Clone Sequence Records
BS04134.3prime Sequence
906 bp (847 high quality bases) assembled on 2005-12-01
> BS04134.3prime
ATGGTCTAGAAAGCTTTCACTTGGACTCCACTTGCGATGTGGCCTTGGCC
TTATCCTCTCGAGCGCATTTGCGTATAACACTATTGAAGTACTTGTGCAG
AGCGTAGCTAACTATTCGCAGTGGTCCCAAAACTATGGCGTGCAGAAGAT
TGGTGAAGAAGCCATCCCAAGGAAGCAATGCTCCACCCAAAGTGGTGATC
AGCCAGCTTTCTGCTCCAACAGTTGAGGTGAATTTTCCCTTCAGGGCATC
CTTAAGTATAGCTTTCGCCATAACTTCCGGCTCTATGAGACCTCCTCCAC
CAGAGATTATTTTGGTTTCCCTGGGCTTTGACTTCTCCTCCTCCTCGAAT
CCGGGTGTATTCGTATCGCAGGGCATGGCCAGAGTGACGCTGACCCCGTG
CTCCCGAGACTCCATTGCAATCGTTTCAGCCATCGCTCTCAGGGCGTACT
TGGTGGCTGAGTAAGGACCGTATCCATAGATGCCAAACATAGCCGCCTGT
GAGGCAGTGATTACAATAATGCCGTCGCCGGCTTTCTTCATTTTGGGCAG
GACATAACGGGTGCAGTTATAGGTGCCGAAGAAGTTTACGTTCATCAGCT
TGTGGACATCCTGGACTGAGACCTCCTCGAACACACCGCAAATGGCCATT
CCGGCACAGTTTATTAAAGTGTATATGGGGCCGAAGCTATCTTCGATCTC
GCCAAGCACTTTGGCCACCTGGTCATAATCGCCGCTTATGTCCAGACTTC
TGTACTGGAACTTTTGATCTGGCCGCTGGCGAATCACTTCCATCAGAGCC
ACTGCTCCGCTCAGCATTTTCTCGTCGCGCGCTATCACCGTCACATTGGC
GCCTTTCATGGCGCACTCCACCGCCAGACAGAGTCCGATTCCCTTGGAGC
CGCCGG
BS04134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-PA | 1011 | CG10425-RA | 122..1011 | 906..17 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-RA | 1402 | CG10425-RA | 220..1118 | 906..8 | 4465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25261545..25262113 | 242..810 | 2845 | 100 | Plus |
| 3R | 32079331 | 3R | 25261247..25261481 | 8..242 | 1145 | 99.1 | Plus |
| 3R | 32079331 | 3R | 25262183..25262279 | 810..906 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:07:33 has no hits.
BS04134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:02 Download gff for
BS04134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-PA | 122..1011 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:11 Download gff for
BS04134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-PA | 122..1011 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:50 Download gff for
BS04134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 220..1123 | 3..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:21:12 Download gff for
BS04134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 220..1123 | 3..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:21:12 Download gff for
BS04134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25262184..25262279 | 811..906 | 100 | | Plus |
| 3R | 25261242..25261480 | 3..241 | 98 | <- | Plus |
| 3R | 25261545..25262113 | 242..810 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:50 Download gff for
BS04134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21086964..21087202 | 3..241 | 98 | <- | Plus |
| arm_3R | 21087267..21087835 | 242..810 | 100 | <- | Plus |
| arm_3R | 21087906..21088001 | 811..906 | 100 | | Plus |
BS04134.5prime Sequence
807 bp (764 high quality bases) assembled on 2005-11-29
> BS04134.5prime
GAAGTTATCAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGG
GCATTGCGGTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAG
AAACCGAGGAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAA
GGGAATCGGACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATG
TGACGGTGATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTG
ATGGAAGTGATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCT
GGACATAAGCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCG
AAGATAGCTTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCC
ATTTGCGGTGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGAT
GAACGTAAACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCA
AAATGAAGAAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCG
GCTATGTTTGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGC
CCTGAGAGCGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGG
TCAGCGTCACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAG
GAGGAGGAGAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGG
AGGTCTCATAGAGCCGGAAGTTATGGCGAAAGCTATACTTAGGGATGCCC
TGAAGGG
BS04134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-PA | 1011 | CG10425-RA | 1..791 | 17..807 | 3930 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-RA | 1402 | CG10425-RA | 98..889 | 16..807 | 3945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25261545..25262113 | 802..234 | 2830 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25262183..25262401 | 234..16 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:50:16 has no hits.
