Clone Sequence Records
BS04142.3prime Sequence
918 bp (850 high quality bases) assembled on 2005-12-01
> BS04142.3prime
ATGGTCTAGAAAGCTTTTATTGGTGTGAATAGTTAATGGGTATACCACTG
AGTCCCTGCTGCAACTTGGCGGGCTCCGTCTGTCCAAGGGCAGGATCCAA
TCCCTGCCAGGTGCGATCCTCGAAGGAGAGCCCGGTATCCGTCGTCATGA
GAGCCATTTTGGCTTGTGTAGCCAGAGCAAGCGAGGCGGGATCTCCACCT
GTTTCCAGGGAATCGTTGACCGCTCCTCGTAGCCTTCCACTCACCAAGCT
GACGTCGTTCTCTGGTATATCTGCCGCATCAAAAGGCAAGAAGCTGCGTC
CTTCCGGCAGAAGTTGTTTGAAATCCGTAACATAAGCTTCGGGGTATCTC
ATGTGCCAGGCGGGATTCAAGGCCATCTCTGCCTCGAAGACAGAGACAAT
GGGCTTATAGTACTCTTTGGAGTCGTACATATTATTGAACGGGCAACCGA
TCAGGACAAAACAATCGATTTCCAGGAAGTTAGCGAGTTTGGCTGGGTTA
ATCCTGCCCACGGAAATAAGCTGCGTCTTAATGCCTCTGCCCTTCGCCAT
TGTTTGCAGTCGCGTCACCACATCTAAGTAACCTTCAGCCGAAAGAGTGG
CCACAATGAGTCCCAGTGTTTGTGCATCCTTACACTTTTCGATGTGGAAG
TAGCGACGGCGGATGAACTGAGCCGTGAGGGGATTTTTTGAGCTGAGACT
GTCAGATGATCCATCGTAGATGTGCCATTGCACGGCAGCTGGAGCGGTCA
GAGAGAGATTAGCGAATCGCTGGTTATCGGCGCCTATGAAAATACAAATC
CTCTCAAGGTTCGTGGTCTCCCTAGTTGTCGTTGATTCTGCCTCGATGGG
CGGAAACAGTTCCAGCAGCAGTTCTTTGGGCTCCAGGATCTCGGACAGCT
GCTTCTTTAGCTTTTCCC
BS04142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-PA | 1410 | CG7265-RA | 509..1410 | 918..17 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 594..1496 | 918..16 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892406..14893308 | 16..918 | 4515 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:44:18 has no hits.
BS04142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:14 Download gff for
BS04142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 509..1410 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:29 Download gff for
BS04142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 509..1410 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:40 Download gff for
BS04142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 593..1498 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:38:05 Download gff for
BS04142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 594..1499 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:38:05 Download gff for
BS04142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892403..14893308 | 13..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:40 Download gff for
BS04142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718125..10719030 | 13..918 | 99 | | Plus |
BS04142.5prime Sequence
866 bp (753 high quality bases) assembled on 2005-11-29
> BS04142.5prime
GAAGTTATCAGTCGACATGACCTCGTCCGAAACATCAGCATCGGCTTTCT
CGAGCTCGGACACAGCCGCCCTGGAGCGTCAGGCGGAAGTGGAGCAGCCG
GTGACCTTGGAACAGATCTGGAACGAAAACCACCGGCGATCGAGCGTAGA
TTGGATTCGCAAAAGTGGTTACAAAAGGGTTTGCCTGCAATTCCCAGACG
ACTATCTGCCCCACAGCAATGCAATTAGTGTGGGCCTGAAGGAGCTACTT
GCGCCGGAGGACGTGAAAGTCTTCATCCTGGCGGACACCACATACGGAAG
CTGCTGCGTGGACGAGATTGCGGCTGCCCATGTGGATGCAGACAGTGTGA
TTCACTTCGGAAACGCATGTCGCAGTAGGGCCGCCCGCCTGCCGGTACTT
