Clone BS04121 Report

Search the DGRC for BS04121

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptNaam-RA
Protein status:BS04121.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04121.3prime Sequence

893 bp (835 high quality bases) assembled on 2005-12-01

> BS04121.3prime
ATGGTCTAGAAAGCTTTTAGTATGAGGGCCTGAAGCCATTGCGTTGCGAA
AGAACCGAATCGGGGCTCTTCAGCTCCATGGCCAGTTTGTAGCCCAGTTC
AGGACGACGATCCCGACCCTCGGCCATTGCCTTGACCTGATTAGTGTGGA
CTATAACGCCATCGCTGGTGTTGACCTTCTCCTTGGTGTGCTCGATGTCG
TGGACATCTGTACCCCGGCAGCAGTCGTCGATGAGGATGGTCCTGTATCC
GGCGGACAAAGCATCCACGGCTGTGGCTCCAACGCAGACGTCATAGGCCA
ATCCGCACACATAGATATCCGTGGCGCCCTTCATTTTCAGCTGGGCATTT
AGAGTGGTGTCAGATAGCTTCTTGTTGTCCCAGAACACCGAATAAGAGTC
CACCTCGGGATTAGTGCCCTTGTACACCTTGATGCCGTGGTCGACCACTT
TGAGGTCCTTGTGCAGCTCGGCTCCCCACGAGTCCTGGACGCAGTGACGT
GGCCACAGGCGCTGCTTCATCGGCGGCGGTCCTGCGAAAATGACCGTGTC
AAACACCTTGGCGGAATCCGAGTCCAACGCGGAGGACTCGTCCATGGGGC
GCATTTTGACATTATCAATAAATGAAACGTGATCGCTGGGATGCCAGTCC
AATGAGTAGAAGACGGCATCAAAGTCCACCGTATCCAGCAGCTTGTTGAT
GGGCTCCAGTATCTCGTGTCCTTGCTGCTGTGCACTGCAATTACTTATAT
CCAAGGAACCACTTATAAAATCATTTTGTACATCAACAATGAGGAACGCG
TTCACCGGTCGCACAATCGTTTTTATCCACTGGTTCCAACAGAATTTAAA
CTCCTCCCGGTCGATGAAGCCATCGGCATTCGTATCGAAGACG

BS04121.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31216-PA 1074 CG31216-RA 198..1074 893..17 4360 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 355..1232 893..16 4375 99.9 Minus
Naam-RA 1817 CG31216-RA 574..1451 893..16 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697968 578..135 2220 100 Minus
3R 32079331 3R 19697310..19697446 714..578 685 100 Minus
3R 32079331 3R 19698062..19698184 138..16 615 100 Minus
3R 32079331 3R 19696551..19696656 818..713 530 100 Minus
3R 32079331 3R 19688290..19688365 893..818 365 98.7 Minus
Blast to na_te.dros performed on 2015-01-30 16:04:12 has no hits.

BS04121.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:37 Download gff for BS04121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 198..1074 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:38 Download gff for BS04121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 198..1074 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:20:30 Download gff for BS04121.3prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 574..1454 13..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:49 Download gff for BS04121.3prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 574..1454 13..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:49 Download gff for BS04121.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19698064..19698187 13..136 99   Minus
3R 19688290..19688365 818..893 98 -> Minus
3R 19696552..19696656 713..817 100 -> Minus
3R 19697312..19697446 578..712 100 -> Minus
3R 19697526..19697966 137..577 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:20:30 Download gff for BS04121.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15514012..15514087 818..893 98 -> Minus
arm_3R 15522274..15522378 713..817 100 -> Minus
arm_3R 15523034..15523168 578..712 100 -> Minus
arm_3R 15523248..15523688 137..577 100 -> Minus
arm_3R 15523786..15523909 13..136 99   Minus

BS04121.5prime Sequence

826 bp (746 high quality bases) assembled on 2005-11-29

> BS04121.5prime
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTT

BS04121.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31216-PA 1074 CG31216-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 158..967 17..826 4050 100 Plus
Naam-RA 1817 CG31216-RA 377..1186 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697822 529..826 1490 100 Plus
3R 32079331 3R 19688176..19688365 100..289 950 100 Plus
3R 32079331 3R 19697310..19697446 393..529 685 100 Plus
3R 32079331 3R 19696551..19696656 289..394 530 100 Plus
3R 32079331 3R 19687212..19687297 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:41:19 has no hits.

