Clone Sequence Records
BS04110.3prime Sequence
955 bp (837 high quality bases) assembled on 2005-12-01
> BS04110.3prime
ATGGTCTAGAAAGCTTCTACTTTGATTTCATTGCACTTAGGGATTTGCGG
GGCGCGGACTGCCGCTGGCGGGCAAGGAATGTCTGGCCAGAGCCCATCAA
TATTGCCAGCTTAGAGTCGATTGCATCACGCTGGGCATTGACACCCAGTC
TGTAGAAAGCGGAGGTCATGAGTTGCTCCTCCATCACACTCATCTTCGGC
TTGGGCTCCTCCTCGACGAGATCAGCACTCTTTTCCAGTACGCTAGCATC
CAGAGCACTGGCAATTCGAGGATCTATGCTTTTGATCACCTCCTTAGCTT
TCTCCACGCATTTTCGGTATTTGGCGTCATACACCAGAATTTCCTGCTCA
CGCGCTGATAAATTGGTTTCCAGCTGAGTCACCTTGCATTGCAGAGACGT
GCTCTGGGTAACTGCTTCCTCCAGTTGGAGTGTCTTTTGTTCATTTAGCT
CCATTAACTGTTTGATTTGTTTACCAAACTCGCTCTCTTTTAAAATGGGA
TCATCGCTTTGAGAAGCATGCGACAGGGAAAGAATGCGTTCATTGGCTGT
TTTTAGCTGCTCACGCAAATTCTCGCAGCGTTTATTGGCATCGTCCAGCA
GTTGCGCCAAAGCTGTCTGGCCACCCTGTCCCTCGCGCAGAGCCTTGTTC
TCCGCCTCCAGTCGCTGTAGTTTTTCCACTGTGGCCGACGGTTGCAGTTC
CCTGGAAACCGTGGTGCCTGTCAGCGCTGTGTTCGAGGACAATTGTCCGC
ATTTCAGCTCGTCGACTGCCTCGCGAAGGTTGTCGCGCTCCTTGAGCAAA
CTGTCTTTGGCCCGCTGCAGAGCCAGGTTCTTGCTTTCCAAATCTTGTTA
TCAAACTCCACTTTACATTCTTGCTGCTCTCGGCGTCAAGCTTGGCATGA
AGGTCTTGAATCTCTTTCTTGAACAGCTCCACTTGGCCTTTGGTTGTTGG
CATAT
BS04110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10653-PA | 2040 | hk-RA | 1214..2040 | 843..17 | 4135 | 100 | Minus |
| CG10653-PA | 2040 | hk-RA | 1111..1195 | 944..860 | 400 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hk-RA | 2317 | CG10653-RA | 1219..2160 | 955..15 | 4625 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19031821..19032172 | 605..955 | 1600 | 98.9 | Plus |
| 2L | 23513712 | 2L | 19031001..19031242 | 15..256 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 19031293..19031469 | 256..432 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 19031643..19031763 | 485..605 | 605 | 100 | Plus |
| 2L | 23513712 | 2L | 19031527..19031579 | 433..485 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:44:44 has no hits.
