Clone Sequence Records
BS04163.3prime Sequence
881 bp (777 high quality bases) assembled on 2005-12-01
> BS04163.3prime
ATGGTCTAGAAAGCTTTCAAAGGGTGGGGCAGGGCAATGGGTACTTACCA
TTTAGGACATGCACACGCACACTGGCCACATCTGCATTGGAGGGCGCACA
GGAGTATTTGCCCGAATCGGCCAGATCTGCATTCTGTATGAGCAGAAATG
AGGTTGTCACATCGCCCTTTTCGGTAATTACCGACACGCCGCCTCTTGAT
GAATCATAATTAATGACCTCCTCGTGATGATACCAAAAGATGTAGGCCGG
CGGTTCGGGGCTGAACTTTACAGTGCAAGTGAGATTTATGGTGCTGCCTT
TATCCACGTGAAGGTCAGGACCTCCCAGGATGGTGGCCGTTGGCACCACG
ACATTCAGGCGAACGAAATAGCTGCGCACTGGCTGCGTCGATATCTGGCA
CTCATACATGCCGGCGTCCCGTTTCTGGGCCCACTTTATCTGCAGTGTCC
AGTCCTCCGTGTCCTGGTGATGGGTCGCCTGGAATCGCTGGTCGCTGGTG
TAGGTGTACGAGCCGACCGTCAGTATGTGGATGTCTCGATGCCGGATCCA
GGACACCGTTTTGTTGGCCAAATTGCGCACACGGCAGCTGAGATAGGCGG
ACTTGCCCATGAGGGCGGTGACATTGCGCGGCGTCGAGGGATCGAAGTAG
GGCTCCATCCACTTGGGATGCGTGTAGGCGGCGGTGGGCGCGGTGGGCAG
GAGGAGGGCCGCCTGGCCGGGTGTGGGCGTGGTTGTCAGCAGGTCATCCA
GCGAATTGTAGCCCTCTATGGGTCCCTGAACACCGCCGTTTGTCATGTCG
CTCATCACAATCACGACGAGGAGCAGCAGCCAGGCCACGCAGAGCGGCAG
TGGATGGGCAATGGGCATGTCGACTGATAAC
BS04163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14162-PA | 852 | dpr6-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr6-RA | 2741 | CG14162-RA | 1642..2494 | 869..17 | 4265 | 100 | Minus |
| dpr6-RC | 3326 | CG14162-RC | 1642..2464 | 869..47 | 4115 | 100 | Minus |
| dpr6-RE | 2967 | CG14162-RE | 1642..2463 | 869..48 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10033182..10033427 | 799..554 | 1230 | 100 | Minus |
| 3L | 28110227 | 3L | 10036645..10036856 | 557..346 | 1060 | 100 | Minus |
| 3L | 28110227 | 3L | 10040854..10041056 | 219..17 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 10037343..10037479 | 346..210 | 670 | 99.3 | Minus |
| 3L | 28110227 | 3L | 10154762..10154968 | 346..552 | 360 | 78.3 | Plus |
| 3L | 28110227 | 3L | 10004031..10004101 | 869..799 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 10150983..10151104 | 225..346 | 295 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:12 has no hits.
BS04163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:47 Download gff for
BS04163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:10 Download gff for
BS04163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14162-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:35 Download gff for
BS04163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1636..2494 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:23 Download gff for
BS04163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1636..2494 | 17..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:23 Download gff for
BS04163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10036646..10036856 | 346..556 | 100 | -> | Minus |
| 3L | 10037344..10037471 | 218..345 | 100 | -> | Minus |
| 3L | 10040856..10041056 | 17..217 | 100 | | Minus |
| 3L | 10004025..10004101 | 799..875 | 97 | -> | Minus |
| 3L | 10033183..10033424 | 557..798 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:35 Download gff for
BS04163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9997125..9997201 | 799..875 | 97 | -> | Minus |
| arm_3L | 10026283..10026524 | 557..798 | 100 | -> | Minus |
| arm_3L | 10029746..10029956 | 346..556 | 100 | -> | Minus |
| arm_3L | 10030444..10030571 | 218..345 | 100 | -> | Minus |
| arm_3L | 10033956..10034156 | 17..217 | 100 | | Minus |
BS04163.5prime Sequence
836 bp (754 high quality bases) assembled on 2005-11-29
> BS04163.5prime
GAAGTTATCAGTCGACATGCCCATTGCCCATCCACTGCCGCTCTGCGTGG
CCTGGCTGCTGCTCCTCGTCGTGATTGTGATGAGCGACATGACAAACGGC
GGTGTTCAGGGACCCATAGAGGGCTACAATTCGCTGGATGACCTGCTGAC
AACCACGCCCACACCCGGCCAGGCGGCCCTCCTCCTGCCCACCGCGCCCA
