Clone BS04175 Report

Search the DGRC for BS04175

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG11486-RG
Protein status:BS04175.pep: full length peptide match
Sequenced Size:2405

Clone Sequence Records

BS04175.complete Sequence

2405 bp assembled on 2009-12-07

GenBank Submission: KX793930

> BS04175.complete
GAAGTTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGT
TTTCAGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGA
ATACCGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGC
CACACCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGG
ATTCGCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTC
ATTCCAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAA
CGCGCCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAG
CCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTT
CCCTCCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAAC
GGCCAACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCG
CCTCTGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAA
CAGCATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCC
CATTGCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCA
GCAGCATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGC
CAGGAATCACCAACGGCAGCCATGATTTCGGGCGCAGGGCCAGGTGAGAA
GTCGCCACCGCACGGGATGACGCCGCACGGAGCATCGCCCATACCATCAG
CGCTGCCCACCAGCGTGCACCAGGAGAACGTAGGCGGCACCATATACTTC
TATCCGACTGCCAACGCACAGAACAGCCAGCCCGTCGTCAATTCCATGGT
GGTGGATGGAACGCATCCGGCTCTCCATGGCGTGAGTGCTGTGGCGCCGA
TGAGTGCGGGCGTTCCGGCGGCCATGATGTACACGGGGCATGTGTATCCG
GGACCGTCCTCCAACGTGGTCACCATGCAGCCAAAGACGCTGCTGGAGTC
GGCCTTCTTTATGCCCGACGAGATGCGCGCCGAAGTCCTCGCCCGCAACG
AGATCTCTAACCTGATCATGGACGCAGCGGAGGCTGCGCAGCACGCTCTA
CCGCTGGAGGTGGAGAACTACCATGCCCTGTATCCACTGGAACCGCCGGC
GCAGCCGTTGCACGCCAAGCTCACGTTCCCCGCCACCACTTATAGGGCCA
CGCACAACACGACGGGCTACAAGTACTGCCTGCGAAGAATACATGGTTTC
CGCCTGCAGTCGACCAAGTGCATGACGCTGGTGGAGATGTGGAAGAAGCT
GCAGCACACGAATGTGGTACAACTGCGTGAGGTGTTCACGACGAAAGCAT
TTGGTGATAACTCTTTAGTATTAGTGTACGACTATCATCCCGGCTCACAA
ACATTACTGGCCAAATACTTCACTCCGGCGCCAGAGACCAACGGGTACAC
TGATCCATTCCAAGGCGAGGCCCGCCCCTTCAGTCATAAGAGTAACATGC
AGCGAACGAGCAATGGACCGCTGCTACCGGAGGCCACCATCTGGTCGATC
ATCATGCAGCTGACCGCCGGCTTAAAAGCCATCCACCATGCCGGTCTTGC
CTGCAAGGTTCTGGATCCCACAAAGATTATAGTGACGGGCAAGCGTGTAC
GGTTTAGCTCATGCTGCATTTCGGATATAACGCAATTCGATCCGAATGCA
TCCAATCCCTTGGCGCTGGTTAATATGCATCAGCAGGACGATCTGACCGC
TTTGGGTCGCTTAGTATTAGCTTTGGCCTGCCGCTGTCTTCAATCCGTGC
AACGCGACAATGTCCAGTCCAGCATCGATATGGTCACGCGAAACTACTCC
ACCGATCTGCGAAACTTTATTGTTTACCTCTTCACCACCAATAATCGTCG
CTCCGTGACCGACCTGATGCCGATGATTGGTGCCCGCTTCTATACGCAAC
TGGATGCACTGCAGAGCAAAATTGATATGCAGGAGGACGAGTTGGCCAAG
GAGATGGAGAACGGGCGGTTATATCGCATTTTGGTCAAACTTAATAGCAT
CAACGAGCGACCCGACTTTAATCTGGACTGCACTTGGTCTGAGACTGGTG
ATAGATACATGTTGAAATTATTCCGTGATTATTTGTTCCATTCCGTCACT
GAGGATGGCCGGCCCTGGCTAGATCACGCACACATTGTACAATGCCTCAA
CAAGCTGGATGCTGGCTCCATAGAGCGCGTGCAACTGATGTCCCGCGACG
AGCAATCGGTACTCATCGTCTCCTATGCTGAACTCAAGAATTGTCTGGAG
AACGCCTTCTCCGAACTGATGTCAAGTGCGGCCAACTGAAAGCTTTCTAG
ACCAT

