Clone BS04146 Report

Search the DGRC for BS04146

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptcav-RA
Protein status:BS04146.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04146.3prime Sequence

868 bp (845 high quality bases) assembled on 2005-12-01

> BS04146.3prime
ATGGTCTAGAAAGCTTTCAGGCTATTGAGGTGACGTCGATCGGCTCAGAT
TCTGTATTTTGAAAAGTGATAGTTCCTTCCGAATCAATTGACGGTCCAAT
CGACAAGCTTTCCGAATTAATTTGATCACACCTTACCCAGCTCTCATTCA
TCTCTGTCTCTGGACAGTTTACCTGATCGTCAGGCTCTTGAGTCGACGTG
GGTCGTACTAATGTGCTCAATTGGGTGCCAAACATATAGTAGTCCGGATC
AGACTCCGTATTCCGGAAACTGTTATTTGCTTGCGAATTTATACATCCAG
TCCGCATCCTTCCTAAATTAATTGGATCACATCTCACCGAATTCTCATTA
ATCTCTGTCTCTGGACGGTTGATGTTCTCATCCTGAAATCCTGACTGCTG
CTGTTCGTCCTCATCGTCTCCGATGCCGCTAAGATCAGATGACGACACGC
CTGGCGGAGCCATCGCTTCCACTTGAAAGTTCATTTGAGACAGTGAACTA
AGATTTGTGTTTGCTTGGTCCTCGTGGCTCTGCACCGCGTCATTAGAAGA
TGCATGAGCGTCTGGAGAGGATTCTGGTGCTGATAGGTTTTGACTCTTTT
TCTTTTGCCATCTATCCAATCGGCTGATGTTCTGCTTCTTAGTCTCGGCT
GCAACTATTTCTCTTCGCTGGGCCACAAACTCCTCCGGATACGGTTGGAC
CATCTTTCTGCGCACCGCTTTCATATACATTCGGTTGATGAATCTCTCAG
ACTTGTTCACAAAACGTCCTTTTGCTTCAAACCTCTTTTTGGCTTCCCAC
AGACAATTCCAAGCGGTCATATCAACCTTCACTTTGGTGCGTAGACAAAG
CTCCTTTACCTCGTCCTC

BS04146.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6219-PE 1032 cav-RE 181..1032 868..17 4260 100 Minus
CG6219-PD 1014 cav-RD 163..1014 868..17 4260 100 Minus
CG6219-PA 1038 cav-RA 187..1038 868..17 4260 100 Minus
CG6219-PB 1014 cav-RB 163..1014 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RB 1226 CG6219-RB 270..1121 868..17 4260 100 Minus
cav-RA 1520 CG6219-RA 564..1415 868..17 4260 100 Minus
cav-RD 1649 CG6219-RD 693..1544 868..17 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222572..24223423 868..17 4260 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:24:48 has no hits.

BS04146.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:24 Download gff for BS04146.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-PA 187..1038 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:40 Download gff for BS04146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6219-PB 163..1014 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:41 Download gff for BS04146.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-RD 693..1544 17..868 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:13 Download gff for BS04146.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-RD 693..1544 17..868 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:13 Download gff for BS04146.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24222572..24223423 17..868 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:41 Download gff for BS04146.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20048294..20049145 17..868 100   Minus

BS04146.5prime Sequence

820 bp (757 high quality bases) assembled on 2005-11-29

> BS04146.5prime
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCT

BS04146.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6219-PA 1038 cav-RA 1..804 17..820 4020 100 Plus
CG6219-PE 1032 cav-RE 13..798 35..820 3930 100 Plus
CG6219-PD 1014 cav-RD 1..780 41..820 3900 100 Plus
CG6219-PB 1014 cav-RB 1..780 41..820 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1520 CG6219-RA 378..1181 17..820 4020 100 Plus
cav-RD 1649 CG6219-RD 523..1310 33..820 3940 100 Plus
cav-RB 1226 CG6219-RB 102..887 35..820 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222535..24223189 166..820 3275 100 Plus
3R 32079331 3R 24222343..24222474 35..166 660 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:47:41 has no hits.

BS04146.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:25 Download gff for BS04146.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:42 Download gff for BS04146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6219-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:42 Download gff for BS04146.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1181 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:36 Download gff for BS04146.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1181 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:36 Download gff for BS04146.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24221908..24221925 17..34 100 -> Plus
3R 24222343..24222474 35..166 100 -> Plus
3R 24222536..24223189 167..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:42 Download gff for BS04146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20047630..20047647 17..34 100 -> Plus
arm_3R 20048065..20048196 35..166 100 -> Plus
arm_3R 20048258..20048911 167..820 100   Plus

BS04146.complete Sequence

1070 bp (1070 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634870

> BS04146.complete
GAAGTTATCAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGA
CGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAA
ATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATG
GATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACA
CCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGAT
ATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAA
AGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGA
AAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCC
CAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCG
ATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAAT
CCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAG
GACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGT
GGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCG
GAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATC
AACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAAT
TAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACA
GTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAA
TTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGT
AAACTGTCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGTGTGATCAAA
TTAATTCGGAAAGCTTGTCGATTGGACCGTCAATTGATTCGGAAGGAACT
ATCACTTTTCAAAATACAGAATCTGAGCCGATCGACGTCACCTCAATAGC
CTGAAAGCTTTCTAGACCAT

BS04146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1038 CG6219-PA 1..1038 17..1054 5190 100 Plus
cav-RE 1032 CG6219-PE 13..1032 35..1054 5100 100 Plus
cav-RB 1014 CG6219-PB 1..1014 41..1054 5070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1520 CG6219-RA 378..1415 17..1054 5190 100 Plus
cav-RD 1649 CG6219-RD 523..1544 33..1054 5110 100 Plus
cav-RB 1226 CG6219-RB 102..1121 35..1054 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222535..24223423 166..1054 4445 100 Plus
3R 32079331 3R 24222343..24222474 35..166 660 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:04 has no hits.

BS04146.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:09 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 17..1054 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:37 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 384..1421 17..1054 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:59 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1414 17..1053 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:10 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 384..1421 17..1054 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:43 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1414 17..1053 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:43 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24221908..24221925 17..34 100 -> Plus
3R 24222343..24222474 35..166 100 -> Plus
3R 24222536..24223422 167..1053 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:59 Download gff for BS04146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20047630..20047647 17..34 100 -> Plus
arm_3R 20048065..20048196 35..166 100 -> Plus
arm_3R 20048258..20049144 167..1053 100   Plus

BS04146.pep Sequence

Translation from 16 to 1053

> BS04146.pep
MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT
RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN
KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ
KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP
PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM
RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET
EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*

BS04146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
cav-PA 345 CG6219-PA 1..345 1..345 1797 100 Plus
cav-PE 343 CG6219-PE 5..343 7..345 1767 100 Plus
cav-PB 337 CG6219-PB 1..337 9..345 1757 100 Plus
cav-PD 337 CG6219-PD 1..337 9..345 1757 100 Plus