Clone Sequence Records
BS04166.3prime Sequence
898 bp (826 high quality bases) assembled on 2005-12-01
> BS04166.3prime
ATGGTCTAGAAAGCTTTTAAAAGTTAAATGAGTTCATCGTTAGCCTATCG
GCGTGTGGATCGAAATTGTATTGTGCGCCGTCGGAGGTCGGTGCCATGTT
AGTCTGTTCGCCCTCATCAGTGAAGTATTGATCGATGATCTCATAAGCTA
GTTTGTAGATTTCAACGTTTTCGTGGCTCTGCAGACGCTCGATCTTGGCC
AGGCCCTCGCATTCCTCAATGCAGTTGGCCACCGCCTCAACATGAGAATC
GGCCACTTTTAACATATTGTTCAGACCATCCAAAACAACATTTATAACTT
GCGTATCCTGGCATGAAAGGAGGTCACAGAATGGCGGAATGACGCCCTCC
TTGATCAAGGTGAAGACCTGTTCGCGGTTGCCGCTAATGGTCAGATTGCT
GATGGCCCAGGCAGCCTCCTTCTGTGTCTGGAACTCGCCCTTGCTTAGGT
TCTCGATAATTTTGGGCAGGAGACCCACGTTAATAACGGCCTGCACCTGC
GATTGATTTCCAGCGGTTATATTGGAAAGGAACCAAACCGCCTCCTTTCG
GATCTTCTCCTTGGGATGCGAGAGCAGGCCCGGGAAGTAGGAGAGCGCGT
CGTAGTTGAGCACAACCTGTGTCTGCTCATCCGATCCAGTCACAATATTG
CCAACAGCCCGCAGTGCGGCTGTCTGTACCTTGACCTCGCTGTTGCCCAG
CAGTGGTATCAGCTTGGGTACAACTCCACTTTCAATGACCATCTGGATCT
GATCGTTGCCACCGTCAGTCAAATAGCTGATGGCCCAGACCGTGTCCACC
AGGATGTTCGTGTCGGTGTGATGAATGAGCACATTGAGTGCGGGCAGGAT
CTCATGAATGGTGGCTGTCGGGGGAGCCGGATCCTTGTTGCGGCACAA
BS04166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9423-PA | 1545 | Kap-alpha3-RA | 664..1545 | 898..17 | 4410 | 100 | Minus |
| CG9423-PB | 1545 | Kap-alpha3-RB | 664..1545 | 898..17 | 4410 | 100 | Minus |
| CG9423-PC | 1545 | Kap-alpha3-RC | 664..1545 | 898..17 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 870..1751 | 898..17 | 4410 | 100 | Minus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 792..1673 | 898..17 | 4410 | 100 | Minus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 857..1738 | 898..17 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9575875..9576485 | 288..898 | 3055 | 100 | Plus |
| 3R | 32079331 | 3R | 9575635..9575817 | 112..294 | 900 | 99.5 | Plus |
| 3R | 32079331 | 3R | 9575474..9575571 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:47:59 has no hits.
BS04166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:51 Download gff for
BS04166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PA | 666..1545 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:15 Download gff for
BS04166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PC | 666..1545 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:34:02 Download gff for
BS04166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 859..1744 | 10..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:10 Download gff for
BS04166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 859..1744 | 10..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:10 Download gff for
BS04166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9575468..9575569 | 10..112 | 97 | <- | Plus |
| 3R | 9575636..9575812 | 113..289 | 100 | <- | Plus |
| 3R | 9575877..9576483 | 290..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:34:02 Download gff for
BS04166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5401190..5401291 | 10..112 | 97 | <- | Plus |
| arm_3R | 5401358..5401534 | 113..289 | 100 | <- | Plus |
| arm_3R | 5401599..5402205 | 290..896 | 100 | | Plus |
BS04166.5prime Sequence
816 bp (759 high quality bases) assembled on 2005-11-29
> BS04166.5prime
GAAGTTATCAGTCGACATGACGTCTATGGAGCAAAATCGTTTACAAAACT
TCAAAAACAAAGGGAAAGACCAGGATGAAATGCGACGTCGGAGAAATGAA
GTCACCGTTGAGCTGAGGAAGAACAAGCGCGAAGAGACCATTCTCAAGCG
TCGCAATGTGCCCAATTTGGACTCGAACACAGATGAGGAGGAGCAGTTGT
CCTCGTCCATTGACCTGAAGAAGCTGGCAAAGGCAGCCGCAGACGCCACC
AAGCCGGAACAGCAACTGGCCGCTGTTCAGGCTGCCCGCAAGCTGCTGTC
GTCGGACAAGAATCCACCCATCAACGATCTGATCCAAAGCGACATTCTGC
CCATCCTGGTGGAGTGCCTCAAACAACACAATCACACAATGCTCCAGTTC
GAGGCCGCCTGGGCCCTGACCAACATTGCCTCTGGCACATCGGCTCAGAC
CAACGAGGTTGTTGCCGCCGGTGCCGTGCCGCTCTTCCTTCAACTTCTCA
ACTCGCCCGCTCCCAATGTTTGCGAACAAGCCGTGTGGGCCCTGGGCAAC
ATCATAGGCGATGGTCCTTTGCTCCGCGATTTTGTCATTAAGCACGGAGT
CGTGCAGCCACTTTTGTCGTTCATCAAGCCAGACATCCCCATCACATTCT