BS04175.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RG 2373 CG11486-PG 1..2373 17..2389 11865 100 Plus
CG11486-RQ 2367 CG11486-PQ 32..2367 54..2389 11680 100 Plus
CG11486-RJ 2367 CG11486-PJ 32..2367 54..2389 11680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RG 3281 CG11486-RG 577..2949 17..2389 11865 100 Plus
CG11486-RQ 3277 CG11486-RQ 610..2945 54..2389 11680 100 Plus
CG11486-RJ 3133 CG11486-RJ 466..2801 54..2389 11680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3085198..3085801 221..824 3020 100 Plus
3L 28110227 3L 3085862..3086338 821..1297 2385 100 Plus
3L 28110227 3L 3087699..3087890 1924..2115 960 100 Plus
3L 28110227 3L 3087957..3088121 2116..2280 825 100 Plus
3L 28110227 3L 3087504..3087642 1785..1923 695 100 Plus
3L 28110227 3L 3087311..3087441 1657..1787 655 100 Plus
3L 28110227 3L 3087130..3087256 1531..1657 635 100 Plus
3L 28110227 3L 3086949..3087069 1413..1533 605 100 Plus
3L 28110227 3L 3086397..3086514 1295..1412 590 100 Plus
3L 28110227 3L 3088192..3088302 2279..2389 555 100 Plus
3L 28110227 3L 3084807..3084909 133..235 485 98.1 Plus
3L 28110227 3L 3083731..3083809 55..133 395 100 Plus
3L 28110227 3L 3079989..3080028 17..56 200 100 Plus
Blast to na_te.dros performed 2014-11-28 02:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2394 482..557 148 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6668..6794 438..557 148 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6773 517..557 142 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2364 517..560 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6818 488..560 133 69.7 Plus
roo 9092 roo DM_ROO 9092bp 1055..1145 473..560 132 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6884 517..560 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6838 488..562 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1588 518..561 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2373 517..557 115 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1123..1163 517..557 115 75.6 Plus

BS04175.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:32 Download gff for BS04175.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 582..2953 17..2388 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:53 Download gff for BS04175.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 577..2948 17..2388 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:41 Download gff for BS04175.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 582..2953 17..2388 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:39 Download gff for BS04175.complete
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 577..2948 17..2388 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:39 Download gff for BS04175.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3087311..3087440 1657..1786 100 -> Plus
3L 3087506..3087642 1787..1923 100 -> Plus
3L 3087699..3087890 1924..2115 100 -> Plus
3L 3087957..3088119 2116..2278 100 -> Plus
3L 3088192..3088301 2279..2388 100   Plus
3L 3086398..3086514 1296..1412 100 -> Plus
3L 3086949..3087069 1413..1533 100 -> Plus
3L 3087133..3087255 1534..1656 100 -> Plus
3L 3079989..3080028 17..56 100 -> Plus
3L 3083733..3083809 57..133 100 -> Plus
3L 3084808..3084900 134..226 100 -> Plus
3L 3085204..3085800 227..823 100 -> Plus
3L 3085865..3086336 824..1295 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:53 Download gff for BS04175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3087311..3087440 1657..1786 100 -> Plus
arm_3L 3087506..3087642 1787..1923 100 -> Plus
arm_3L 3087699..3087890 1924..2115 100 -> Plus
arm_3L 3087957..3088119 2116..2278 100 -> Plus
arm_3L 3088192..3088301 2279..2388 100   Plus
arm_3L 3087133..3087255 1534..1656 100 -> Plus
arm_3L 3079989..3080028 17..56 100 -> Plus
arm_3L 3083733..3083809 57..133 100 -> Plus
arm_3L 3084808..3084900 134..226 100 -> Plus
arm_3L 3085204..3085800 227..823 100 -> Plus
arm_3L 3085865..3086336 824..1295 100 -> Plus
arm_3L 3086398..3086514 1296..1412 100 -> Plus
arm_3L 3086949..3087069 1413..1533 100 -> Plus

