Clone BS04155 Report

Search the DGRC for BS04155

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptScpX-RA
Protein status:BS04155.pep: full length peptide match
Sequenced Size:1667

Clone Sequence Records

BS04155.3prime Sequence

427 bp (356 high quality bases) assembled on 2005-12-01

> BS04155.3prime
ATGGTCTAGAAAGCTTCTATAGCTTGGAGCGCAGCTCCTCGATCCTGCCT
TGGGCGGATCGCTGCAGGTCCATCAGTTTCATGGCAAAGCCCATGTTGCC
CTGGATCTTGATCTTGCCCTGGAAAAAGGCCTTCTGTGGTGGCAGCTTTC
CTGTTAGCAGCTCAAAGACATCATCGTCGCTAATGATAAAGGTAACGTCA
CATTTTTGTGTTCCATTGAAGATGATCTTTCCCTTGCCCTGCTTGGCATC
AATTACCCAGAAACCGGTCTGTCCATTGGGTCCGTTGTTGACCTTAAAGC
CGTAAATGGCGCGCACCTTTTCGATCAGATTGTCCTTATCCTCCTGCATG
GCCTGCTCCAATAGTTTCAGCAGGGGCGCAACCTTAAAGCCATCCTCACT
GGTAGCAGCCTTGCCCGCAGCGGTCAG

BS04155.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17320-PA 1635 ScpX-RA 1225..1635 427..17 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1883 CG17320-RA 1338..1748 427..17 2055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18833025..18833244 427..208 1100 100 Minus
2L 23513712 2L 18833305..18833495 207..17 955 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:31:08 has no hits.

BS04155.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:37 Download gff for BS04155.3prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-PA 1225..1635 17..427 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:00:59 Download gff for BS04155.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17320-PA 1225..1635 17..427 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:13 Download gff for BS04155.3prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1338..1754 8..427 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:08 Download gff for BS04155.3prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1338..1754 8..427 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:08 Download gff for BS04155.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18833025..18833244 208..427 100 -> Minus
2L 18833305..18833501 8..207 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:13 Download gff for BS04155.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18833025..18833244 208..427 100 -> Minus
arm_2L 18833305..18833501 8..207 98   Minus

BS04155.5prime Sequence

349 bp (345 high quality bases) assembled on 2005-12-01

> BS04155.5prime
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGA

BS04155.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17320-PA 1635 ScpX-RA 1..333 17..349 1665 100 Plus
CG17597-PA 1224 CG17597-RA 100..333 116..349 870 94.8 Plus
CG17597-PA 1224 CG17597-RA 34..92 50..108 170 91.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1883 CG17320-RA 114..446 17..349 1665 100 Plus
CG17597-RB 1758 CG17597-RB 480..806 23..349 1230 91.7 Plus
CG17597-RA 1354 CG17597-RA 76..402 23..349 1230 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18831721..18832010 60..349 1450 100 Plus
2L 23513712 2L 18830173..18830462 349..60 1135 92.8 Minus
2L 23513712 2L 18831342..18831386 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:06:51 has no hits.

BS04155.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:38 Download gff for BS04155.5prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-PA 1..332 17..348 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:00 Download gff for BS04155.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17320-PA 1..332 17..348 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:19 Download gff for BS04155.5prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..445 17..348 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:12 Download gff for BS04155.5prime
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..445 17..348 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:12 Download gff for BS04155.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18831723..18832009 62..348 100   Plus
2L 18831342..18831386 17..61 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:19 Download gff for BS04155.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18831342..18831386 17..61 100 -> Plus
arm_2L 18831723..18832009 62..348 100   Plus