TGCGCAATGTAACATGGGTTATTGTGAATTTGTGCCGCAACAAGGATCCG
GCTCCCCCGACAGCCACCATTCATGAGATCCTGCCCGCACTCAATGTGCT
CATTCATCACACCGACACGAACATCCTGGTGGACACGGTCTGGGCCATCA
GCTATTTGACTGACGG
BS04166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9423-PA | 1545 | Kap-alpha3-RA | 1..800 | 17..816 | 4000 | 100 | Plus |
| CG9423-PB | 1545 | Kap-alpha3-RB | 1..800 | 17..816 | 4000 | 100 | Plus |
| CG9423-PC | 1545 | Kap-alpha3-RC | 1..800 | 17..816 | 4000 | 100 | Plus |
| CG4799-PA | 1569 | Pen-RA | 380..434 | 387..441 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 197..1006 | 7..816 | 4005 | 99.6 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 119..928 | 7..816 | 4005 | 99.6 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 184..993 | 7..816 | 4005 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9576766..9577148 | 459..77 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 9576349..9576709 | 816..456 | 1805 | 100 | Minus |
| 3R | 32079331 | 3R | 9577207..9577277 | 77..7 | 310 | 95.8 | Minus |
| 2L | 23513712 | 2L | 10058201..10058255 | 387..441 | 200 | 90.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:18:12 has no hits.
BS04166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:41:52 Download gff for
BS04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PA | 1..800 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:17 Download gff for
BS04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PC | 1..800 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:58 Download gff for
BS04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 184..993 | 7..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:34 Download gff for
BS04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 184..993 | 7..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:34 Download gff for
BS04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9576349..9576707 | 458..816 | 100 | <- | Minus |
| 3R | 9576768..9577148 | 77..457 | 100 | <- | Minus |
| 3R | 9577208..9577277 | 7..76 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:58 Download gff for
BS04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5402071..5402429 | 458..816 | 100 | <- | Minus |
| arm_3R | 5402490..5402870 | 77..457 | 100 | <- | Minus |
| arm_3R | 5402930..5402999 | 7..76 | 95 | | Minus |
BS04166.complete Sequence
1577 bp (1577 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634872
> BS04166.complete
GAAGTTATCAGTCGACATGACGTCTATGGAGCAAAATCGTTTACAAAACT
TCAAAAACAAAGGGAAAGACCAGGATGAAATGCGACGTCGGAGAAATGAA
GTCACCGTTGAGCTGAGGAAGAACAAGCGCGAAGAGACCATTCTCAAGCG
TCGCAATGTGCCCAATTTGGACTCGAACACAGATGAGGAGGAGCAGTTGT
CCTCGTCCATTGACCTGAAGAAGCTGGCAAAGGCAGCCGCAGACGCCACC
AAGCCGGAACAGCAACTGGCCGCTGTTCAGGCTGCCCGCAAGCTGCTGTC
GTCGGACAAGAATCCACCCATCAACGATCTGATCCAAAGCGACATTCTGC
CCATCCTGGTGGAGTGCCTCAAACAACACAATCACACAATGCTCCAGTTC
GAGGCCGCCTGGGCCCTGACCAACATTGCCTCTGGCACATCGGCTCAGAC
CAACGAGGTTGTTGCCGCCGGTGCCGTGCCGCTCTTCCTTCAACTTCTCA
ACTCGCCCGCTCCCAATGTTTGCGAACAAGCCGTGTGGGCCCTGGGCAAC
ATCATAGGCGATGGTCCTTTGCTCCGCGATTTTGTCATTAAGCACGGAGT
CGTGCAGCCACTTTTGTCGTTCATCAAGCCAGACATCCCCATCACATTCT
TGCGCAATGTAACATGGGTTATTGTGAATTTGTGCCGCAACAAGGATCCG
GCTCCCCCGACAGCCACCATTCATGAGATCCTGCCCGCACTCAATGTGCT
CATTCATCACACCGACACGAACATCCTGGTGGACACGGTCTGGGCCATCA
GCTATTTGACTGACGGTGGCAACGATCAGATCCAGATGGTCATTGAAAGT
GGAGTTGTACCCAAGCTGATACCACTGCTGGGCAACAGCGAGGTCAAGGT
ACAGACAGCCGCACTGCGGGCTGTTGGCAATATTGTGACTGGATCGGATG
AGCAGACACAGGTTGTGCTCAACTACGACGCGCTCTCCTACTTCCCGGGC
CTGCTCTCGCATCCCAAGGAGAAGATCCGAAAGGAGGCGGTTTGGTTCCT
TTCCAATATAACCGCTGGAAATCAATCGCAGGTGCAGGCCGTTATTAACG
TGGGTCTCCTGCCCAAAATTATCGAGAACCTAAGCAAGGGCGAGTTCCAG
ACACAGAAGGAGGCTGCCTGGGCCATCAGCAATCTGACCATTAGCGGCAA
CCGCGAACAGGTCTTCACCTTGATCAAGGAGGGCGTCATTCCGCCATTCT
GTGACCTCCTTTCATGCCAGGATACGCAAGTTATAAATGTTGTTTTGGAT
GGTCTGAACAATATGTTAAAAGTGGCCGATTCTCATGTTGAGGCGGTGGC
