Clone Sequence Records
BS04107.3prime Sequence
908 bp (839 high quality bases) assembled on 2005-12-01
> BS04107.3prime
ATGGTCTAGAAAGCTTTTAGTTCAGTTTCTTCTCTTCCTTGAGCTCCTTG
AGTCGATTCAGGCGCTGGAGAAGAGTCGGATGTGAGTGGTTCCAAGTCGA
GTACAGCCAATCGTAAACGGGGAAGCCAAGGTTGTCAACGTTCAGTTTTA
TGAGGGCCTGACCCAACTGCTCAGCGAATCCCAACTTGAAAGCGAACTCA
TCAGCCTGATACTCGAATCGTCGCGACAAAATTGTCATGGCGAAGTTCAT
GAGGGCATTGTATGGCGCGAGTACGTAGGTAAAGACGATTAGCAAACCGA
CGAGAATGGGCCGAGTACCAGGTTGGAATCCCATGGCCACGTAGAATGGT
GGATACTTGAAGACATTTCCAAAGACCAGGAACATCAGAAAGAGATGAAC
CTGCATGATAATAATGTTCTTGGTAACGTGTCCCAGTTTCCAGTGTCCCA
GCTCGTGTCCCAAAACAGCCAGCACCTCCTCGTCGGTGCAACCCTTTCCC
TTTTCTTCCTCTGACAACTCGGAGTCGTCCGGTTTACCTTTGTTTAGCAG
CAGCGTGTCGAATAGCACGATCCTCTTCGAGTTCCAGAGGCCATAGAAGT
AGGCATTGCTGTGCGAGGAGCGCTTGGATCCCTCCACCACGAAAAGCTTA
GTGAGCGGGAACTTGAGCGATGCGGCCAGATCCTCAATCGATTGCCTCAG
AGCACCCTTCTCCAGCGGAGTATACTTGTCGAACAGGGGAGCAATGAAAA
TCGGATACAAAGTGAGTAGAACCAGCGAGATAACGCCTGTGAAGATCCAC
AGCCATATGAAAAAGTTGTCGCCGCCGCGTTGCACGATGAAGATAATAGC
CGCTGTGATGGGGATCATGAGGACCTGGGTGACTAGGAAGCCTTTGAGCT
GATCCCAG
BS04107.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9000-PA | 1356 | CG9000-RA | 465..1356 | 908..17 | 4435 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 544..1435 | 908..17 | 4445 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000356..17001247 | 17..908 | 4445 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:28:39 has no hits.
BS04107.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:15 Download gff for
BS04107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 465..1356 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:12 Download gff for
BS04107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 465..1356 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:47:18 Download gff for
BS04107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 544..1446 | 8..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:07:23 Download gff for
BS04107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 544..1446 | 8..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:07:23 Download gff for
BS04107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000345..17001247 | 8..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:47:18 Download gff for
BS04107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12887850..12888752 | 8..908 | 99 | | Plus |
BS04107.5prime Sequence
878 bp (808 high quality bases) assembled on 2005-11-29
> BS04107.5prime
GAAGTTATCAGTCGACATGTCATCATTGGACGCAGACACCGTGCTGCTGA
GCATTTTGTTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATCG
CTGCGCCAGGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAACT
GAAGTCACACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGTC
TGGACCAGGAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCC
CTGCTTTGCATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGCT
GTCCGTCCAGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATCA
TCGTCAGCTGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAAG
GGACTGCCCTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATGG
CTTTAACAAACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGCT
TCCTAGTCACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTTC
ATCGTGCAACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCAC
AGGCGTTATCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCTC
CCCTGTTCGACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATCG
ATTGAGGATCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCGT
GGTGGAGGGATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGCC
TCTGGAACTCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTAAACAAA
GGTAAACCGGACGACTCCGAGTTGTCAG
BS04107.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9000-PA | 1356 | CG9000-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 80..941 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000850..17001622 | 878..106 | 3865 | 100 | Minus |
| 2R | 25286936 | 2R | 17001768..17001862 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:43:35 has no hits.
