Clone Sequence Records
BS04113.3prime Sequence
780 bp (720 high quality bases) assembled on 2005-09-08
> BS04113.3prime
ATGGTCTAGAAAGCTTCTAATTGCTGTTGTTGGCGGAGCTGCTGTGGTTG
TTCTGGTCCACACTGTCCATGTTGGGCACGTAGTCGAGGGCCATCATGCA
GGCGAAAACGGTCATCACCATTTTCGGCTTCACCTCGGTGATGTCCTCGG
GCAGGGCGTAGACACGGGCGCCGATCTTGCGGGCCATGGAGATGGCATAC
TTGGCATTGGCCAGGTTATCCTCCTGTGTTCCGCTAGTGCGCACCAACTC
GTAGTTAATGCTGCCCTCCTTGATGGCATCGATCAGATCGATCACGATCT
TGCCATCGGCGATGGCCGGATCGTTGAAGTTACGCAGCTGCGACTGTTTG
CCTGCCTCCGACAGTCGGTTATTCACCCACTGGACGATCTCCTTCTCGAT
AATGGGGTTGCCAGTGTTGGCCAAGCGGGACAGAATGGACAGGGTGTAGG
CACGCATAAGCTGCCAGATGAGAGCCAACGTCAGCGTGGCATTGCCATCG
TTTAGATCCTGGCCTGCGATTCCGACCAGCGAGAATTTGAGCTGCTTGCC
CAGATCCACCGCATAGTTGCAGTTCTCCAGCTTTTCCATGAACTTGCGCA
GCGGGCTGAAACGCTTGTGCACACGGCTCCAGTTGACAATACCCGGCTTG
ATGACGTCGAACAGCTGGAAAATGACCAGACCATCGGCCAAATCGGAGTA
AAGCCAGTTCACGTGCGGTGCCACGCCCATTGAGTTCATCCAATTGCGGT
AGGTCTTCTCTTCGCGCGTCTCCTCAATGG
BS04113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8649-PA | 1923 | Fim-RA | 1160..1923 | 780..17 | 3795 | 99.8 | Minus |
| CG8649-PC | 1851 | Fim-RC | 1088..1851 | 780..17 | 3795 | 99.8 | Minus |
| CG8649-PD | 1926 | Fim-RD | 1163..1926 | 780..17 | 3795 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RD | 3236 | CG8649-RD | 1504..2267 | 780..17 | 3805 | 99.9 | Minus |
| Fim-RC | 3269 | CG8649-RC | 1537..2300 | 780..17 | 3805 | 99.9 | Minus |
| Fim-RA | 3387 | CG8649-RA | 1655..2418 | 780..17 | 3805 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17287256..17287534 | 475..753 | 1395 | 100 | Plus |
| X | 23542271 | X | 17286936..17287191 | 220..475 | 1280 | 100 | Plus |
| X | 23542271 | X | 17286673..17286878 | 17..222 | 1015 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-12 05:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2637 | 52..13 | 116 | 80 | Minus |
BS04113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:25 Download gff for
BS04113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-PA | 1160..1923 | 17..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:24 Download gff for
BS04113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8649-PD | 1163..1926 | 17..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:33:22 Download gff for
BS04113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 1655..2420 | 13..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:32 Download gff for
BS04113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 1655..2420 | 13..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:32 Download gff for
BS04113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17287256..17287534 | 475..753 | 100 | <- | Plus |
| X | 17287927..17287953 | 754..780 | 100 | | Plus |
| X | 17286669..17286876 | 13..220 | 98 | <- | Plus |
| X | 17286937..17287190 | 221..474 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:33:22 Download gff for
BS04113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17180702..17180909 | 13..220 | 98 | <- | Plus |
| arm_X | 17180970..17181223 | 221..474 | 100 | <- | Plus |
| arm_X | 17181289..17181567 | 475..753 | 100 | <- | Plus |
| arm_X | 17181960..17181986 | 754..780 | 100 | | Plus |
BS04113.5prime Sequence
672 bp (670 high quality bases) assembled on 2005-09-08
> BS04113.5prime
CAGTCGACATGGCAACACTTACCAAATTCACAAAAACGCTGTCCATTGAT
GAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCCAACAAAGA
TGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGCT
TCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGGGC
AAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGGC
ACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGACGG
TCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCATT
TCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCTT
CTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCTGCAACATC
TGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGAT
GGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGACACAATCGA
TGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAGA
ACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCAACATCGTA
AACATCGATGCCCACGATCTGG
BS04113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8649-PA | 1923 | Fim-RA | 1..664 | 9..672 | 3295 | 99.8 | Plus |
| CG8649-PC | 1851 | Fim-RC | 3..592 | 83..672 | 2950 | 100 | Plus |
| CG8649-PD | 1926 | Fim-RD | 79..667 | 84..672 | 2945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RA | 3387 | CG8649-RA | 496..1159 | 9..672 | 3305 | 99.8 | Plus |
| Fim-RC | 3269 | CG8649-RC | 452..1041 | 83..672 | 2950 | 100 | Plus |
| Fim-RD | 3236 | CG8649-RD | 420..1008 | 84..672 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17288449..17289039 | 672..82 | 2955 | 100 | Minus |
| X | 23542271 | X | 17301360..17301434 | 83..9 | 360 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:27:49 has no hits.
BS04113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:26 Download gff for
BS04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-PA | 1..664 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:25 Download gff for
BS04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8649-PA | 1..664 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:51 Download gff for
BS04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 488..1159 | 1..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:56:43 Download gff for
BS04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 488..1159 | 1..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:56:43 Download gff for
BS04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17288449..17289037 | 84..672 | 100 | <- | Minus |
| X | 17301360..17301442 | 1..83 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:51 Download gff for
BS04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17182482..17183070 | 84..672 | 100 | <- | Minus |
| arm_X | 17195393..17195475 | 1..83 | 95 | | Minus |
BS04113.complete Sequence
1955 bp assembled on 2010-05-12
GenBank Submission: KX799302
> BS04113.complete
GAAGTTATCAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGT
CCATTGATGAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCC
AACAAAGATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCA
GGTGGGCTTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGT
ACAAGGGCAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAG
TTCGAGGCACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATT
CAAGACGGTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGT
CGAGCATTTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAG
CTGGCCTTCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCT
GCAACATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCA
TCAAGGATGGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGAC
ACAATCGATGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGA
GTTTGAGAACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCA
ACATCGTAAACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTG
GTGCTGGGTCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACAT
CACCCTGGACAGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAAC
GTCTCGAGGATCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGG
GTCAACCATCATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTT
CCAGTCGGACATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAAA
TTGCCGGCAATGATGCTGATGTCAATCTGGATGCCCTGCGGGAATCCGAT
CTGCAGTCGCGCGCGGAGATCATGTTGCAGCAGGCCGCCAAGCTCAACTG
CCGCAGCTTCCTCACGCCACAGGATGTCGTCAACGGAGTCTACAAACTCA
ATCTAGCCTTCGTGGCTAATCTGTTCAACAACCATCCAGGATTGGACAAG
CCCGAGCAGATCGAGGGACTCGAGTCCATTGAGGAGACGCGCGAAGAGAA
GACCTACCGCAATTGGATGAACTCAATGGGCGTGGCACCGCACGTGAACT
GGCTTTACTCCGATTTGGCCGATGGTCTGGTCATTTTCCAGCTGTTCGAC
GTCATCAAGCCGGGTATTGTCAACTGGAGCCGTGTGCACAAGCGTTTCAG
CCCGCTGCGCAAGTTCATGGAAAAGCTGGAGAACTGCAACTATGCGGTGG
ATCTGGGCAAGCAGCTCAAATTCTCGCTGGTCGGAATCGCAGGCCAGGAT