CAACTGCATTGAGGAATGCGAGGGCCTGGCCAAGATCGAGCGTCTGCAGA
GCCACGAAAACGTTGAAATCTACAAACTAGCTTATGAGATCATCGATCAA
TACTTCACTGATGAGGGCGAACAGACTAACATGGCACCGACCTCCGACGG
CGCACAATACAATTTCGATCCACACGCCGATAGGCTAACGATGAACTCAT
TTAACTTTTAAAAGCTTTCTAGACCAT
BS04166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 1545 | CG9423-PD | 1..1545 | 17..1561 | 7725 | 100 | Plus |
| Kap-alpha3-RC | 1545 | CG9423-PC | 1..1545 | 17..1561 | 7725 | 100 | Plus |
| Kap-alpha3-RB | 1545 | CG9423-PB | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 197..1751 | 7..1561 | 7730 | 99.8 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 119..1673 | 7..1561 | 7730 | 99.8 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 184..1738 | 7..1561 | 7730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9575875..9576709 | 1290..456 | 4175 | 100 | Minus |
| 3R | 32079331 | 3R | 9576766..9577148 | 459..77 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 9575635..9575817 | 1466..1284 | 900 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9575474..9575571 | 1561..1464 | 490 | 100 | Minus |
| 3R | 32079331 | 3R | 9577207..9577277 | 77..7 | 310 | 95.8 | Minus |
| 2L | 23513712 | 2L | 10058201..10058255 | 387..441 | 200 | 90.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:53:41 has no hits.
BS04166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:42 Download gff for
BS04166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RC | 170..1730 | 7..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:53 Download gff for
BS04166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 194..1736 | 17..1559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:12 Download gff for
BS04166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RC | 170..1730 | 7..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:26 Download gff for
BS04166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 194..1736 | 17..1559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:26 Download gff for
BS04166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9575476..9575569 | 1466..1559 | 100 | <- | Minus |
| 3R | 9575636..9575812 | 1289..1465 | 100 | <- | Minus |
| 3R | 9575877..9576707 | 458..1288 | 100 | <- | Minus |
| 3R | 9576768..9577148 | 77..457 | 100 | <- | Minus |
| 3R | 9577208..9577267 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:53 Download gff for
BS04166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5401198..5401291 | 1466..1559 | 100 | <- | Minus |
| arm_3R | 5401358..5401534 | 1289..1465 | 100 | <- | Minus |
| arm_3R | 5401599..5402429 | 458..1288 | 100 | <- | Minus |
| arm_3R | 5402490..5402870 | 77..457 | 100 | <- | Minus |
| arm_3R | 5402930..5402989 | 17..76 | 100 | | Minus |
BS04166.pep Sequence
Translation from 16 to 1560
> BS04166.pep
MTSMEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPN
LDSNTDEEEQLSSSIDLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNP
PINDLIQSDILPILVECLKQHNHTMLQFEAAWALTNIASGTSAQTNEVVA
AGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQPLL
SFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTD
TNILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAAL
RAVGNIVTGSDEQTQVVLNYDALSYFPGLLSHPKEKIRKEAVWFLSNITA
GNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLTISGNREQVF
TLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEE
CEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNF
DPHADRLTMNSFNF*
BS04166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-PD | 514 | CG9423-PD | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha3-PC | 514 | CG9423-PC | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha3-PB | 514 | CG9423-PB | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha3-PA | 514 | CG9423-PA | 1..514 | 1..514 | 2630 | 100 | Plus |
| Kap-alpha1-PA | 543 | CG8548-PA | 1..543 | 4..514 | 1185 | 45.9 | Plus |