BS04134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:03 Download gff for
BS04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:13 Download gff for
BS04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:58 Download gff for
BS04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 90..889 | 7..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:25 Download gff for
BS04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 90..889 | 7..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:25 Download gff for
BS04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25262184..25262409 | 7..233 | 98 | | Minus |
| 3R | 25261540..25262113 | 234..807 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:58 Download gff for
BS04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21087262..21087835 | 234..807 | 99 | <- | Minus |
| arm_3R | 21087906..21088131 | 7..233 | 98 | | Minus |
BS04134.complete Sequence
1043 bp (1043 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634868
> BS04134.complete
GAAGTTATCAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGG
GCATTGCGGTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAG
AAACCGAGGAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAA
GGGAATCGGACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATG
TGACGGTGATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTG
ATGGAAGTGATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCT
GGACATAAGCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCG
AAGATAGCTTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCC
ATTTGCGGTGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGAT
GAACGTAAACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCA
AAATGAAGAAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCG
GCTATGTTTGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGC
CCTGAGAGCGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGG
TCAGCGTCACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAG
GAGGAGGAGAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGG
AGGTCTCATAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCC
TGAAGGGAAAATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACC
ACTTTGGGTGGAGCATTGCTTCCTTGGGATGGCTTCTTCACCAATCTTCT
GCACGCCATAGTTTTGGGACCACTGCGAATAGTTAGCTACGCTCTGCACA
AGTACTTCAATAGTGTTATACGCAAATGCGCTCGAGAGGATAAGGCCAAG
GCCACATCGCAAGTGGAGTCCAAGTGAAAGCTTTCTAGACCAT
BS04134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-RA | 1011 | CG10425-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-RA | 1402 | CG10425-RA | 98..1118 | 16..1036 | 5075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25261545..25262113 | 802..234 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 25261247..25261481 | 1036..802 | 1145 | 99.1 | Minus |
| 3R | 32079331 | 3R | 25262183..25262401 | 234..16 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:00:58 has no hits.
BS04134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:23 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:55 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 86..1119 | 7..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:21 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 99..1108 | 17..1026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:23 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 86..1119 | 7..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:01 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 99..1108 | 17..1026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:01 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25261257..25261480 | 803..1026 | 100 | <- | Minus |
| 3R | 25261545..25262113 | 234..802 | 100 | <- | Minus |
| 3R | 25262184..25262400 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:21 Download gff for
BS04134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21086979..21087202 | 803..1026 | 100 | <- | Minus |
| arm_3R | 21087267..21087835 | 234..802 | 100 | <- | Minus |
| arm_3R | 21087906..21088122 | 17..233 | 100 | | Minus |
BS04134.pep Sequence
Translation from 16 to 1026
> BS04134.pep
MELSWEIVFCVGIAVLVHVLVYVFVMAKKPRSIVGRHVVVTGGSKGIGLC
LAVECAMKGANVTVIARDEKMLSGAVALMEVIRQRPDQKFQYRSLDISGD
YDQVAKVLGEIEDSFGPIYTLINCAGMAICGVFEEVSVQDVHKLMNVNFF
GTYNCTRYVLPKMKKAGDGIIVITASQAAMFGIYGYGPYSATKYALRAMA
ETIAMESREHGVSVTLAMPCDTNTPGFEEEEKSKPRETKIISGGGGLIEP
EVMAKAILKDALKGKFTSTVGAESWLITTLGGALLPWDGFFTNLLHAIVL
GPLRIVSYALHKYFNSVIRKCAREDKAKATSQVESK*
BS04134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-PA | 336 | CG10425-PA | 1..336 | 1..336 | 1723 | 100 | Plus |
| CG15629-PA | 325 | CG15629-PA | 49..247 | 28..227 | 209 | 29.1 | Plus |
| CG7322-PC | 242 | CG7322-PC | 5..177 | 33..219 | 195 | 31.6 | Plus |
| CG7322-PB | 242 | CG7322-PB | 5..177 | 33..219 | 195 | 31.6 | Plus |
| CG7322-PA | 242 | CG7322-PA | 5..177 | 33..219 | 195 | 31.6 | Plus |