BS04110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:40:21 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:18 Download gff for
BS04110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10653-PA | 1101..2040 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:44 Download gff for
BS04110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 1219..2160 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:07 Download gff for
BS04110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 1219..2160 | 15..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:07 Download gff for
BS04110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19031001..19031241 | 15..255 | 100 | <- | Plus |
| 2L | 19031293..19031469 | 256..432 | 100 | <- | Plus |
| 2L | 19031527..19031579 | 433..485 | 100 | <- | Plus |
| 2L | 19031644..19031762 | 486..604 | 100 | <- | Plus |
| 2L | 19031821..19032172 | 605..955 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:44 Download gff for
BS04110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19031001..19031241 | 15..255 | 100 | <- | Plus |
| arm_2L | 19031293..19031469 | 256..432 | 100 | <- | Plus |
| arm_2L | 19031527..19031579 | 433..485 | 100 | <- | Plus |
| arm_2L | 19031644..19031762 | 486..604 | 100 | <- | Plus |
| arm_2L | 19031821..19032172 | 605..955 | 98 | | Plus |
BS04110.5prime Sequence
837 bp (789 high quality bases) assembled on 2005-12-01
> BS04110.5prime
GAAGTTATCAGTCGACATGTCCGCGCCCAAGAACGAGATGTACTATAGCT
TGCTGGAGTGGTTCAAGACCCTCAATCTAAATGCCCCGCATGCGGATGCG
GAATCCTTAGCTGACGGAGTGGCACTGGCTCAGGCTCTTAACCAGTTCGC
CCCCGAATCCTTCACCGACGCTTGGCTTTCCAAGATCAAGGCCAGTGCCG
TGGGCAGCAACTGGCGATTGCGGATGAGCAATCTTAAAAAGGTGACCCAG
TCCGTGTACGACTACTACAGCGACGTACTGAACTACTCGCTGAGTGATTT
CTCGAAGCCTGATCTGCAGAGGATCGCTGAGAAGTGCGACTTGGGAGAGC
TGGAGCGTCTGCTGCAGTTGGTCCTTGGTTGCGCCGTGAACTGTGCAGAG
AAGCAGTCCTACATCACAGAGATCATGTGTCTGGAGGAGGAACTGCAAGC
AAACATTATGCGCGCCCTTCAGGAACTTGAGGCCACTAGGCAAGCATCCA
CGCCGGAGGGCGGTGTAGCCAGTTCCTTGTCCCGTGGCTCTCGCACAGGA
CTCCTGGACAGCAAGGCAGTTCAGGAGGATCGCGACGCCCTGGCACAAAA
ATGCTTCGAGACGGAAAAGAAAATGCTCCTTCTCATAGACGAGAAAACGA
ATCTCCAACAGGAGTTGCATAAGCTGCAGCAAGAGTTTGCCCGCCTAGAG
CAACACTCCACGGTGATCGGAGATGATGGAGTCTCTTTGGGGCCAGTTCA
AACAGGATCTGTGCGCTACAACGAACTCCGGCGTCAATTGGACCTACTAA
AAGAGGAACTTCTTCAGTCTGAAGGAGCTCGGGAGGA
BS04110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10653-PA | 2040 | hk-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hk-RA | 2317 | CG10653-RA | 117..939 | 15..837 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19032505..19033211 | 837..131 | 3535 | 100 | Minus |
| 2L | 23513712 | 2L | 19033263..19033382 | 134..15 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:07:52 has no hits.
BS04110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:40:22 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:20 Download gff for
BS04110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10653-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:13 Download gff for
BS04110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 117..938 | 15..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:38 Download gff for
BS04110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 117..938 | 15..836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:38 Download gff for
BS04110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19032506..19033208 | 134..836 | 100 | <- | Minus |