CCGCCGCCTACACGCATCCCAAGTGGATGGAGCCCTACTTCGATCCCTCG
ACGCCGCGCAATGTCACCGCCCTCATGGGCAAGTCCGCCTATCTCAGCTG
CCGTGTGCGCAATTTGGCCAACAAAACGGTGTCCTGGATCCGGCATCGAG
ACATCCACATACTGACGGTCGGCTCGTACACCTACACCAGCGACCAGCGA
TTCCAGGCGACCCATCACCAGGACACGGAGGACTGGACACTGCAGATAAA
GTGGGCCCAGAAACGGGACGCCGGCATGTATGAGTGCCAGATATCGACGC
AGCCAGTGCGCAGCTATTTCGTTCGCCTGAATGTCGTGGTGCCAACGGCC
ACCATCCTGGGAGGTCCTGACCTTCACGTGGATAAAGGCAGCACCATAAA
TCTCACTTGCACTGTAAAGTTCAGCCCCGAACCGCCGGCCTACATCTTTT
GGTATCATCACGAGGAGGTCATTAATTATGATTCATCAAGAGGCGGCGTG
TCGGTAATTACCGAAAAGGGCGATGTGACAACCTCATTTCTGCTCATACA
GAATGCAGATCTGGCCGATTCGGGCAAATACTCCTGTGCGCCCTCCAATG
CAAATGTGGCCAGTGTGCGTGTGCATGTCCTAAATG
BS04163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14162-PA | 852 | dpr6-RA | 1..820 | 17..836 | 4075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr6-RE | 2967 | CG14162-RE | 1642..2462 | 16..836 | 4090 | 99.9 | Plus |
| dpr6-RD | 2763 | CG14162-RD | 1642..2462 | 16..836 | 4090 | 99.9 | Plus |
| dpr6-RC | 3326 | CG14162-RC | 1642..2462 | 16..836 | 4090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10033182..10033427 | 86..331 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 10036645..10036856 | 328..539 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 10040854..10041024 | 666..836 | 840 | 99.4 | Plus |
| 3L | 28110227 | 3L | 10037343..10037479 | 539..675 | 670 | 99.3 | Plus |
| 3L | 28110227 | 3L | 10154762..10154968 | 539..333 | 360 | 78.3 | Minus |
| 3L | 28110227 | 3L | 10004031..10004101 | 16..86 | 355 | 100 | Plus |
| 3L | 28110227 | 3L | 10150983..10151104 | 660..539 | 295 | 82.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:58:48 has no hits.
BS04163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:48 Download gff for
BS04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:11 Download gff for
BS04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14162-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:08 Download gff for
BS04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RC | 1636..2462 | 10..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:48 Download gff for
BS04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RC | 1636..2462 | 10..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:48 Download gff for
BS04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10004025..10004101 | 10..86 | 97 | -> | Plus |
| 3L | 10033183..10033424 | 87..328 | 100 | -> | Plus |
| 3L | 10036646..10036856 | 329..539 | 100 | -> | Plus |
| 3L | 10037344..10037471 | 540..667 | 100 | -> | Plus |
| 3L | 10040856..10041024 | 668..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:08 Download gff for
BS04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10029746..10029956 | 329..539 | 100 | -> | Plus |
| arm_3L | 10030444..10030571 | 540..667 | 100 | -> | Plus |
| arm_3L | 10033956..10034124 | 668..836 | 99 | | Plus |
| arm_3L | 9997125..9997201 | 10..86 | 97 | -> | Plus |
| arm_3L | 10026283..10026524 | 87..328 | 100 | -> | Plus |
BS04163.complete Sequence
884 bp (884 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634871
> BS04163.complete
GAAGTTATCAGTCGACATGCCCATTGCCCATCCACTGCCGCTCTGCGTGG
CCTGGCTGCTGCTCCTCGTCGTGATTGTGATGAGCGACATGACAAACGGC
GGTGTTCAGGGACCCATAGAGGGCTACAATTCGCTGGATGACCTGCTGAC
AACCACGCCCACACCCGGCCAGGCGGCCCTCCTCCTGCCCACCGCGCCCA
CCGCCGCCTACACGCATCCCAAGTGGATGGAGCCCTACTTCGATCCCTCG
ACGCCGCGCAATGTCACCGCCCTCATGGGCAAGTCCGCCTATCTCAGCTG
CCGTGTGCGCAATTTGGCCAACAAAACGGTGTCCTGGATCCGGCATCGAG
ACATCCACATACTGACGGTCGGCTCGTACACCTACACCAGCGACCAGCGA
TTCCAGGCGACCCATCACCAGGACACGGAGGACTGGACACTGCAGATAAA
GTGGGCCCAGAAACGGGACGCCGGCATGTATGAGTGCCAGATATCGACGC
AGCCAGTGCGCAGCTATTTCGTTCGCCTGAATGTCGTGGTGCCAACGGCC
