATTTGAGCTTAAGCTAGCCCAGAAGCAAATTTCTGAGT
CCTATGAAGCTTATAAGGAGCGCATGCTGGCCACCACGCAAGTGCTTCGA
GATGAGTTGCCCGACTGCTGCAAGTTGGTCAGCCCCACGGGCGGATACTT
CATTTGGGTGCGGATACCGGATCGATTGGACTGCCGGGAGTTTCTCAAGT
ACTGCATGGAGAATCACAAGATCTACTTTATAGTAGGAACACGCTTCTCT
GCGGATGGTCAAAGTGGCAAACAGTTCTTCCGCCTGTCCATCGCCTTCTA
TCCGAAGTCGAAGTTGGTGGATGGTGCTAGAAGACTTTGCAACGCACTTA
AGGATTACATAGCCGAGCAATAGAAGCTTTCTAGACCAT
BS04090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1257 | CG6321-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1594 | CG6321-RA | 94..1353 | 15..1274 | 6300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11059678..11060350 | 1274..602 | 3365 | 100 | Minus |
3L | 28110227 | 3L | 11060420..11060722 | 602..300 | 1515 | 100 | Minus |
3L | 28110227 | 3L | 11060967..11061131 | 179..15 | 825 | 100 | Minus |
3L | 28110227 | 3L | 11060786..11060908 | 300..178 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:04 has no hits.
BS04090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:32 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:06 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 89..1348 | 15..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:55 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 101..1352 | 22..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:32 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 89..1348 | 15..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:27 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 101..1352 | 22..1273 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:27 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11059679..11060349 | 603..1273 | 100 | <- | Minus |
3L | 11060420..11060721 | 301..602 | 100 | <- | Minus |
3L | 11060786..11060907 | 179..300 | 100 | <- | Minus |
3L | 11060968..11061124 | 22..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:55 Download gff for
BS04090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11052779..11053449 | 603..1273 | 100 | <- | Minus |
arm_3L | 11053520..11053821 | 301..602 | 100 | <- | Minus |
arm_3L | 11053886..11054007 | 179..300 | 100 | <- | Minus |
arm_3L | 11054068..11054224 | 22..178 | 100 | | Minus |
BS04090.pep Sequence
Translation from 16 to 1272
> BS04090.pep
MLKSSQDRKLKHLFDGGDWNVYAPNILNLGVGAPGPDILTANCDSFRTAT
DHCLEREKRENQSLIFQYGPTSGTFEVRREISTYFTEMFKSPVNCEDLII
TTGASHGLHILLSTMLDFEGFVFVDEYTYMIALDSIKHFSTVTIVPVKLN
DDGVDLKDLEEKVSKRRFQSKKKEFWGIYYTIPTYHNPTGILFSPEVCRG
IVQLARNYDFLVVCDDVYNILNYGETPTHSRLLSYDDRNDANFAGHVISN
GSFSKILGPGVRLGWLEVPPRLKPILDGSGFATSGGCFNNYTSGIVGSLF
ELKLAQKQISESYEAYKERMLATTQVLRDELPDCCKLVSPTGGYFIWVRI
PDRLDCREFLKYCMENHKIYFIVGTRFSADGQSGKQFFRLSIAFYPKSKL
VDGARRLCNALKDYIAEQ*
BS04090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-PA | 418 | CG6321-PA | 1..418 | 1..418 | 2225 | 100 | Plus |