Clone Sequence Records
BS04121.3prime Sequence
893 bp (835 high quality bases) assembled on 2005-12-01
> BS04121.3prime
ATGGTCTAGAAAGCTTTTAGTATGAGGGCCTGAAGCCATTGCGTTGCGAA
AGAACCGAATCGGGGCTCTTCAGCTCCATGGCCAGTTTGTAGCCCAGTTC
AGGACGACGATCCCGACCCTCGGCCATTGCCTTGACCTGATTAGTGTGGA
CTATAACGCCATCGCTGGTGTTGACCTTCTCCTTGGTGTGCTCGATGTCG
TGGACATCTGTACCCCGGCAGCAGTCGTCGATGAGGATGGTCCTGTATCC
GGCGGACAAAGCATCCACGGCTGTGGCTCCAACGCAGACGTCATAGGCCA
ATCCGCACACATAGATATCCGTGGCGCCCTTCATTTTCAGCTGGGCATTT
AGAGTGGTGTCAGATAGCTTCTTGTTGTCCCAGAACACCGAATAAGAGTC
CACCTCGGGATTAGTGCCCTTGTACACCTTGATGCCGTGGTCGACCACTT
TGAGGTCCTTGTGCAGCTCGGCTCCCCACGAGTCCTGGACGCAGTGACGT
GGCCACAGGCGCTGCTTCATCGGCGGCGGTCCTGCGAAAATGACCGTGTC
AAACACCTTGGCGGAATCCGAGTCCAACGCGGAGGACTCGTCCATGGGGC
GCATTTTGACATTATCAATAAATGAAACGTGATCGCTGGGATGCCAGTCC
AATGAGTAGAAGACGGCATCAAAGTCCACCGTATCCAGCAGCTTGTTGAT
GGGCTCCAGTATCTCGTGTCCTTGCTGCTGTGCACTGCAATTACTTATAT
CCAAGGAACCACTTATAAAATCATTTTGTACATCAACAATGAGGAACGCG
TTCACCGGTCGCACAATCGTTTTTATCCACTGGTTCCAACAGAATTTAAA
CTCCTCCCGGTCGATGAAGCCATCGGCATTCGTATCGAAGACG
BS04121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31216-PA | 1074 | CG31216-RA | 198..1074 | 893..17 | 4360 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 355..1232 | 893..16 | 4375 | 99.9 | Minus |
Naam-RA | 1817 | CG31216-RA | 574..1451 | 893..16 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697968 | 578..135 | 2220 | 100 | Minus |
3R | 32079331 | 3R | 19697310..19697446 | 714..578 | 685 | 100 | Minus |
3R | 32079331 | 3R | 19698062..19698184 | 138..16 | 615 | 100 | Minus |
3R | 32079331 | 3R | 19696551..19696656 | 818..713 | 530 | 100 | Minus |
3R | 32079331 | 3R | 19688290..19688365 | 893..818 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:04:12 has no hits.
BS04121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:37 Download gff for
BS04121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 198..1074 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:38 Download gff for
BS04121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 198..1074 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:20:30 Download gff for
BS04121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 574..1454 | 13..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:49 Download gff for
BS04121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 574..1454 | 13..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:49 Download gff for
BS04121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19698064..19698187 | 13..136 | 99 | | Minus |
3R | 19688290..19688365 | 818..893 | 98 | -> | Minus |
3R | 19696552..19696656 | 713..817 | 100 | -> | Minus |
3R | 19697312..19697446 | 578..712 | 100 | -> | Minus |
3R | 19697526..19697966 | 137..577 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:20:30 Download gff for
BS04121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15514012..15514087 | 818..893 | 98 | -> | Minus |
arm_3R | 15522274..15522378 | 713..817 | 100 | -> | Minus |
arm_3R | 15523034..15523168 | 578..712 | 100 | -> | Minus |
arm_3R | 15523248..15523688 | 137..577 | 100 | -> | Minus |
arm_3R | 15523786..15523909 | 13..136 | 99 | | Minus |
BS04121.5prime Sequence
826 bp (746 high quality bases) assembled on 2005-11-29
> BS04121.5prime
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTT
BS04121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31216-PA | 1074 | CG31216-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 158..967 | 17..826 | 4050 | 100 | Plus |
Naam-RA | 1817 | CG31216-RA | 377..1186 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697822 | 529..826 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 19688176..19688365 | 100..289 | 950 | 100 | Plus |
3R | 32079331 | 3R | 19697310..19697446 | 393..529 | 685 | 100 | Plus |
3R | 32079331 | 3R | 19696551..19696656 | 289..394 | 530 | 100 | Plus |
3R | 32079331 | 3R | 19687212..19687297 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:41:19 has no hits.