ACCATCCTGGGAGGTCCTGACCTTCACGTGGATAAAGGCAGCACCATAAA
TCTCACTTGCACTGTAAAGTTCAGCCCCGAACCGCCGGCCTACATCTTTT
GGTATCATCACGAGGAGGTCATTAATTATGATTCATCAAGAGGCGGCGTG
TCGGTAATTACCGAAAAGGGCGATGTGACAACCTCATTTCTGCTCATACA
GAATGCAGATCTGGCCGATTCGGGCAAATACTCCTGTGCGCCCTCCAATG
CAGATGTGGCCAGTGTGCGTGTGCATGTCCTAAATGGTAAGTACCCATTG
CCCTGCCCCACCCTTTGAAAGCTTTCTAGACCAT
BS04163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr6-RA | 852 | CG14162-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
| dpr6-RC | 1173 | CG14162-PC | 1..822 | 17..838 | 4110 | 100 | Plus |
| dpr6-RE | 852 | CG14162-PE | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr6-RA | 2741 | CG14162-RA | 1642..2494 | 16..868 | 4265 | 100 | Plus |
| dpr6-RC | 3326 | CG14162-RC | 1642..2464 | 16..838 | 4115 | 100 | Plus |
| dpr6-RE | 2967 | CG14162-RE | 1642..2463 | 16..837 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10033182..10033427 | 86..331 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 10036645..10036856 | 328..539 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 10040854..10041056 | 666..868 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 10037343..10037479 | 539..675 | 670 | 99.3 | Plus |
| 3L | 28110227 | 3L | 10154762..10154968 | 539..333 | 360 | 78.3 | Minus |
| 3L | 28110227 | 3L | 10004031..10004101 | 16..86 | 355 | 100 | Plus |
| 3L | 28110227 | 3L | 10150983..10151104 | 660..539 | 295 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:15:54 has no hits.
BS04163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:11 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:58 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1675..2525 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:46 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1643..2493 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:11 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1668..2526 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:16 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr6-RA | 1643..2493 | 17..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:16 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10037344..10037471 | 540..667 | 100 | -> | Plus |
| 3L | 10040856..10041055 | 668..867 | 100 | | Plus |
| 3L | 10004032..10004101 | 17..86 | 100 | -> | Plus |
| 3L | 10033183..10033424 | 87..328 | 100 | -> | Plus |
| 3L | 10036646..10036856 | 329..539 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:46 Download gff for
BS04163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10030444..10030571 | 540..667 | 100 | -> | Plus |
| arm_3L | 10033956..10034155 | 668..867 | 100 | | Plus |
| arm_3L | 9997132..9997201 | 17..86 | 100 | -> | Plus |
| arm_3L | 10026283..10026524 | 87..328 | 100 | -> | Plus |
| arm_3L | 10029746..10029956 | 329..539 | 100 | -> | Plus |
BS04163.pep Sequence
Translation from 16 to 867
> BS04163.pep
MPIAHPLPLCVAWLLLLVVIVMSDMTNGGVQGPIEGYNSLDDLLTTTPTP
GQAALLLPTAPTAAYTHPKWMEPYFDPSTPRNVTALMGKSAYLSCRVRNL
ANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKR
DAGMYECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTV
KFSPEPPAYIFWYHHEEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLA
DSGKYSCAPSNADVASVRVHVLNGKYPLPCPTL*
BS04163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr6-PA | 283 | CG14162-PA | 1..283 | 1..283 | 1519 | 100 | Plus |
| dpr6-PC | 390 | CG14162-PC | 1..277 | 1..277 | 1474 | 99.3 | Plus |
| dpr6-PE | 283 | CG14162-PE | 1..274 | 1..274 | 1464 | 100 | Plus |
| dpr6-PD | 286 | CG14162-PD | 1..277 | 1..277 | 1463 | 98.9 | Plus |
| dpr6-PF | 396 | CG14162-PF | 1..273 | 1..273 | 1458 | 100 | Plus |