BS04175.3prime Sequence

875 bp (838 high quality bases) assembled on 2005-12-01

> BS04175.3prime
ATGGTCTAGAAAGCTTTCAGTTGGCCGCACTTGACATCAGTTCGGAGAAG
GCGTTCTCCAGACAATTCTTGAGTTCAGCATAGGAGACGATGAGTACCGA
TTGCTCGTCGCGGGACATCAGTTGCACGCGCTCTATGGAGCCAGCATCCA
GCTTGTTGAGGCATTGTACAATGTGTGCGTGATCTAGCCAGGGCCGGCCA
TCCTCAGTGACGGAATGGAACAAATAATCACGGAATAATTTCAACATGTA
TCTATCACCAGTCTCAGACCAAGTGCAGTCCAGATTAAAGTCGGGTCGCT
CGTTGATGCTATTAAGTTTGACCAAAATGCGATATAACCGCCCGTTCTCC
ATCTCCTTGGCCAACTCGTCCTCCTGCATATCAATTTTGCTCTGCAGTGC
ATCCAGTTGCGTATAGAAGCGGGCACCAATCATCGGCATCAGGTCGGTCA
CGGAGCGACGATTATTGGTGGTGAAGAGGTAAACAATAAAGTTTCGCAGA
TCGGTGGAGTAGTTTCGCGTGACCATATCGATGCTGGACTGGACATTGTC
GCGTTGCACGGATTGAAGACAGCGGCAGGCCAAAGCTAATACTAAGCGAC
CCAAAGCGGTCAGATCGTCCTGCTGATGCATATTAACCAGCGCCAAGGGA
TTGGATGCATTCGGATCGAATTGCGTTATATCCGAAATGCAGCATGAGCT
AAACCGTACACGCTTGCCCGTCACTATAATCTTTGTGGGATCCAGAACCT
TGCAGGCAAGACCGGCATGGTGGATGGCTTTTAAGCCGGCGGTCAGCTGC
ATGATGATCGACCAGATGGTGGCCTCCGGTAGCAGCGGTCCATTGCTCGT
TCGCTGCATGTTACTCTTATGACTG

BS04175.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-PD 2229 CG11486-RD 1371..2229 875..17 4295 100 Minus
CG11486-PA 2229 CG11486-RA 1371..2229 875..17 4295 100 Minus
CG11486-PE 2322 CG11486-RE 1464..2322 875..17 4295 100 Minus
CG11486-PK 2367 CG11486-RK 1509..2367 875..17 4295 100 Minus
CG11486-PL 2274 CG11486-RL 1416..2274 875..17 4295 100 Minus
CG11486-PM 2367 CG11486-RM 1509..2367 875..17 4295 100 Minus
CG11486-PN 2367 CG11486-RN 1509..2367 875..17 4295 100 Minus
CG11486-PF 2367 CG11486-RF 1509..2367 875..17 4295 100 Minus
CG11486-PH 2367 CG11486-RH 1509..2367 875..17 4295 100 Minus
CG11486-PG 2373 CG11486-RG 1515..2373 875..17 4295 100 Minus
CG11486-PJ 2367 CG11486-RJ 1509..2367 875..17 4295 100 Minus
CG11486-PB 2229 CG11486-RB 1371..2229 875..17 4295 100 Minus
CG11486-PC 2343 CG11486-RC 1485..2343 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RR 4616 CG11486-RR 1654..2512 875..17 4295 100 Minus
CG11486-RQ 3277 CG11486-RQ 2087..2945 875..17 4295 100 Minus
CG11486-RP 3145 CG11486-RP 1955..2813 875..17 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3087699..3087890 482..291 960 100 Minus
3L 28110227 3L 3087957..3088121 290..126 825 100 Minus
3L 28110227 3L 3087504..3087642 621..483 695 100 Minus
3L 28110227 3L 3087311..3087441 749..619 655 100 Minus
3L 28110227 3L 3087130..3087256 875..749 635 100 Minus
3L 28110227 3L 3088192..3088302 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:19:12 has no hits.

