Clone Sequence Records
BS04114.3prime Sequence
910 bp (771 high quality bases) assembled on 2005-12-01
> BS04114.3prime
ATGGTCTAGAAAGCTTCTAGTTTTTGCCCTTCTCCACACGGCCCGCCTTG
ACTCCATTGAGCTTCGGTTTGGTCTCCTGCTTGGCGGCGGGCTTCTTGGA
CTTCTTTTTCTTCTTCTCGAAGGCGCTGAAGTCAACAGTGTCGGAGTCGT
CCTCGTTGCCGTACTTCTCCATCAGGCGGTCCATTAGGGAGCCAAAGTTT
GACTCGCGCTGATTGCGACGTGCCAGGATCATTTGCTGCAAATCGCCACC
GTTGTCGGCTAAATCCTGGTCGTCCTTCTCCTTCTGGCGGCGCTTCAAAC
GCTCCTTGATCACCTTGGCCTCCTTGAATTCGCGCGCGTACTTCTGGTGG
CGCTTCTTGCGCTTGGCTGCCGGCTCCTCGGTAAAGATCTTGTACTCGGG
CACCTCGCCGCTGGCAATCATATCCTGAACGATCTTCTGAATGCGCGGCT
CGTCCTCCACCTTCATGAAGGGCACATGGTTCATCAGATAGTTGATGCAA
CCCTTGCCGCCCAGATACGCCTTTTTCAGATCGGTGCGCTCCAGCTCCGA
TTCCACATACTCCTTTTCATAGTTGTTGATATCCTCCTCGGTGATGGGCT
TGAAGATTTTGCTCCACAACTCCAGCCACGACGACAGCTTGGACTCGCTC
TCATCGTCGTCGTCGATCACGCCCTGCTCGTCGTACAGCGCCCGCTTCTG
CGTGTCGGTAAGCACCTGGTAGAGCTTCGATAGCACCTTGAACTTCTCGG
TGGACTCCGCCTTCTGCTCCTCCGGCACTCGATCGGGATGAACGAGCAGC
GAGAGCTTGTGGTATGCCTTCTTCACCTCCTTCTCGCCGGCGCCCCGGGC
CAGCTCCATTAGCTTGTACACATCGCGCGTCCCAAAATACTTTTCGCACA
GCTCCAGCGT
BS04114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-PA | 900 | CG6693-RA | 7..900 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-RB | 1250 | CG6693-RB | 120..1013 | 910..17 | 4470 | 100 | Minus |
CG6693-RA | 1372 | CG6693-RA | 242..1135 | 910..17 | 4470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11220505..11221398 | 17..910 | 4470 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2061..2096 | 607..642 | 108 | 77.8 | Plus |
BS04114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:27 Download gff for
BS04114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-PA | 7..900 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:27 Download gff for
BS04114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-PA | 7..900 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:03:20 Download gff for
BS04114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 242..1142 | 9..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:14 Download gff for
BS04114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 242..1142 | 9..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:14 Download gff for
BS04114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11220498..11221398 | 9..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:03:20 Download gff for
BS04114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7046220..7047120 | 9..910 | 99 | | Plus |
BS04114.5prime Sequence
825 bp (795 high quality bases) assembled on 2005-11-29
> BS04114.5prime
GAAGTTATCAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTG
GGACGCGCGATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAG
AAGGAGGTGAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGA
TCGAGTGCCGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGC
TATCGAAGCTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTAC
GACGAGCAGGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTC
GTCGTGGCTGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGG
ATATCAACAACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACC
GATCTGAAAAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGAT
GAACCATGTGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGA
TCGTTCAGGATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTT
ACCGAGGAGCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCG
CGAATTCAAGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGA
AGGAGAAGGACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAA
ATGATCCTGGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAAT
GGACCGCCTGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTG
ACTTCAGCGCCTTCGAGAAGAAGAA
BS04114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-PA | 900 | CG6693-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-RB | 1250 | CG6693-RB | 114..922 | 17..825 | 4045 | 100 | Plus |
CG6693-RA | 1372 | CG6693-RA | 236..1044 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11220596..11221404 | 825..17 | 4045 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2061..2096 | 326..291 | 108 | 77.8 | Minus |
BS04114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:29 Download gff for
BS04114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:28 Download gff for
BS04114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:49 Download gff for
BS04114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 229..1044 | 7..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:48 Download gff for
BS04114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 229..1044 | 7..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:48 Download gff for
BS04114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11220596..11221411 | 7..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:49 Download gff for
BS04114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7046318..7047133 | 7..825 | 99 | | Minus |
BS04114.complete Sequence
932 bp (932 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634863
> BS04114.complete
GAAGTTATCAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTG
GGACGCGCGATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAG
AAGGAGGTGAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGA
TCGAGTGCCGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGC
TATCGAAGCTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTAC
GACGAGCAGGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTC
GTCGTGGCTGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGG
ATATCAACAACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACC
GATCTGAAAAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGAT
GAACCATGTGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGA
TCGTTCAGGATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTT
ACCGAGGAGCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCG
CGAATTCAAGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGA
AGGAGAAGGACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAA
ATGATCCTGGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAAT
GGACCGCCTGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTG
ACTTCAGCGCCTTCGAGAAGAAGAAAAAGAAGTCCAAGAAGCCCGCCGCC
AAGCAGGAGACCAAACCGAAGCTCAATGGAGTCAAGGCGGGCCGTGTGGA
GAAGGGCAAAAACTAGAAGCTTTCTAGACCAT
BS04114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-RB | 900 | CG6693-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG6693-RA | 900 | CG6693-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-RB | 1250 | CG6693-RB | 114..1013 | 17..916 | 4500 | 100 | Plus |
CG6693-RA | 1372 | CG6693-RA | 236..1135 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11220505..11221404 | 916..17 | 4500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:26:52 has no hits.
BS04114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:18 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:49 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 229..1142 | 7..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:10 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 236..1135 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:19 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 229..1142 | 7..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:37 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6693-RA | 236..1135 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:37 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11220505..11221404 | 17..916 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:10 Download gff for
BS04114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7046227..7047126 | 17..916 | 100 | | Minus |
BS04114.pep Sequence
Translation from 16 to 915
> BS04114.pep
MSTLELCEKYFGTRDVYKLMELARGAGEKEVKKAYHKLSLLVHPDRVPEE
QKAESTEKFKVLSKLYQVLTDTQKRALYDEQGVIDDDDESESKLSSWLEL
WSKIFKPITEEDINNYEKEYVESELERTDLKKAYLGGKGCINYLMNHVPF
MKVEDEPRIQKIVQDMIASGEVPEYKIFTEEPAAKRKKRHQKYAREFKEA
KVIKERLKRRQKEKDDQDLADNGGDLQQMILARRNQRESNFGSLMDRLME
KYGNEDDSDTVDFSAFEKKKKKSKKPAAKQETKPKLNGVKAGRVEKGKN*
BS04114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6693-PB | 299 | CG6693-PB | 1..299 | 1..299 | 1540 | 100 | Plus |
CG6693-PA | 299 | CG6693-PA | 1..299 | 1..299 | 1540 | 100 | Plus |
mrj-PA | 259 | CG8448-PA | 3..80 | 15..93 | 171 | 43 | Plus |
mrj-PC | 259 | CG8448-PC | 3..80 | 15..93 | 171 | 43 | Plus |
mrj-PB | 259 | CG8448-PB | 3..80 | 15..93 | 171 | 43 | Plus |