Clone Sequence Records
BS04155.3prime Sequence
427 bp (356 high quality bases) assembled on 2005-12-01
> BS04155.3prime
ATGGTCTAGAAAGCTTCTATAGCTTGGAGCGCAGCTCCTCGATCCTGCCT
TGGGCGGATCGCTGCAGGTCCATCAGTTTCATGGCAAAGCCCATGTTGCC
CTGGATCTTGATCTTGCCCTGGAAAAAGGCCTTCTGTGGTGGCAGCTTTC
CTGTTAGCAGCTCAAAGACATCATCGTCGCTAATGATAAAGGTAACGTCA
CATTTTTGTGTTCCATTGAAGATGATCTTTCCCTTGCCCTGCTTGGCATC
AATTACCCAGAAACCGGTCTGTCCATTGGGTCCGTTGTTGACCTTAAAGC
CGTAAATGGCGCGCACCTTTTCGATCAGATTGTCCTTATCCTCCTGCATG
GCCTGCTCCAATAGTTTCAGCAGGGGCGCAACCTTAAAGCCATCCTCACT
GGTAGCAGCCTTGCCCGCAGCGGTCAG
BS04155.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17320-PA | 1635 | ScpX-RA | 1225..1635 | 427..17 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1883 | CG17320-RA | 1338..1748 | 427..17 | 2055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18833025..18833244 | 427..208 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 18833305..18833495 | 207..17 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:31:08 has no hits.
BS04155.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:37 Download gff for
BS04155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-PA | 1225..1635 | 17..427 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:59 Download gff for
BS04155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17320-PA | 1225..1635 | 17..427 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:13 Download gff for
BS04155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 1338..1754 | 8..427 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:08 Download gff for
BS04155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 1338..1754 | 8..427 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:08 Download gff for
BS04155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18833025..18833244 | 208..427 | 100 | -> | Minus |
2L | 18833305..18833501 | 8..207 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:13 Download gff for
BS04155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18833025..18833244 | 208..427 | 100 | -> | Minus |
arm_2L | 18833305..18833501 | 8..207 | 98 | | Minus |
BS04155.5prime Sequence
349 bp (345 high quality bases) assembled on 2005-12-01
> BS04155.5prime
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGA
BS04155.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17320-PA | 1635 | ScpX-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG17597-PA | 1224 | CG17597-RA | 100..333 | 116..349 | 870 | 94.8 | Plus |
CG17597-PA | 1224 | CG17597-RA | 34..92 | 50..108 | 170 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1883 | CG17320-RA | 114..446 | 17..349 | 1665 | 100 | Plus |
CG17597-RB | 1758 | CG17597-RB | 480..806 | 23..349 | 1230 | 91.7 | Plus |
CG17597-RA | 1354 | CG17597-RA | 76..402 | 23..349 | 1230 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18831721..18832010 | 60..349 | 1450 | 100 | Plus |
2L | 23513712 | 2L | 18830173..18830462 | 349..60 | 1135 | 92.8 | Minus |
2L | 23513712 | 2L | 18831342..18831386 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:06:51 has no hits.
BS04155.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:38 Download gff for
BS04155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-PA | 1..332 | 17..348 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:00 Download gff for
BS04155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17320-PA | 1..332 | 17..348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:19 Download gff for
BS04155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..445 | 17..348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:12 Download gff for
BS04155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..445 | 17..348 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:12 Download gff for
BS04155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18831723..18832009 | 62..348 | 100 | | Plus |
2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:19 Download gff for
BS04155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
arm_2L | 18831723..18832009 | 62..348 | 100 | | Plus |
BS04155.complete Sequence
1667 bp assembled on 2010-05-12
GenBank Submission: KX797775
> BS04155.complete
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGTACTTTGATCGCGCC
AATCCCATGGAGCGTCACATCACCGAGATGGGTGAGCTGGCCGAGATCGG
AGCTGGCCCAATGGCTGCCCAGATCTTCGGCAATGCCGGCAAAGAGCACA
TGAAGAAGTATGGCACTAAGCCCGAGCATTTCGGCAAGATCGCTTGGAAG
AACCACAAGCACTCCGTCAATAATCCCTACTCGCAGTTCCGCGATGAATA