BS04155.complete Sequence

1667 bp assembled on 2010-05-12

GenBank Submission: KX797775

> BS04155.complete
GAAGTTATCAGTCGACATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGTACTTTGATCGCGCC
AATCCCATGGAGCGTCACATCACCGAGATGGGTGAGCTGGCCGAGATCGG
AGCTGGCCCAATGGCTGCCCAGATCTTCGGCAATGCCGGCAAAGAGCACA
TGAAGAAGTATGGCACTAAGCCCGAGCATTTCGGCAAGATCGCTTGGAAG
AACCACAAGCACTCCGTCAATAATCCCTACTCGCAGTTCCGCGATGAATA
CACCCTGGAGCAGATTATGAAGTCGCCCCAGGTTGTGGAGGGAGTGCTGA
CCAAGCTGCAGTGTTGTCCCACTTCCGATGGATCTGGAGCTGCCATTCTC
GCCTCCGAGGCCTTCGTGCGTCGCCACGGATTGGAAAAGCAGGCTGTCGA
AATTGTAGGCATGGAGATGGCCAGTGACCCGGCGTCCACCTTTGCCGACA
AGAGCTTGATGAAGATTGCTGGAACCGATATGACCCGTCTGGCCACCCAG
CGTCTGTTCGCAAAGAGTGGGTACAAGCCCCAGGATGTCCAGGTTGTGGA
ACTGCACGATTGCTTCTCGGCCAACGAGTTGATCACGTATGAGGCACTTG
GACTGTGTGGAGAGGGCAACGCCGGCGAGTTCATCGACGCTGGAGACAAC
ACCTACGGTGGCAAGTTCGTGGTCAACCCCAGTGGTGGTCTGATCTCGAA
GGGCCATCCTCTGGGCGCCACGGGTCTGGCACAATGTGCTGAGCTCTGCT
GGCAGCTCCGTGGATTGGCTGAGAAGCGCCAGGTGCCCAATGCTCAGTTG
GCTTTGCAGCACAATCTGGGACTGGGTGGTGCCGTTGTGGTTGCCTTGTA
TCGTCTGGGTTTCCCAGCTGCCAACAGCGTGGTTCGCAATCTGACCGCTG
CGGGCAAGGCTGCTACCAGTGAGGATGGCTTTAAGGTTGCGCCCCTGCTG
AAACTATTGGAGCAGGCCATGCAGGAGGATAAGGACAATCTGATCGAAAA
GGTGCGCGCCATTTACGGCTTTAAGGTCAACAACGGACCCAATGGACAGA
CCGGTTTCTGGGTAATTGATGCCAAGCAGGGCAAGGGAAAGATCATCTTC
AATGGAACACAAAAATGTGACGTTACCTTTATCATTAGCGACGATGATGT
CTTTGAGCTGCTAACAGGAAAGCTGCCACCACAGAAGGCCTTTTTCCAGG
GCAAGATCAAGATCCAGGGCAACATGGGCTTTGCCATGAAACTGATGGAC
CTGCAGCGATCCGCCCAAGGCAGGATCGAGGAGCTGCGCTCCAAGCTATA
GAAGCTTTCTAGACCAT

BS04155.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1635 CG17320-PA 1..1635 17..1651 8160 99.9 Plus
CG17597-RB 1224 CG17597-PB 7..1199 23..1215 5215 95.8 Plus
CG17597-RA 1224 CG17597-PA 7..1199 23..1215 5215 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 1883 CG17320-RA 114..1748 17..1651 8160 99.9 Plus
CG17597-RB 1758 CG17597-RB 480..1672 23..1215 5215 95.8 Plus
CG17597-RA 1354 CG17597-RA 76..1268 23..1215 5215 95.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18832361..18833244 577..1460 4420 100 Plus
2L 23513712 2L 18829098..18829736 1215..577 3045 98.4 Minus
2L 23513712 2L 18831721..18832046 60..385 1630 100 Plus
2L 23513712 2L 18830143..18830462 379..60 1240 92.5 Minus
2L 23513712 2L 18833305..18833495 1461..1651 955 100 Plus
2L 23513712 2L 18832104..18832296 384..576 950 99.5 Plus
2L 23513712 2L 18829887..18830079 576..384 845 95.9 Minus
2L 23513712 2L 18831342..18831386 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:05:29 has no hits.

BS04155.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:07 Download gff for BS04155.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 158..1792 17..1651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:34 Download gff for BS04155.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..1748 17..1651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:31 Download gff for BS04155.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 114..1748 17..1651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:31 Download gff for BS04155.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18831342..18831386 17..61 100 -> Plus
2L 18831723..18832046 62..385 100 -> Plus
2L 18832106..18832296 386..576 99 -> Plus
2L 18832361..18833244 577..1460 100 -> Plus
2L 18833305..18833495 1461..1651 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:34 Download gff for BS04155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18831342..18831386 17..61 100 -> Plus
arm_2L 18831723..18832046 62..385 100 -> Plus
arm_2L 18832106..18832296 386..576 99 -> Plus
arm_2L 18832361..18833244 577..1460 100 -> Plus
arm_2L 18833305..18833495 1461..1651 100   Plus

BS04155.pep Sequence

Translation from 16 to 1650

> BS04155.pep
MSKTRVYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQ
QAVAGYVYGDSTCGQRAIYEVGMTGIPVYNVNNNCSTGSSALYLAKQIVE
SGNADCVLALGFEKMERGSLSSKYFDRANPMERHITEMGELAEIGAGPMA
AQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQI
MKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGME
MASDPASTFADKSLMKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCF
SANELITYEALGLCGEGNAGEFIDAGDNTYGGKFVVNPSGGLISKGHPLG
ATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFP
AANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIY
GFKVNNGPNGQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLT
GKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRIEELRSKL*

BS04155.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-PA 544 CG17320-PA 1..544 1..544 2821 100 Plus
CG17597-PB 407 CG17597-PB 1..402 1..402 2046 96.5 Plus
CG17597-PA 407 CG17597-PA 1..402 1..402 2046 96.5 Plus