TACCTTTATCCAGAGTTGCCGCTGGATGTGAATGTTCTCCTGAGCAAGCT
GCAAGGTCTGCGCGCGGAGAGCATAGATCGACAGGTATGCGTGTACCTGG
ACATTGGGTACCAGCATGTGTACGGGGAAAAGCTAAAGAAGCAGCTGTCC
GAGATCCTGGAGCCCAAAGAACTGCTGCTGGAACTGTTTCCGCCCATCGA
GGCAGAATCAACGACAACTAGGGAGACCACGAACCTTGAGAGGATTTGTA
TTTTCATAGGCGCCGATAACCAGCGATTCGCTAATCTCTCTCTGACCGCT
CCAGCTGCCGTGCAATGGCACATCTACGATGGATCATCTGACAGTCTCAG
CTCAAAAAATCCCCTCACGGCTCAGTTCATCCGCCGTCGCTACTTCCACA
TCGAAAAGTGTAAGGATGCACAAACCCTGAGACTCATTGTGGCCACTCTT
TCGGCTGAAGGTTACT
BS04142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-PA | 1410 | CG7265-RA | 1..850 | 17..866 | 4200 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 86..935 | 17..866 | 4220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892967..14893655 | 866..178 | 3415 | 99.7 | Minus |
| 3R | 32079331 | 3R | 14893706..14893869 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:14:56 has no hits.
BS04142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:15 Download gff for
BS04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:31 Download gff for
BS04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:45 Download gff for
BS04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 82..934 | 14..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:18 Download gff for
BS04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 83..935 | 14..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:18 Download gff for
BS04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892967..14893654 | 179..866 | 99 | <- | Minus |
| 3R | 14893708..14893872 | 14..178 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:45 Download gff for
BS04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718689..10719376 | 179..866 | 99 | <- | Minus |
| arm_3R | 10719430..10719594 | 14..178 | 99 | | Minus |
BS04142.complete Sequence
1442 bp (1442 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634869
> BS04142.complete
GAAGTTATCAGTCGACATGACCTCGTCCGAAACATCAGCATCGGCTTTCT
CGAGCTCGGACACAGCCGCCCTGGAGCGTCAGGCGGAAGTGGAGCAGCCG
GTGACCTTGGAACAGATCTGGAACGAAAACCACCGGCGATCGAGCGTAGA
TTGGATTCGCAAAAGTGGTTACAAAAGGGTTTGCCTGCAATTCCCAGACG
ACTATCTGCCCCACAGCAATGCAATTAGTGTGGGCCTGAAGGAGCTACTT
GCGCCGGAGGACGTGAAAGTCTTCATCCTGGCGGACACCACATACGGAAG
CTGCTGCGTGGACGAGATTGCGGCTGCCCATGTGGATGCAGACAGTGTGA
TTCACTTCGGAAACGCATGTCGCAGTAGGGCCGCCCGCCTGCCGGTACTT
TACCTTTATCCAGAGTTGCCGCTGGATGTGAATGTTCTCCTGAGCAAGCT
GCAAGGTCTGCGCGCGGAGAGCATAGATCGACAGGTATGCGTGTACCTGG
ACATTGGGTACCAGCATGTGTACGGGGAAAAGCTAAAGAAGCAGCTGTCC
GAGATCCTGGAGCCCAAAGAACTGCTGCTGGAACTGTTTCCGCCCATCGA
GGCAGAATCAACGACAACTAGGGAGACCACGAACCTTGAGAGGATTTGTA
TTTTCATAGGCGCCGATAACCAGCGATTCGCTAATCTCTCTCTGACCGCT
CCAGCTGCCGTGCAATGGCACATCTACGATGGATCATCTGACAGTCTCAG
CTCAAAAAATCCCCTCACGGCTCAGTTCATCCGCCGTCGCTACTTCCACA
TCGAAAAGTGTAAGGATGCACAAACACTGGGACTCATTGTGGCCACTCTT
TCGGCTGAAGGTTACTTAGATGTGGTGACGCGACTGCAAACAATGGCGAA
GGGCAGAGGCATTAAGACGCAGCTTATTTCCGTGGGCAGGATTAACCCAG