CACCCTGGAGCAGATTATGAAGTCGCCCCAGGTTGTGGAGGGAGTGCTGA
CCAAGCTGCAGTGTTGTCCCACTTCCGATGGATCTGGAGCTGCCATTCTC
GCCTCCGAGGCCTTCGTGCGTCGCCACGGATTGGAAAAGCAGGCTGTCGA
AATTGTAGGCATGGAGATGGCCAGTGACCCGGCGTCCACCTTTGCCGACA
AGAGCTTGATGAAGATTGCTGGAACCGATATGACCCGTCTGGCCACCCAG
CGTCTGTTCGCAAAGAGTGGGTACAAGCCCCAGGATGTCCAGGTTGTGGA
ACTGCACGATTGCTTCTCGGCCAACGAGTTGATCACGTATGAGGCACTTG
GACTGTGTGGAGAGGGCAACGCCGGCGAGTTCATCGACGCTGGAGACAAC
ACCTACGGTGGCAAGTTCGTGGTCAACCCCAGTGGTGGTCTGATCTCGAA
GGGCCATCCTCTGGGCGCCACGGGTCTGGCACAATGTGCTGAGCTCTGCT
GGCAGCTCCGTGGATTGGCTGAGAAGCGCCAGGTGCCCAATGCTCAGTTG
GCTTTGCAGCACAATCTGGGACTGGGTGGTGCCGTTGTGGTTGCCTTGTA
TCGTCTGGGTTTCCCAGCTGCCAACAGCGTGGTTCGCAATCTGACCGCTG
CGGGCAAGGCTGCTACCAGTGAGGATGGCTTTAAGGTTGCGCCCCTGCTG
AAACTATTGGAGCAGGCCATGCAGGAGGATAAGGACAATCTGATCGAAAA
GGTGCGCGCCATTTACGGCTTTAAGGTCAACAACGGACCCAATGGACAGA
CCGGTTTCTGGGTAATTGATGCCAAGCAGGGCAAGGGAAAGATCATCTTC
AATGGAACACAAAAATGTGACGTTACCTTTATCATTAGCGACGATGATGT
CTTTGAGCTGCTAACAGGAAAGCTGCCACCACAGAAGGCCTTTTTCCAGG
GCAAGATCAAGATCCAGGGCAACATGGGCTTTGCCATGAAACTGATGGAC
CTGCAGCGATCCGCCCAAGGCAGGATCGAGGAGCTGCGCTCCAAGCTATA
GAAGCTTTCTAGACCAT
BS04155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1635 | CG17320-PA | 1..1635 | 17..1651 | 8160 | 99.9 | Plus |
CG17597-RB | 1224 | CG17597-PB | 7..1199 | 23..1215 | 5215 | 95.8 | Plus |
CG17597-RA | 1224 | CG17597-PA | 7..1199 | 23..1215 | 5215 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-RA | 1883 | CG17320-RA | 114..1748 | 17..1651 | 8160 | 99.9 | Plus |
CG17597-RB | 1758 | CG17597-RB | 480..1672 | 23..1215 | 5215 | 95.8 | Plus |
CG17597-RA | 1354 | CG17597-RA | 76..1268 | 23..1215 | 5215 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18832361..18833244 | 577..1460 | 4420 | 100 | Plus |
2L | 23513712 | 2L | 18829098..18829736 | 1215..577 | 3045 | 98.4 | Minus |
2L | 23513712 | 2L | 18831721..18832046 | 60..385 | 1630 | 100 | Plus |
2L | 23513712 | 2L | 18830143..18830462 | 379..60 | 1240 | 92.5 | Minus |
2L | 23513712 | 2L | 18833305..18833495 | 1461..1651 | 955 | 100 | Plus |
2L | 23513712 | 2L | 18832104..18832296 | 384..576 | 950 | 99.5 | Plus |
2L | 23513712 | 2L | 18829887..18830079 | 576..384 | 845 | 95.9 | Minus |
2L | 23513712 | 2L | 18831342..18831386 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:05:29 has no hits.
BS04155.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:07 Download gff for
BS04155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 158..1792 | 17..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:34 Download gff for
BS04155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..1748 | 17..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:31 Download gff for
BS04155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ScpX-RA | 114..1748 | 17..1651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:31 Download gff for
BS04155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
2L | 18831723..18832046 | 62..385 | 100 | -> | Plus |
2L | 18832106..18832296 | 386..576 | 99 | -> | Plus |
2L | 18832361..18833244 | 577..1460 | 100 | -> | Plus |
2L | 18833305..18833495 | 1461..1651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:34 Download gff for
BS04155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18831342..18831386 | 17..61 | 100 | -> | Plus |
arm_2L | 18831723..18832046 | 62..385 | 100 | -> | Plus |
arm_2L | 18832106..18832296 | 386..576 | 99 | -> | Plus |
arm_2L | 18832361..18833244 | 577..1460 | 100 | -> | Plus |
arm_2L | 18833305..18833495 | 1461..1651 | 100 | | Plus |
BS04155.pep Sequence
Translation from 16 to 1650
> BS04155.pep
MSKTRVYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQ
QAVAGYVYGDSTCGQRAIYEVGMTGIPVYNVNNNCSTGSSALYLAKQIVE
SGNADCVLALGFEKMERGSLSSKYFDRANPMERHITEMGELAEIGAGPMA
AQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQI
MKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGME
MASDPASTFADKSLMKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCF
SANELITYEALGLCGEGNAGEFIDAGDNTYGGKFVVNPSGGLISKGHPLG
ATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFP
AANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIY
GFKVNNGPNGQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLT
GKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRIEELRSKL*
BS04155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ScpX-PA | 544 | CG17320-PA | 1..544 | 1..544 | 2821 | 100 | Plus |
CG17597-PB | 407 | CG17597-PB | 1..402 | 1..402 | 2046 | 96.5 | Plus |
CG17597-PA | 407 | CG17597-PA | 1..402 | 1..402 | 2046 | 96.5 | Plus |