Clone Sequence Records
BS04146.3prime Sequence
868 bp (845 high quality bases) assembled on 2005-12-01
> BS04146.3prime
ATGGTCTAGAAAGCTTTCAGGCTATTGAGGTGACGTCGATCGGCTCAGAT
TCTGTATTTTGAAAAGTGATAGTTCCTTCCGAATCAATTGACGGTCCAAT
CGACAAGCTTTCCGAATTAATTTGATCACACCTTACCCAGCTCTCATTCA
TCTCTGTCTCTGGACAGTTTACCTGATCGTCAGGCTCTTGAGTCGACGTG
GGTCGTACTAATGTGCTCAATTGGGTGCCAAACATATAGTAGTCCGGATC
AGACTCCGTATTCCGGAAACTGTTATTTGCTTGCGAATTTATACATCCAG
TCCGCATCCTTCCTAAATTAATTGGATCACATCTCACCGAATTCTCATTA
ATCTCTGTCTCTGGACGGTTGATGTTCTCATCCTGAAATCCTGACTGCTG
CTGTTCGTCCTCATCGTCTCCGATGCCGCTAAGATCAGATGACGACACGC
CTGGCGGAGCCATCGCTTCCACTTGAAAGTTCATTTGAGACAGTGAACTA
AGATTTGTGTTTGCTTGGTCCTCGTGGCTCTGCACCGCGTCATTAGAAGA
TGCATGAGCGTCTGGAGAGGATTCTGGTGCTGATAGGTTTTGACTCTTTT
TCTTTTGCCATCTATCCAATCGGCTGATGTTCTGCTTCTTAGTCTCGGCT
GCAACTATTTCTCTTCGCTGGGCCACAAACTCCTCCGGATACGGTTGGAC
CATCTTTCTGCGCACCGCTTTCATATACATTCGGTTGATGAATCTCTCAG
ACTTGTTCACAAAACGTCCTTTTGCTTCAAACCTCTTTTTGGCTTCCCAC
AGACAATTCCAAGCGGTCATATCAACCTTCACTTTGGTGCGTAGACAAAG
CTCCTTTACCTCGTCCTC
BS04146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6219-PE | 1032 | cav-RE | 181..1032 | 868..17 | 4260 | 100 | Minus |
CG6219-PD | 1014 | cav-RD | 163..1014 | 868..17 | 4260 | 100 | Minus |
CG6219-PA | 1038 | cav-RA | 187..1038 | 868..17 | 4260 | 100 | Minus |
CG6219-PB | 1014 | cav-RB | 163..1014 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RB | 1226 | CG6219-RB | 270..1121 | 868..17 | 4260 | 100 | Minus |
cav-RA | 1520 | CG6219-RA | 564..1415 | 868..17 | 4260 | 100 | Minus |
cav-RD | 1649 | CG6219-RD | 693..1544 | 868..17 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222572..24223423 | 868..17 | 4260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:24:48 has no hits.
BS04146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:24 Download gff for
BS04146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-PA | 187..1038 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:40 Download gff for
BS04146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6219-PB | 163..1014 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:41 Download gff for
BS04146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RD | 693..1544 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:13 Download gff for
BS04146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RD | 693..1544 | 17..868 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:13 Download gff for
BS04146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24222572..24223423 | 17..868 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:41 Download gff for
BS04146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20048294..20049145 | 17..868 | 100 | | Minus |
BS04146.5prime Sequence
820 bp (757 high quality bases) assembled on 2005-11-29
> BS04146.5prime
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCT
BS04146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6219-PA | 1038 | cav-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG6219-PE | 1032 | cav-RE | 13..798 | 35..820 | 3930 | 100 | Plus |
CG6219-PD | 1014 | cav-RD | 1..780 | 41..820 | 3900 | 100 | Plus |
CG6219-PB | 1014 | cav-RB | 1..780 | 41..820 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1520 | CG6219-RA | 378..1181 | 17..820 | 4020 | 100 | Plus |
cav-RD | 1649 | CG6219-RD | 523..1310 | 33..820 | 3940 | 100 | Plus |
cav-RB | 1226 | CG6219-RB | 102..887 | 35..820 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222535..24223189 | 166..820 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 24222343..24222474 | 35..166 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:47:41 has no hits.
BS04146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:25 Download gff for
BS04146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:42 Download gff for
BS04146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6219-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:42 Download gff for
BS04146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1181 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:36 Download gff for
BS04146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1181 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:36 Download gff for
BS04146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24221908..24221925 | 17..34 | 100 | -> | Plus |
3R | 24222343..24222474 | 35..166 | 100 | -> | Plus |
3R | 24222536..24223189 | 167..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:42 Download gff for
BS04146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20047630..20047647 | 17..34 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 35..166 | 100 | -> | Plus |
arm_3R | 20048258..20048911 | 167..820 | 100 | | Plus |
BS04146.complete Sequence
1070 bp (1070 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634870
> BS04146.complete
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAA
TTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGT
AAACTGTCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGTGTGATCAAA
TTAATTCGGAAAGCTTGTCGATTGGACCGTCAATTGATTCGGAAGGAACT
ATCACTTTTCAAAATACAGAATCTGAGCCGATCGACGTCACCTCAATAGC
CTGAAAGCTTTCTAGACCAT
BS04146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1038 | CG6219-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
cav-RE | 1032 | CG6219-PE | 13..1032 | 35..1054 | 5100 | 100 | Plus |
cav-RB | 1014 | CG6219-PB | 1..1014 | 41..1054 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1520 | CG6219-RA | 378..1415 | 17..1054 | 5190 | 100 | Plus |
cav-RD | 1649 | CG6219-RD | 523..1544 | 33..1054 | 5110 | 100 | Plus |
cav-RB | 1226 | CG6219-RB | 102..1121 | 35..1054 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222535..24223423 | 166..1054 | 4445 | 100 | Plus |
3R | 32079331 | 3R | 24222343..24222474 | 35..166 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:04 has no hits.
BS04146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:09 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:37 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 384..1421 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:59 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1414 | 17..1053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:10 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 384..1421 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:43 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1414 | 17..1053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:43 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24221908..24221925 | 17..34 | 100 | -> | Plus |
3R | 24222343..24222474 | 35..166 | 100 | -> | Plus |
3R | 24222536..24223422 | 167..1053 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:59 Download gff for
BS04146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20047630..20047647 | 17..34 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 35..166 | 100 | -> | Plus |
arm_3R | 20048258..20049144 | 167..1053 | 100 | | Plus |
BS04146.pep Sequence
Translation from 16 to 1053
> BS04146.pep
MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT
RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN
KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ
KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP
PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM
RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET
EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*
BS04146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-PA | 345 | CG6219-PA | 1..345 | 1..345 | 1797 | 100 | Plus |
cav-PE | 343 | CG6219-PE | 5..343 | 7..345 | 1767 | 100 | Plus |
cav-PB | 337 | CG6219-PB | 1..337 | 9..345 | 1757 | 100 | Plus |
cav-PD | 337 | CG6219-PD | 1..337 | 9..345 | 1757 | 100 | Plus |