CTAAACGATGGCAATGCCACGCTGACGTTGGCTCTCATCTGGCAGCTTAT
GCGTGCCTACACCCTGTCCATTCTGTCCCGCTTGGCCAACACTGGCAACC
CCATTATCGAGAAGGAGATCGTCCAGTGGGTGAATAACCGACTGTCGGAG
GCAGGCAAACAGTCGCAGCTGCGTAACTTCAACGATCCGGCCATCGCCGA
TGGCAAGATCGTGATCGATCTGATCGATGCCATCAAGGAGGGCAGCATTA
ACTACGAGTTGGTGCGCACTAGCGGAACACAGGAGGATAACCTGGCCAAT
GCCAAGTATGCCATCTCCATGGCCCGCAAGATCGGCGCCCGTGTCTACGC
CCTGCCCGAGGACATCACCGAGGTGAAGCCGAAAATGGTGATGACCGTTT
TCGCCTGCATGATGGCCCTCGACTACGTGCCCAACATGGACAGTGTGGAC
CAGAACAACCACAACAGCTCCGCCAACAACAGCAATTAGAAGCTTTCTAG
ACCAT
BS04113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RA | 1923 | CG8649-PA | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| Fim-RC | 1851 | CG8649-PC | 3..1851 | 91..1939 | 9245 | 100 | Plus |
| Fim-RD | 1926 | CG8649-PD | 79..1926 | 92..1939 | 9240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RA | 3387 | CG8649-RA | 496..2418 | 17..1939 | 9615 | 100 | Plus |
| Fim-RC | 3269 | CG8649-RC | 452..2300 | 91..1939 | 9245 | 100 | Plus |
| Fim-RD | 3236 | CG8649-RD | 420..2267 | 92..1939 | 9240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17287927..17289039 | 1202..90 | 5565 | 100 | Minus |
| X | 23542271 | X | 17287256..17287534 | 1481..1203 | 1395 | 100 | Minus |
| X | 23542271 | X | 17286936..17287191 | 1736..1481 | 1280 | 100 | Minus |
| X | 23542271 | X | 17286673..17286878 | 1939..1734 | 1030 | 100 | Minus |
| X | 23542271 | X | 17301360..17301434 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:24 has no hits.
BS04113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:06 Download gff for
BS04113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 545..2467 | 17..1939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:31 Download gff for
BS04113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 496..2418 | 17..1939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:28 Download gff for
BS04113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 496..2418 | 17..1939 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:28 Download gff for
BS04113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17286673..17286876 | 1736..1939 | 100 | <- | Minus |
| X | 17286937..17287190 | 1482..1735 | 100 | <- | Minus |
| X | 17287256..17287534 | 1203..1481 | 100 | <- | Minus |
| X | 17287927..17289037 | 92..1202 | 100 | <- | Minus |
| X | 17301360..17301434 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:31 Download gff for
BS04113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17180706..17180909 | 1736..1939 | 100 | <- | Minus |
| arm_X | 17180970..17181223 | 1482..1735 | 100 | <- | Minus |
| arm_X | 17181289..17181567 | 1203..1481 | 100 | <- | Minus |
| arm_X | 17181960..17183070 | 92..1202 | 100 | <- | Minus |
| arm_X | 17195393..17195467 | 17..91 | 100 | | Minus |
BS04113.pep Sequence
Translation from 16 to 1938
> BS04113.pep
MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL
AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS
KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP
IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT
LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC
PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV
DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT
PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW
MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF
MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL
SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI
DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI
TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSN*
BS04113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-PA | 640 | CG8649-PA | 1..640 | 1..640 | 3285 | 100 | Plus |
| Fim-PD | 641 | CG8649-PD | 17..641 | 16..640 | 3171 | 98.7 | Plus |
| Fim-PC | 616 | CG8649-PC | 2..616 | 26..640 | 3164 | 100 | Plus |