BS04121.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:39 Download gff for BS04121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:39 Download gff for BS04121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:57 Download gff for BS04121.5prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 369..1186 8..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:31 Download gff for BS04121.5prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 369..1186 8..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:31 Download gff for BS04121.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19687204..19687297 8..102 95 -> Plus
3R 19688179..19688365 103..289 100 -> Plus
3R 19696552..19696656 290..394 100 -> Plus
3R 19697312..19697446 395..529 100 -> Plus
3R 19697526..19697822 530..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:57 Download gff for BS04121.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15512926..15513019 8..102 95 -> Plus
arm_3R 15513901..15514087 103..289 100 -> Plus
arm_3R 15522274..15522378 290..394 100 -> Plus
arm_3R 15523034..15523168 395..529 100 -> Plus
arm_3R 15523248..15523544 530..826 100   Plus

BS04121.complete Sequence

1106 bp (1106 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634865

> BS04121.complete
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTG
TCCGCCGGATACAGGACCATCCTCATCGACGACTGCTGCCGGGGTACAGA
TGTCCACGACATCGAGCACACCAAGGAGAAGGTCAACACCAGCGATGGCG
TTATAGTCCACACTAATCAGGTCAAGGCAATGGCCGAGGGTCGGGATCGT
CGTCCTGAACTGGGCTACAAACTGGCCATGGAGCTGAAGAGCCCCGATTC
GGTTCTTTCGCAACGCAATGGCTTCAGGCCCTCATACTAAAAGCTTTCTA
GACCAT

BS04121.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1074 CG31216-PB 1..1074 17..1090 5370 100 Plus
Naam-RA 1074 CG31216-PA 1..1074 17..1090 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 158..1232 17..1091 5375 100 Plus
Naam-RA 1817 CG31216-RA 377..1451 17..1091 5375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697968 529..972 2220 100 Plus
3R 32079331 3R 19688176..19688365 100..289 950 100 Plus
3R 32079331 3R 19697310..19697446 393..529 685 100 Plus
3R 32079331 3R 19698062..19698184 969..1091 615 100 Plus
3R 32079331 3R 19696551..19696656 289..394 530 100 Plus
3R 32079331 3R 19687212..19687297 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:16:43 has no hits.

BS04121.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:21 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:07 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 366..1437 17..1088 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:51 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 377..1448 17..1088 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:21 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 358..1443 8..1094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:32 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 377..1448 17..1088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:32 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19687212..19687297 17..102 100 -> Plus
3R 19688179..19688365 103..289 100 -> Plus
3R 19696552..19696656 290..394 100 -> Plus
3R 19697312..19697446 395..529 100 -> Plus
3R 19697526..19697966 530..970 100 -> Plus
3R 19698064..19698181 971..1088 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:51 Download gff for BS04121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15523034..15523168 395..529 100 -> Plus
arm_3R 15513901..15514087 103..289 100 -> Plus
arm_3R 15522274..15522378 290..394 100 -> Plus
arm_3R 15512934..15513019 17..102 100 -> Plus
arm_3R 15523248..15523688 530..970 100 -> Plus
arm_3R 15523786..15523903 971..1088 100   Plus

BS04121.pep Sequence

Translation from 16 to 1089

> BS04121.pep
MDSPTPPIVIEDSNGSAMDACFTAFDKDSDDRLSLAEFSIICRALFRNDK
GHIYDVPPERLEQIFAVFDTNGDGFIDREEFKFCWNQWIKTIVRPVNAFL
IVDVQNDFISGSLDISNCSAQQQGHEILEPINKLLDTVDFDAVFYSLDWH
PSDHVSFIDNVKMRPMDESSALDSDSAKVFDTVIFAGPPPMKQRLWPRHC
VQDSWGAELHKDLKVVDHGIKVYKGTNPEVDSYSVFWDNKKLSDTTLNAQ
LKMKGATDIYVCGLAYDVCVGATAVDALSAGYRTILIDDCCRGTDVHDIE
HTKEKVNTSDGVIVHTNQVKAMAEGRDRRPELGYKLAMELKSPDSVLSQR
NGFRPSY*

BS04121.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-PB 357 CG31216-PB 1..357 1..357 1907 100 Plus
Naam-PA 357 CG31216-PA 1..357 1..357 1907 100 Plus