CCAAACTCGCTAACTTCCTGGAAATCGATTGTTTTGTCCTGATCGGTTGC
CCGTTCAATAATATGTACGACTCCAAAGAGTACTATAAGCCCATTGTCTC
TGTCTTCGAGGCAGAGATGGCCTTGAATCCCGCCTGGCACATGAGATACC
CCGAAGCTTATGTTACGGATTTCAAACAACTTCTGCCGGAAGGACGCAGC
TTCTTGCCTTTTGATGCGGCAGATATACCAGAGAACGACGTCAGCTTGGT
GAGTGGAAGGCTACGAGGAGCGGTCAACGATTCCCTGGAAACAGGTGGAG
ATCCCGCCTCGCTTGCTCTGGCTACACAAGCCAAAATGGCTCTCATGACG
ACGGATACCGGGCTCTCCTTCGAGGATCGCACCTGGCAGGGATTGGATCC
TGCCCTTGGACAGACGGAGCCCGCCAAGTTGCAGCAGGGACTCAGTGGTA
TACCCATTAACTATTCACACCAATAAAAGCTTTCTAGACCAT
BS04142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1410 | CG7265-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 86..1496 | 17..1427 | 7055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892406..14893655 | 1427..178 | 6250 | 100 | Minus |
| 3R | 32079331 | 3R | 14893706..14893869 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:04 has no hits.
BS04142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:08 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 1..1410 | 17..1426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:36 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 82..1498 | 14..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:07 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 85..1492 | 17..1424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:08 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 82..1498 | 14..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:15 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 86..1493 | 17..1424 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:15 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892409..14893654 | 179..1424 | 100 | <- | Minus |
| 3R | 14893708..14893869 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:07 Download gff for
BS04142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718131..10719376 | 179..1424 | 100 | <- | Minus |
| arm_3R | 10719430..10719591 | 17..178 | 100 | | Minus |
BS04142.pep Sequence
Translation from 16 to 1425
> BS04142.pep
MTSSETSASAFSSSDTAALERQAEVEQPVTLEQIWNENHRRSSVDWIRKS
GYKRVCLQFPDDYLPHSNAISVGLKELLAPEDVKVFILADTTYGSCCVDE
IAAAHVDADSVIHFGNACRSRAARLPVLYLYPELPLDVNVLLSKLQGLRA
ESIDRQVCVYLDIGYQHVYGEKLKKQLSEILEPKELLLELFPPIEAESTT
TRETTNLERICIFIGADNQRFANLSLTAPAAVQWHIYDGSSDSLSSKNPL
TAQFIRRRYFHIEKCKDAQTLGLIVATLSAEGYLDVVTRLQTMAKGRGIK
TQLISVGRINPAKLANFLEIDCFVLIGCPFNNMYDSKEYYKPIVSVFEAE
MALNPAWHMRYPEAYVTDFKQLLPEGRSFLPFDAADIPENDVSLVSGRLR
GAVNDSLETGGDPASLALATQAKMALMTTDTGLSFEDRTWQGLDPALGQT
EPAKLQQGLSGIPINYSHQ*
BS04142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-PA | 469 | CG7265-PA | 1..469 | 1..469 | 2419 | 100 | Plus |
| CG11652-PC | 454 | CG11652-PC | 59..396 | 36..369 | 254 | 25.1 | Plus |
| CG11652-PB | 454 | CG11652-PB | 59..396 | 36..369 | 254 | 25.1 | Plus |
| CG11652-PA | 454 | CG11652-PA | 59..396 | 36..369 | 254 | 25.1 | Plus |