BS04107.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:16 Download gff for
BS04107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:13 Download gff for
BS04107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:11 Download gff for
BS04107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..941 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:17 Download gff for
BS04107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..941 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:17 Download gff for
BS04107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000850..17001618 | 110..878 | 100 | <- | Minus |
| 2R | 17001770..17001862 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:11 Download gff for
BS04107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12888355..12889123 | 110..878 | 100 | <- | Minus |
| arm_2R | 12889275..12889367 | 17..109 | 100 | | Minus |
BS04107.complete Sequence
1388 bp (1388 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634861
> BS04107.complete
GAAGTTATCAGTCGACATGTCATCATTGGACGCAGACACCGTGCTGCTGA
GCATTTTGTTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATCG
CTGCGCCAGGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAACT
GAAGTCACACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGTC
TGGACCAGGAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCC
CTGCTTTGCATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGCT
GTCCGTCCAGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATCA
TCGTCAGCTGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAAG
GGACTGCCCTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATGG
CTTTAACAAACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGCT
TCCTAGTCACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTTC
ATCGTGCAACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCAC
AGGCGTTATCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCTC
CCCTGTTCGACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATCG
ATTGAGGATCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCGT
GGTGGAGGGATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGCC
TCTGGAACTCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTAAACAAA
GGTAAACCGGACGACTCCGAGTTGTCAGAGGAAGAAAAGGGAAAGGGTTG
CACCGACGAGGAGGTGCTGGCTGTTTTGGGACACGAGCTGGGACACTGGA
AACTGGGACACGTTACCAAGAACATTATTATCATGCAGGTTCATCTCTTT
CTGATGTTCCTGGTCTTTGGAAATGTCTTCAAGTATCCACCATTCTACGT
GGCCATGGGATTCCAACCTGGTACTCGGCCCATTCTCGTCGGTTTGCTAA
TCGTCTTTACCTACGTACTCGCGCCATACAATGCCCTCATGAACTTCGCC
ATGACAATTTTGTCGCGACGATTCGAGTATCAGGCTGATGAGTTCGCTTT
CAAGTTGGGATTCGCTGAGCAGTTGGGTCAGGCCCTCATAAAACTGAACG
TTGACAACCTTGGCTTCCCCGTTTACGATTGGCTGTACTCGACTTGGAAC
CACTCACATCCGACTCTTCTCCAGCGCCTGAATCGACTCAAGGAGCTCAA
GGAAGAGAAGAAACTGAACTAAAAGCTTTCTAGACCAT
BS04107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1356 | CG9000-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 80..1435 | 17..1372 | 6780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000356..17001622 | 1372..106 | 6335 | 100 | Minus |
| 2R | 25286936 | 2R | 17001768..17001862 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:42:12 has no hits.
BS04107.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:17 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 1..1356 | 17..1372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:47 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 65..1431 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:22 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..1433 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:17 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 65..1431 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:52 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..1433 | 17..1370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:52 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17001770..17001862 | 17..109 | 100 | | Minus |
| 2R | 17000358..17001618 | 110..1370 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:22 Download gff for
BS04107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12887863..12889123 | 110..1370 | 100 | <- | Minus |
| arm_2R | 12889275..12889367 | 17..109 | 100 | | Minus |
BS04107.pep Sequence
Translation from 16 to 1371
> BS04107.pep
MSSLDADTVLLSILFLVVIENALEIYISLRQVKVYQTALKVPAELKSHMG
EDTFHKARKYGLDQEKFGIFKAVVMDVALLCMELYIGLIAVLWQLSVQVV
DKLQWDSKNEIIVSCVFVLISNVLSTFKGLPFKIYKIFVLEETHGFNKQT
ARFFAWDQLKGFLVTQVLMIPITAAIIFIVQRGGDNFFIWLWIFTGVISL
VLLTLYPIFIAPLFDKYTPLEKGALRQSIEDLAASLKFPLTKLFVVEGSK
RSSHSNAYFYGLWNSKRIVLFDTLLLNKGKPDDSELSEEEKGKGCTDEEV
LAVLGHELGHWKLGHVTKNIIIMQVHLFLMFLVFGNVFKYPPFYVAMGFQ
PGTRPILVGLLIVFTYVLAPYNALMNFAMTILSRRFEYQADEFAFKLGFA
EQLGQALIKLNVDNLGFPVYDWLYSTWNHSHPTLLQRLNRLKELKEEKKL
N*
BS04107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-PA | 451 | CG9000-PA | 1..451 | 1..451 | 2324 | 100 | Plus |
| ste24b-PA | 447 | CG9001-PA | 8..446 | 5..445 | 769 | 37.8 | Plus |
| ste24c-PC | 456 | CG9002-PC | 10..440 | 4..438 | 763 | 37.1 | Plus |
| ste24c-PD | 456 | CG9002-PD | 10..440 | 4..438 | 763 | 37.1 | Plus |
| ste24c-PA | 456 | CG9002-PA | 10..440 | 4..438 | 763 | 37.1 | Plus |