| 2L | 19033264..19033382 | 15..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:13 Download gff for
BS04110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19032506..19033208 | 134..836 | 100 | <- | Minus |
| arm_2L | 19033264..19033382 | 15..133 | 100 | | Minus |
BS04110.complete Sequence
2072 bp assembled on 2008-08-14
GenBank Submission: FJ634862
> BS04110.complete
GAAGTTATCAGTCGACATGTCCGCGCCCAAGAACGAGATGTACTATAGCT
TGCTGGAGTGGTTCAAGACCCTCAATCTAAATGCCCCGCATGCGGATGCG
GAATCCTTAGCTGACGGAGTGGCACTGGCTCAGGCTCTTAACCAGTTCGC
CCCCGAATCCTTCACCGACGCTTGGCTTTCCAAGATCAAGGCCAGTGCCG
TGGGCAGCAACTGGCGATTGCGGATGAGCAATCTTAAAAAGGTGACCCAG
TCCGTGTACGACTACTACAGCGACGTACTGAACTACTCGCTGAGTGATTT
CTCGAAGCCTGATCTGCAGAGGATCGCTGAGAAGTGCGACTTGGGAGAGC
TGGAGCGTCTGCTGCAGTTGGTCCTTGGTTGCGCCGTGAACTGTGCAGAG
AAGCAGTCCTACATCACAGAGATCATGTGTCTGGAGGAGGAACTGCAAGC
AAACATTATGCGCGCCCTTCAGGAACTTGAGGCCACTAGGCAAGCATCCA
CGCCGGAGGGCGGTGTAGCCAGTTCCTTGTCCCGTGGCTCTCGCACAGGA
CTCCTGGACAGCAAGGCAGTTCAGGAGGATCGCGACGCCCTGGCACAAAA
ATGCTTCGAGACGGAAAAGAAAATGCTCCTTCTCATAGACGAGAAAACGA
ATCTCCAACAGGAGTTGCATAAGCTGCAGCAAGAGTTTGCCCGCCTAGAG
CAACACTCCACGGTGATCGGAGATGATGGAGTCTCTTTGGGGCCAGTTCA
AACAGGATCTGTGCGCTACAACGAACTCCGGCGTCAATTGGACCTACTAA
AAGAGGAACTTCTTCAGTCTGAAGGAGCTCGGGAGGACCTTAAAATCAAG
GCCCAGCAACAAGATACCGATCTGCTGCACATGCAAATGCGCATAGAGGA
ATTAATGAAAAGTTCCGCTGAAGTGACCACACTGAAGGATGAAGTGGATG
TTCTGCGGGAGTCCAACGACAAGCTTAAGATATGCGAGGCCCAGCTTGAC
ACGTATAAAAAGAAGCTAGAAGACTATAACGACCTGAAAAAACAAGTAAA
AATTCTGGAGGAGCGTAGCGCCGACTATGTGCAGCAGAATGCGCAGTTTG
AGGAGGATGCCAAACGATATGCCAACACCAAAGGCCAAGTGGAGCTGTTC
AAGAAAGAGATTCAAGACCTTCATGCCAAGCTGGACGCCGAGAGCAGCAA
GAATGTAAAGTTGGAGTTTGATAACAAGAATTTGGAAAGCAAGAACCTGG
CTCTGCAGCGGGCCAAAGACAGTTTGCTCAAGGAGCGCGACAACCTTCGC
GAGGCAGTCGACGAGCTGAAATGCGGACAATTGTCCTCGAACACAGCGCT
GACAGGCACCACGGTTTCCAGGGAACTGCAACCGTCGGCCACAGTGGAAA
AACTACAGCGACTGGAGGCGGAGAACAAGGCTCTGCGCGAGGGACAGGGT
GGCCAGACAGCTTTGGCGCAACTGCTGGACGATGCCAATAAACGCTGCGA
GAATTTGCGTGAGCAGCTAAAAACAGCCAATGAACGCATTCTTTCCCTGT
CGCATGCTTCTCAAAGCGATGATCCCATTTTAAAAGAGAGCGAGTTTGGT
AAACAAATCAAACAGTTAATGGAGCTAAATGAACAAAAGACACTCCAACT
GGAGGAAGCAGTTACCCAGAGCACGTCTCTGCAATGCAAGGTGACTCAGC
TGGAAACCAATTTATCAGCGCGTGAGCAGGAAATTCTGGTGTATGACGCC
AAATACCGAAAATGCGTGGAGAAAGCTAAGGAGGTGATCAAAAGCATAGA
TCCTCGAATTGCCAGTGCTCTGGATGCTAGCGTACTGGAAAAGAGTGCTG
ATCTCGTCGAGGAGGAGCCCAAGCCGAAGATGAGTGTGATGGAGGAGCAA
CTCATGACCTCCGCTTTCTACAGACTGGGTGTCAATGCCCAGCGTGATGC
AATCGACTCTAAGCTGGCAATATTGATGGGCTCTGGCCAGACATTCCTTG
CCCGCCAGCGGCAGTCCGCGCCCCGCAAATCCCTAAGTGCAATGAAATCA
AAGTAGAAGCTTTCTAGACCAT
BS04110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hk-RA | 2040 | CG10653-PA | 1..2040 | 17..2056 | 10200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hk-RA | 2317 | CG10653-RA | 117..2160 | 15..2058 | 10220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19032435..19033211 | 907..131 | 3885 | 100 | Minus |
| 2L | 23513712 | 2L | 19031821..19032382 | 1468..907 | 2810 | 100 | Minus |
| 2L | 23513712 | 2L | 19031001..19031242 | 2058..1817 | 1210 | 100 | Minus |
| 2L | 23513712 | 2L | 19031293..19031469 | 1817..1641 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 19031643..19031763 | 1588..1468 | 605 | 100 | Minus |
| 2L | 23513712 | 2L | 19033263..19033382 | 134..15 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 19031527..19031579 | 1640..1588 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:16:41 has no hits.
