Clone Sequence Records
BS04128.3prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-01
> BS04128.3prime
ATGGTCTAGAAAGCTTCTAGATGCTAAGGTCCTCCACGGACTGATTACTC
AAGGCACGCAGCTGGCACTTGAGCAGAAATGCTGTAATCCTTCGTTCTGC
CCTTCTCCGCTGCGGTTCCTTTAGTTGGGCCAGTATTTGGTCCATCTGGA
GAAAGCTGCTTCTGGGCGAGATTATTTCAGCGGGCTCTTGTTCCTCGTAG
ATGATTTCCTCTTGGATGATCTGTTCACTGGGCTCCTCGATGACCTCCTC
GATTATGAACGTACTCGACTGCTGTGGAACATCCCCATCCTCAAAAGTGT
CCCACAAAAATTGCACAGGAGTTTCCGTCTGGATGGTCGCCTCCTGTTTG
TTTGTTTTGGGTTTGGTTTTCACTTTGGAGGGCGGCTGGATCTCGGCCAA
AAATCGCAGGCGTTCCAGGTACGGCCAGGTGGATCCACTGGTGTCCGCGC
GGCGAAACTCCTTGCGAAACTGATAGTGCAGATTGTTCCAGCGCATCAGG
CAGAAGTCCACATCACAGCCCATCATCTCGGCTATGCGAGCCCAGATATC
GGTTTTCGCCTTCATGGCATCGTAGTTCGAGAGTCCAGATCTCTTATAGA
GCACAGGATTGGGTTCCACCAGATCAATTAGCTTGAAGTCGAAAGGTCTG
TTTTTCTTGTAACTGGTGCGCATGTCGACTGATAACT
BS04128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-PA | 657 | CG9948-RA | 1..657 | 673..17 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 779 | CG9948-RC | 71..728 | 674..17 | 3290 | 100 | Minus |
CG9948-RB | 1394 | CG9948-RB | 244..901 | 674..17 | 3290 | 100 | Minus |
CG9948-RA | 792 | CG9948-RA | 84..741 | 674..17 | 3290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6956453..6956947 | 511..17 | 2475 | 100 | Minus |
3L | 28110227 | 3L | 6956234..6956397 | 674..511 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:44:31 has no hits.
BS04128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:49 Download gff for
BS04128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:54 Download gff for
BS04128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:42 Download gff for
BS04128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 9..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:06 Download gff for
BS04128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 9..679 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:06 Download gff for
BS04128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956229..6956397 | 511..679 | 98 | -> | Minus |
3L | 6956454..6956951 | 9..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:42 Download gff for
BS04128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6949329..6949497 | 511..679 | 98 | -> | Minus |
arm_3L | 6949554..6950051 | 9..510 | 99 | | Minus |
BS04128.5prime Sequence
687 bp (686 high quality bases) assembled on 2005-11-29
> BS04128.5prime
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCTAGAAGCTTTCTAGACC
BS04128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-PA | 657 | CG9948-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 779 | CG9948-RC | 71..728 | 16..673 | 3290 | 100 | Plus |
CG9948-RB | 1394 | CG9948-RB | 244..901 | 16..673 | 3290 | 100 | Plus |
CG9948-RA | 792 | CG9948-RA | 84..741 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6956453..6956947 | 179..673 | 2475 | 100 | Plus |
3L | 28110227 | 3L | 6956234..6956397 | 16..179 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:43:49 has no hits.
BS04128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:50 Download gff for
BS04128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:55 Download gff for
BS04128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:13 Download gff for
BS04128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 11..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:18 Download gff for
BS04128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 11..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:18 Download gff for
BS04128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956229..6956397 | 11..179 | 98 | -> | Plus |
3L | 6956454..6956951 | 180..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:13 Download gff for
BS04128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6949329..6949497 | 11..179 | 98 | -> | Plus |
arm_3L | 6949554..6950051 | 180..681 | 99 | | Plus |
BS04128.complete Sequence
689 bp (689 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634866
> BS04128.complete
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCTAGAAGCTTTCTAGACCAT
BS04128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 657 | CG9948-PC | 1..657 | 17..673 | 3285 | 100 | Plus |
CG9948-RB | 657 | CG9948-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG9948-RA | 657 | CG9948-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 779 | CG9948-RC | 71..728 | 16..673 | 3290 | 100 | Plus |
CG9948-RB | 1394 | CG9948-RB | 244..901 | 16..673 | 3290 | 100 | Plus |
CG9948-RA | 792 | CG9948-RA | 84..741 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6956453..6956947 | 179..673 | 2475 | 100 | Plus |
3L | 28110227 | 3L | 6956234..6956397 | 16..179 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:48:22 has no hits.
BS04128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:22 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:25 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 70..736 | 11..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:02 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 85..741 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:23 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 70..736 | 11..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:33 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 85..741 | 17..673 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:33 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956235..6956397 | 17..179 | 100 | -> | Plus |
3L | 6956454..6956947 | 180..673 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:02 Download gff for
BS04128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6949335..6949497 | 17..179 | 100 | -> | Plus |
arm_3L | 6949554..6950047 | 180..673 | 100 | | Plus |
BS04128.pep Sequence
Translation from 16 to 672
> BS04128.pep
MRTSYKKNRPFDFKLIDLVEPNPVLYKRSGLSNYDAMKAKTDIWARIAEM
MGCDVDFCLMRWNNLHYQFRKEFRRADTSGSTWPYLERLRFLAEIQPPSK
VKTKPKTNKQEATIQTETPVQFLWDTFEDGDVPQQSSTFIIEEVIEEPSE
QIIQEEIIYEEQEPAEIISPRSSFLQMDQILAQLKEPQRRRAERRITAFL
LKCQLRALSNQSVEDLSI*
BS04128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-PC | 218 | CG9948-PC | 1..218 | 1..218 | 1131 | 100 | Plus |
CG9948-PB | 218 | CG9948-PB | 1..218 | 1..218 | 1131 | 100 | Plus |
CG9948-PA | 218 | CG9948-PA | 1..218 | 1..218 | 1131 | 100 | Plus |
CG6683-PA | 197 | CG6683-PA | 4..197 | 11..218 | 205 | 28.8 | Plus |