Clone BS04114 Report

Search the DGRC for BS04114

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG6693-RA
Protein status:BS04114.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04114.3prime Sequence

910 bp (771 high quality bases) assembled on 2005-12-01

> BS04114.3prime
ATGGTCTAGAAAGCTTCTAGTTTTTGCCCTTCTCCACACGGCCCGCCTTG
ACTCCATTGAGCTTCGGTTTGGTCTCCTGCTTGGCGGCGGGCTTCTTGGA
CTTCTTTTTCTTCTTCTCGAAGGCGCTGAAGTCAACAGTGTCGGAGTCGT
CCTCGTTGCCGTACTTCTCCATCAGGCGGTCCATTAGGGAGCCAAAGTTT
GACTCGCGCTGATTGCGACGTGCCAGGATCATTTGCTGCAAATCGCCACC
GTTGTCGGCTAAATCCTGGTCGTCCTTCTCCTTCTGGCGGCGCTTCAAAC
GCTCCTTGATCACCTTGGCCTCCTTGAATTCGCGCGCGTACTTCTGGTGG
CGCTTCTTGCGCTTGGCTGCCGGCTCCTCGGTAAAGATCTTGTACTCGGG
CACCTCGCCGCTGGCAATCATATCCTGAACGATCTTCTGAATGCGCGGCT
CGTCCTCCACCTTCATGAAGGGCACATGGTTCATCAGATAGTTGATGCAA
CCCTTGCCGCCCAGATACGCCTTTTTCAGATCGGTGCGCTCCAGCTCCGA
TTCCACATACTCCTTTTCATAGTTGTTGATATCCTCCTCGGTGATGGGCT
TGAAGATTTTGCTCCACAACTCCAGCCACGACGACAGCTTGGACTCGCTC
TCATCGTCGTCGTCGATCACGCCCTGCTCGTCGTACAGCGCCCGCTTCTG
CGTGTCGGTAAGCACCTGGTAGAGCTTCGATAGCACCTTGAACTTCTCGG
TGGACTCCGCCTTCTGCTCCTCCGGCACTCGATCGGGATGAACGAGCAGC
GAGAGCTTGTGGTATGCCTTCTTCACCTCCTTCTCGCCGGCGCCCCGGGC
CAGCTCCATTAGCTTGTACACATCGCGCGTCCCAAAATACTTTTCGCACA
GCTCCAGCGT

BS04114.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PA 900 CG6693-RA 7..900 910..17 4470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RB 1250 CG6693-RB 120..1013 910..17 4470 100 Minus
CG6693-RA 1372 CG6693-RA 242..1135 910..17 4470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11220505..11221398 17..910 4470 100 Plus
Blast to na_te.dros performed 2015-02-10 18:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2061..2096 607..642 108 77.8 Plus

BS04114.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:27 Download gff for BS04114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-PA 7..900 17..910 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:27 Download gff for BS04114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-PA 7..900 17..910 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:03:20 Download gff for BS04114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 242..1142 9..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:14 Download gff for BS04114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 242..1142 9..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:14 Download gff for BS04114.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11220498..11221398 9..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:03:20 Download gff for BS04114.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7046220..7047120 9..910 99   Plus

BS04114.5prime Sequence

825 bp (795 high quality bases) assembled on 2005-11-29

> BS04114.5prime
GAAGTTATCAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTG
GGACGCGCGATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAG
AAGGAGGTGAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGA
TCGAGTGCCGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGC
TATCGAAGCTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTAC
GACGAGCAGGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTC
GTCGTGGCTGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGG
ATATCAACAACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACC
GATCTGAAAAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGAT
GAACCATGTGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGA
TCGTTCAGGATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTT
ACCGAGGAGCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCG
CGAATTCAAGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGA
AGGAGAAGGACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAA
ATGATCCTGGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAAT
GGACCGCCTGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTG
ACTTCAGCGCCTTCGAGAAGAAGAA

BS04114.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PA 900 CG6693-RA 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RB 1250 CG6693-RB 114..922 17..825 4045 100 Plus
CG6693-RA 1372 CG6693-RA 236..1044 17..825 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11220596..11221404 825..17 4045 100 Minus
Blast to na_te.dros performed 2015-02-12 20:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2061..2096 326..291 108 77.8 Minus

BS04114.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:29 Download gff for BS04114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:28 Download gff for BS04114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:49 Download gff for BS04114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 229..1044 7..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:48 Download gff for BS04114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 229..1044 7..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:48 Download gff for BS04114.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11220596..11221411 7..825 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:49 Download gff for BS04114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7046318..7047133 7..825 99   Minus

BS04114.complete Sequence

932 bp (932 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634863

> BS04114.complete
GAAGTTATCAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTG
GGACGCGCGATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAG
AAGGAGGTGAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGA
TCGAGTGCCGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGC
TATCGAAGCTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTAC
GACGAGCAGGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTC
GTCGTGGCTGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGG
ATATCAACAACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACC
GATCTGAAAAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGAT
GAACCATGTGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGA
TCGTTCAGGATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTT
ACCGAGGAGCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCG
CGAATTCAAGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGA
AGGAGAAGGACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAA
ATGATCCTGGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAAT
GGACCGCCTGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTG
ACTTCAGCGCCTTCGAGAAGAAGAAAAAGAAGTCCAAGAAGCCCGCCGCC
AAGCAGGAGACCAAACCGAAGCTCAATGGAGTCAAGGCGGGCCGTGTGGA
GAAGGGCAAAAACTAGAAGCTTTCTAGACCAT

BS04114.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RB 900 CG6693-PB 1..900 17..916 4500 100 Plus
CG6693-RA 900 CG6693-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RB 1250 CG6693-RB 114..1013 17..916 4500 100 Plus
CG6693-RA 1372 CG6693-RA 236..1135 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11220505..11221404 916..17 4500 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:26:52 has no hits.

BS04114.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:18 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:49 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 229..1142 7..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:10 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 236..1135 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:19 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 229..1142 7..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:37 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 236..1135 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:37 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11220505..11221404 17..916 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:10 Download gff for BS04114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7046227..7047126 17..916 100   Minus

BS04114.pep Sequence

Translation from 16 to 915

> BS04114.pep
MSTLELCEKYFGTRDVYKLMELARGAGEKEVKKAYHKLSLLVHPDRVPEE
QKAESTEKFKVLSKLYQVLTDTQKRALYDEQGVIDDDDESESKLSSWLEL
WSKIFKPITEEDINNYEKEYVESELERTDLKKAYLGGKGCINYLMNHVPF
MKVEDEPRIQKIVQDMIASGEVPEYKIFTEEPAAKRKKRHQKYAREFKEA
KVIKERLKRRQKEKDDQDLADNGGDLQQMILARRNQRESNFGSLMDRLME
KYGNEDDSDTVDFSAFEKKKKKSKKPAAKQETKPKLNGVKAGRVEKGKN*

BS04114.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PB 299 CG6693-PB 1..299 1..299 1540 100 Plus
CG6693-PA 299 CG6693-PA 1..299 1..299 1540 100 Plus
mrj-PA 259 CG8448-PA 3..80 15..93 171 43 Plus
mrj-PC 259 CG8448-PC 3..80 15..93 171 43 Plus
mrj-PB 259 CG8448-PB 3..80 15..93 171 43 Plus