BS04110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:04 Download gff for
BS04110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 114..2157 | 15..2058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:46 Download gff for
BS04110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 119..2158 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:58 Download gff for
BS04110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 116..2155 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:15 Download gff for
BS04110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hk-RA | 119..2158 | 17..2056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:15 Download gff for
BS04110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19031003..19031241 | 1818..2056 | 100 | <- | Minus |
| 2L | 19031293..19031469 | 1641..1817 | 100 | <- | Minus |
| 2L | 19031527..19031579 | 1588..1640 | 100 | <- | Minus |
| 2L | 19031644..19031762 | 1469..1587 | 100 | <- | Minus |
| 2L | 19031821..19032381 | 908..1468 | 100 | <- | Minus |
| 2L | 19032435..19033208 | 134..907 | 100 | <- | Minus |
| 2L | 19033264..19033380 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:46 Download gff for
BS04110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19031003..19031241 | 1818..2056 | 100 | <- | Minus |
| arm_2L | 19031293..19031469 | 1641..1817 | 100 | <- | Minus |
| arm_2L | 19031527..19031579 | 1588..1640 | 100 | <- | Minus |
| arm_2L | 19031644..19031762 | 1469..1587 | 100 | <- | Minus |
| arm_2L | 19031821..19032381 | 908..1468 | 100 | <- | Minus |
| arm_2L | 19032435..19033208 | 134..907 | 100 | <- | Minus |
| arm_2L | 19033264..19033380 | 17..133 | 100 | | Minus |
BS04110.pep Sequence
Translation from 16 to 2055
> BS04110.pep
MSAPKNEMYYSLLEWFKTLNLNAPHADAESLADGVALAQALNQFAPESFT
DAWLSKIKASAVGSNWRLRMSNLKKVTQSVYDYYSDVLNYSLSDFSKPDL
QRIAEKCDLGELERLLQLVLGCAVNCAEKQSYITEIMCLEEELQANIMRA
LQELEATRQASTPEGGVASSLSRGSRTGLLDSKAVQEDRDALAQKCFETE
KKMLLLIDEKTNLQQELHKLQQEFARLEQHSTVIGDDGVSLGPVQTGSVR
YNELRRQLDLLKEELLQSEGAREDLKIKAQQQDTDLLHMQMRIEELMKSS
AEVTTLKDEVDVLRESNDKLKICEAQLDTYKKKLEDYNDLKKQVKILEER
SADYVQQNAQFEEDAKRYANTKGQVELFKKEIQDLHAKLDAESSKNVKLE
FDNKNLESKNLALQRAKDSLLKERDNLREAVDELKCGQLSSNTALTGTTV
SRELQPSATVEKLQRLEAENKALREGQGGQTALAQLLDDANKRCENLREQ
LKTANERILSLSHASQSDDPILKESEFGKQIKQLMELNEQKTLQLEEAVT
QSTSLQCKVTQLETNLSAREQEILVYDAKYRKCVEKAKEVIKSIDPRIAS
ALDASVLEKSADLVEEEPKPKMSVMEEQLMTSAFYRLGVNAQRDAIDSKL
AILMGSGQTFLARQRQSAPRKSLSAMKSK*
BS04110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hk-PA | 679 | CG10653-PA | 1..679 | 1..679 | 3366 | 100 | Plus |
| Girdin-PB | 1235 | CG12734-PB | 19..568 | 11..631 | 228 | 20.8 | Plus |
| Girdin-PD | 1236 | CG12734-PD | 19..568 | 11..631 | 228 | 20.8 | Plus |
| Girdin-PE | 1346 | CG12734-PE | 19..568 | 11..631 | 228 | 20.8 | Plus |
| Girdin-PC | 1380 | CG12734-PC | 19..568 | 11..631 | 228 | 20.8 | Plus |