BS04121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:39 Download gff for
BS04121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:39 Download gff for
BS04121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:57 Download gff for
BS04121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 369..1186 | 8..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:31 Download gff for
BS04121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 369..1186 | 8..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:31 Download gff for
BS04121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19687204..19687297 | 8..102 | 95 | -> | Plus |
3R | 19688179..19688365 | 103..289 | 100 | -> | Plus |
3R | 19696552..19696656 | 290..394 | 100 | -> | Plus |
3R | 19697312..19697446 | 395..529 | 100 | -> | Plus |
3R | 19697526..19697822 | 530..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:57 Download gff for
BS04121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15512926..15513019 | 8..102 | 95 | -> | Plus |
arm_3R | 15513901..15514087 | 103..289 | 100 | -> | Plus |
arm_3R | 15522274..15522378 | 290..394 | 100 | -> | Plus |
arm_3R | 15523034..15523168 | 395..529 | 100 | -> | Plus |
arm_3R | 15523248..15523544 | 530..826 | 100 | | Plus |
BS04121.complete Sequence
1106 bp (1106 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634865
> BS04121.complete
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTG
TCCGCCGGATACAGGACCATCCTCATCGACGACTGCTGCCGGGGTACAGA
TGTCCACGACATCGAGCACACCAAGGAGAAGGTCAACACCAGCGATGGCG
TTATAGTCCACACTAATCAGGTCAAGGCAATGGCCGAGGGTCGGGATCGT
CGTCCTGAACTGGGCTACAAACTGGCCATGGAGCTGAAGAGCCCCGATTC
GGTTCTTTCGCAACGCAATGGCTTCAGGCCCTCATACTAAAAGCTTTCTA
GACCAT
BS04121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1074 | CG31216-PB | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Naam-RA | 1074 | CG31216-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 158..1232 | 17..1091 | 5375 | 100 | Plus |
Naam-RA | 1817 | CG31216-RA | 377..1451 | 17..1091 | 5375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697968 | 529..972 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 19688176..19688365 | 100..289 | 950 | 100 | Plus |
3R | 32079331 | 3R | 19697310..19697446 | 393..529 | 685 | 100 | Plus |
3R | 32079331 | 3R | 19698062..19698184 | 969..1091 | 615 | 100 | Plus |
3R | 32079331 | 3R | 19696551..19696656 | 289..394 | 530 | 100 | Plus |
3R | 32079331 | 3R | 19687212..19687297 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:16:43 has no hits.
BS04121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:21 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:07 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 366..1437 | 17..1088 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:51 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 377..1448 | 17..1088 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:21 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 358..1443 | 8..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:32 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 377..1448 | 17..1088 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:32 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19687212..19687297 | 17..102 | 100 | -> | Plus |
3R | 19688179..19688365 | 103..289 | 100 | -> | Plus |
3R | 19696552..19696656 | 290..394 | 100 | -> | Plus |
3R | 19697312..19697446 | 395..529 | 100 | -> | Plus |
3R | 19697526..19697966 | 530..970 | 100 | -> | Plus |
3R | 19698064..19698181 | 971..1088 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:51 Download gff for
BS04121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15523034..15523168 | 395..529 | 100 | -> | Plus |
arm_3R | 15513901..15514087 | 103..289 | 100 | -> | Plus |
arm_3R | 15522274..15522378 | 290..394 | 100 | -> | Plus |
arm_3R | 15512934..15513019 | 17..102 | 100 | -> | Plus |
arm_3R | 15523248..15523688 | 530..970 | 100 | -> | Plus |
arm_3R | 15523786..15523903 | 971..1088 | 100 | | Plus |
BS04121.pep Sequence
Translation from 16 to 1089
> BS04121.pep
MDSPTPPIVIEDSNGSAMDACFTAFDKDSDDRLSLAEFSIICRALFRNDK
GHIYDVPPERLEQIFAVFDTNGDGFIDREEFKFCWNQWIKTIVRPVNAFL
IVDVQNDFISGSLDISNCSAQQQGHEILEPINKLLDTVDFDAVFYSLDWH
PSDHVSFIDNVKMRPMDESSALDSDSAKVFDTVIFAGPPPMKQRLWPRHC
VQDSWGAELHKDLKVVDHGIKVYKGTNPEVDSYSVFWDNKKLSDTTLNAQ
LKMKGATDIYVCGLAYDVCVGATAVDALSAGYRTILIDDCCRGTDVHDIE
HTKEKVNTSDGVIVHTNQVKAMAEGRDRRPELGYKLAMELKSPDSVLSQR
NGFRPSY*
BS04121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-PB | 357 | CG31216-PB | 1..357 | 1..357 | 1907 | 100 | Plus |
Naam-PA | 357 | CG31216-PA | 1..357 | 1..357 | 1907 | 100 | Plus |