Clone BS04128 Report

Search the DGRC for BS04128

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG9948-RA
Protein status:BS04128.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04128.3prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-01

> BS04128.3prime
ATGGTCTAGAAAGCTTCTAGATGCTAAGGTCCTCCACGGACTGATTACTC
AAGGCACGCAGCTGGCACTTGAGCAGAAATGCTGTAATCCTTCGTTCTGC
CCTTCTCCGCTGCGGTTCCTTTAGTTGGGCCAGTATTTGGTCCATCTGGA
GAAAGCTGCTTCTGGGCGAGATTATTTCAGCGGGCTCTTGTTCCTCGTAG
ATGATTTCCTCTTGGATGATCTGTTCACTGGGCTCCTCGATGACCTCCTC
GATTATGAACGTACTCGACTGCTGTGGAACATCCCCATCCTCAAAAGTGT
CCCACAAAAATTGCACAGGAGTTTCCGTCTGGATGGTCGCCTCCTGTTTG
TTTGTTTTGGGTTTGGTTTTCACTTTGGAGGGCGGCTGGATCTCGGCCAA
AAATCGCAGGCGTTCCAGGTACGGCCAGGTGGATCCACTGGTGTCCGCGC
GGCGAAACTCCTTGCGAAACTGATAGTGCAGATTGTTCCAGCGCATCAGG
CAGAAGTCCACATCACAGCCCATCATCTCGGCTATGCGAGCCCAGATATC
GGTTTTCGCCTTCATGGCATCGTAGTTCGAGAGTCCAGATCTCTTATAGA
GCACAGGATTGGGTTCCACCAGATCAATTAGCTTGAAGTCGAAAGGTCTG
TTTTTCTTGTAACTGGTGCGCATGTCGACTGATAACT

BS04128.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-PA 657 CG9948-RA 1..657 673..17 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..728 674..17 3290 100 Minus
CG9948-RB 1394 CG9948-RB 244..901 674..17 3290 100 Minus
CG9948-RA 792 CG9948-RA 84..741 674..17 3290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956947 511..17 2475 100 Minus
3L 28110227 3L 6956234..6956397 674..511 820 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:44:31 has no hits.

BS04128.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:49 Download gff for BS04128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:54 Download gff for BS04128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:42 Download gff for BS04128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 9..679 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:06 Download gff for BS04128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 9..679 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:06 Download gff for BS04128.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956229..6956397 511..679 98 -> Minus
3L 6956454..6956951 9..510 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:42 Download gff for BS04128.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949329..6949497 511..679 98 -> Minus
arm_3L 6949554..6950051 9..510 99   Minus

BS04128.5prime Sequence

687 bp (686 high quality bases) assembled on 2005-11-29

> BS04128.5prime
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCTAGAAGCTTTCTAGACC

BS04128.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-PA 657 CG9948-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..728 16..673 3290 100 Plus
CG9948-RB 1394 CG9948-RB 244..901 16..673 3290 100 Plus
CG9948-RA 792 CG9948-RA 84..741 16..673 3290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956947 179..673 2475 100 Plus
3L 28110227 3L 6956234..6956397 16..179 820 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:43:49 has no hits.

BS04128.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:40:50 Download gff for BS04128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:59:55 Download gff for BS04128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:13 Download gff for BS04128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 11..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:18 Download gff for BS04128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 11..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:18 Download gff for BS04128.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956229..6956397 11..179 98 -> Plus
3L 6956454..6956951 180..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:13 Download gff for BS04128.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949329..6949497 11..179 98 -> Plus
arm_3L 6949554..6950051 180..681 99   Plus

BS04128.complete Sequence

689 bp (689 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634866

> BS04128.complete
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCTAGAAGCTTTCTAGACCAT

BS04128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 657 CG9948-PC 1..657 17..673 3285 100 Plus
CG9948-RB 657 CG9948-PB 1..657 17..673 3285 100 Plus
CG9948-RA 657 CG9948-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..728 16..673 3290 100 Plus
CG9948-RB 1394 CG9948-RB 244..901 16..673 3290 100 Plus
CG9948-RA 792 CG9948-RA 84..741 16..673 3290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956947 179..673 2475 100 Plus
3L 28110227 3L 6956234..6956397 16..179 820 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:48:22 has no hits.

BS04128.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:22 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:25 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 70..736 11..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:02 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 85..741 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:23 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 70..736 11..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:33 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 85..741 17..673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:33 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6956235..6956397 17..179 100 -> Plus
3L 6956454..6956947 180..673 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:02 Download gff for BS04128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949335..6949497 17..179 100 -> Plus
arm_3L 6949554..6950047 180..673 100   Plus

BS04128.pep Sequence

Translation from 16 to 672

> BS04128.pep
MRTSYKKNRPFDFKLIDLVEPNPVLYKRSGLSNYDAMKAKTDIWARIAEM
MGCDVDFCLMRWNNLHYQFRKEFRRADTSGSTWPYLERLRFLAEIQPPSK
VKTKPKTNKQEATIQTETPVQFLWDTFEDGDVPQQSSTFIIEEVIEEPSE
QIIQEEIIYEEQEPAEIISPRSSFLQMDQILAQLKEPQRRRAERRITAFL
LKCQLRALSNQSVEDLSI*

BS04128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-PC 218 CG9948-PC 1..218 1..218 1131 100 Plus
CG9948-PB 218 CG9948-PB 1..218 1..218 1131 100 Plus
CG9948-PA 218 CG9948-PA 1..218 1..218 1131 100 Plus
CG6683-PA 197 CG6683-PA 4..197 11..218 205 28.8 Plus