Clone Sequence Records
BS04117.3prime Sequence
850 bp (699 high quality bases) assembled on 2005-12-01
> BS04117.3prime
ATGGTCTAGAAAGCTTTTACTCCTCGTCACCAAAGAGTCCTCCCAGTTCC
AAATCTTCTCCGCCAGTTCCGGTCAACTGGTGTGCTCTGAATACCGTAAA
GAATTTTCCGTCGCTTTTCGAACTCCAGGCCTGCTCATCCGACTCGGCGG
CGATGTGCCGGGCGTGCTTGGGCGGTGTGAAGTGGGTGTACGTGCAATCC
GTGTAGTCAGCCGATGGAGGGTCAACCTCACTATATTCCAGATTGTAGTG
CTCCTTCAGGAAGTCCACGACCTGTTCTTTGGAACCCAAACTGTTGAATT
GCACTCGAAGATCTCGCTTCATTTGAGCGCTATACATAAAGGTGAGGTGG
TGGTGAAAGCACTGGAAAAGCAGGTTATCCCCGGCAGCAGAGGCTATATC
TAGCCACTGTTGTACACAGGACAGTGGCGTTGTTTTACCATCTGGATAGT
TGCTATTGAAGAGAGCCGGATTAGCAAGCAAGCCTCGAGCAGCCATTACA
CCAGCTGCTCCCGTCTGTTCATGCATATCGCAAGCATCCCTATAGCTCTC
CACATTGCCGTTGACTATCAGGGGGATCTGCAGGGATTGGCGCACCTGAG
ACATGGCTGGGATGTCTAGCGTGTCCTTAGAGTGTTTTTGGGCTGGCGTC
CGACCGTGAAGAGTTAGAAAGGTGACGCCCGCGCTCTCCAACTGACGGGC
TAAATCGATAGTGCGCTGCAAGGACTCCTCTCCTCCCAGCAGACGCATCT
TCACCGAGACACTGAAATCCCCGGGCAGTGTGCGCCTCACCTCCTGAACC
ACTTGATGCACTAGCTCCGGCTGGCGCAGCATTCCGCAACCGTAACCTTT
BS04117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-PA | 1191 | CG10495-RA | 358..1191 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 445..1279 | 850..16 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063800..19064634 | 850..16 | 4175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:15:32 has no hits.
BS04117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:32 Download gff for
BS04117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-PA | 358..1191 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:32 Download gff for
BS04117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-PA | 358..1191 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:59:23 Download gff for
BS04117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 445..1289 | 7..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:33 Download gff for
BS04117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 445..1289 | 7..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:33 Download gff for
BS04117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063800..19064644 | 7..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:59:23 Download gff for
BS04117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063800..19064644 | 7..850 | 99 | | Minus |
BS04117.5prime Sequence
861 bp (768 high quality bases) assembled on 2005-11-29
> BS04117.5prime
GAAGTTATCAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACA
TCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCT
CCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAA
TGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACA
ACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAG
CCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTC
CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGAT
GTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGC
CAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCC
CGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGT
CCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTC
ACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGA
CACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCC
CCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATG
CATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGC
TAATCCGGCTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCAC
TGTCCTGTGAACAACAGTGGCTAGATATAGCCTCTGCTGCCGGGGATAAC
CTGCTTTTCCA
BS04117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-PA | 1191 | CG10495-RA | 1..845 | 17..861 | 4200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 87..932 | 16..861 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063531..19064287 | 105..861 | 3770 | 99.9 | Plus |
| 2L | 23513712 | 2L | 19063381..19063469 | 16..104 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:42:26 has no hits.
BS04117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:33 Download gff for
BS04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:33 Download gff for
BS04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:59 Download gff for
BS04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..931 | 16..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:36 Download gff for
BS04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..931 | 16..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:36 Download gff for
BS04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063381..19063469 | 16..104 | 100 | -> | Plus |
| 2L | 19063531..19064286 | 105..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:59 Download gff for
BS04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063381..19063469 | 16..104 | 100 | -> | Plus |
| arm_2L | 19063531..19064286 | 105..860 | 99 | | Plus |
BS04117.complete Sequence
1223 bp (1223 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634864
> BS04117.complete
GAAGTTATCAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACA
TCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCT
CCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAA
TGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACA
ACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAG
CCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTC
CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGAT
GTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGC
CAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCC
CGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGT
CCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTC
ACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGA
CACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCC
CCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATG
CATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGC
TAATCCGGCTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCAC
TGTCCTGTGTACAACAGTGGCTAGATATAGCCTCTGCTGCCGGGGATAAC
CTGCTTTTCCAGTGCTTTCACCACCACCTCACCTTTATGTATAGCGCTCA
AATGAAGCGAGATCTTCGAGTGCAATTCAACAGTTTGGGTTCCAAAGAAC
AGGTCGTGGACTTCCTGAAGGAGCACTACAATCTGGAATATAGTGAGGTT
GACCCTCCATCGGCTGACTACACGGATTGCACGTACACCCACTTCACACC
GCCCAAGCACGCCCGGCACATCGCCGCCGAGTCGGATGAGCAGGCCTGGA
GTTCGAAAAGCGACGGAAAATTCTTTACGGTATTCAGAGCACACCAGTTG
ACCGGAACTGGCGGAGAAGATTTGGAACTGGGAGGACTCTTTGGTGACGA
GGAGTAAAAGCTTTCTAGACCAT
BS04117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1191 | CG10495-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 87..1279 | 16..1208 | 5965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063531..19064634 | 105..1208 | 5520 | 100 | Plus |
| 2L | 23513712 | 2L | 19063381..19063469 | 16..104 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:17:02 has no hits.
BS04117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:20 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 1..1191 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:50 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 57..1259 | 16..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:06 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 88..1276 | 17..1205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:20 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 57..1259 | 16..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:52 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 88..1276 | 17..1205 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:52 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063382..19063469 | 17..104 | 100 | -> | Plus |
| 2L | 19063531..19064631 | 105..1205 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:06 Download gff for
BS04117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063382..19063469 | 17..104 | 100 | -> | Plus |
| arm_2L | 19063531..19064631 | 105..1205 | 100 | | Plus |
BS04117.pep Sequence
Translation from 16 to 1206
> BS04117.pep
MHLPQQRPHHDIAAMFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLA
FTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIY
PYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPGDFSV
SVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIP
AMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF
NSNYPDGKTTPLSCVQQWLDIASAAGDNLLFQCFHHHLTFMYSAQMKRDL
RVQFNSLGSKEQVVDFLKEHYNLEYSEVDPPSADYTDCTYTHFTPPKHAR
HIAAESDEQAWSSKSDGKFFTVFRAHQLTGTGGEDLELGGLFGDEE*
BS04117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-PA | 396 | CG10495-PA | 1..396 | 1..396 | 2081 | 100 | Plus |
| CG3645-PC | 505 | CG3645-PC | 31..386 | 26..370 | 359 | 29.2 | Plus |
| CG3645-PB | 505 | CG3645-PB | 31..386 | 26..370 | 359 | 29.2 | Plus |
| CG3645-PA | 505 | CG3645-PA | 31..386 | 26..370 | 359 | 29.2 | Plus |
| CG1434-PB | 473 | CG1434-PB | 27..280 | 26..269 | 201 | 23.6 | Plus |