BS04175.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:06 Download gff for BS04175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PC 1485..2343 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:34 Download gff for BS04175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PC 1485..2343 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:59:25 Download gff for BS04175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RP 1955..2815 13..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:00 Download gff for BS04175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RP 1955..2815 13..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:00 Download gff for BS04175.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3088192..3088304 13..127 98   Minus
3L 3087130..3087255 750..875 100 -> Minus
3L 3087311..3087440 620..749 100 -> Minus
3L 3087506..3087642 483..619 100 -> Minus
3L 3087699..3087890 291..482 100 -> Minus
3L 3087957..3088119 128..290 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:59:25 Download gff for BS04175.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3087130..3087255 750..875 100 -> Minus
arm_3L 3087311..3087440 620..749 100 -> Minus
arm_3L 3087506..3087642 483..619 100 -> Minus
arm_3L 3087699..3087890 291..482 100 -> Minus
arm_3L 3087957..3088119 128..290 100 -> Minus
arm_3L 3088192..3088304 13..127 98   Minus

BS04175.5prime Sequence

754 bp (738 high quality bases) assembled on 2005-12-01

> BS04175.5prime
GAAGTTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGT
TTTCAGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGA
ATACCGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGC
CACACCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGG
ATTCGCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTC
ATTCCAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAA
CGCGCCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAG
CCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTT
CCCTCCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAAC
GGCCAACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCG
CCTCTGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAA
CAGCATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCC
CATTGCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCA
GCAGCATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGC
CAGGAATCACCAACGGCAGCCATGATTTCGGGCGCAGGGCCAGGTGAGAA
GTCG

BS04175.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-PG 2373 CG11486-RG 1..738 17..754 3690 100 Plus
CG11486-PK 2367 CG11486-RK 32..732 54..754 3505 100 Plus
CG11486-PM 2367 CG11486-RM 32..732 54..754 3505 100 Plus
CG11486-PN 2367 CG11486-RN 32..732 54..754 3505 100 Plus
CG11486-PF 2367 CG11486-RF 32..732 54..754 3505 100 Plus
CG11486-PH 2367 CG11486-RH 32..732 54..754 3505 100 Plus
CG11486-PJ 2367 CG11486-RJ 32..732 54..754 3505 100 Plus
CG11486-PC 2343 CG11486-RC 11..708 57..754 3490 100 Plus
CG11486-PE 2322 CG11486-RE 1..687 68..754 3435 100 Plus
CG11486-PL 2274 CG11486-RL 111..639 226..754 2645 100 Plus
CG11486-PD 2229 CG11486-RD 66..594 226..754 2645 100 Plus
CG11486-PA 2229 CG11486-RA 66..594 226..754 2645 100 Plus
CG11486-PB 2229 CG11486-RB 66..594 226..754 2645 100 Plus
CG11486-PL 2274 CG11486-RL 32..111 54..133 400 100 Plus
CG11486-PD 2229 CG11486-RD 1..66 68..133 330 100 Plus
CG11486-PA 2229 CG11486-RA 1..66 68..133 330 100 Plus
CG11486-PB 2229 CG11486-RB 1..66 68..133 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-RG 3281 CG11486-RG 577..1314 17..754 3690 100 Plus
CG11486-RQ 3277 CG11486-RQ 610..1310 54..754 3505 100 Plus
CG11486-RJ 3133 CG11486-RJ 466..1166 54..754 3505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3085198..3085731 221..754 2670 100 Plus
3L 28110227 3L 3084807..3084909 133..235 485 98.1 Plus
3L 28110227 3L 3083731..3083809 55..133 395 100 Plus
3L 28110227 3L 3079989..3080028 17..56 200 100 Plus
Blast to na_te.dros performed 2015-02-11 17:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2394 482..557 148 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6668..6794 438..557 148 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6773 517..557 142 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2364 517..560 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6818 488..560 133 69.7 Plus
roo 9092 roo DM_ROO 9092bp 1055..1145 473..560 132 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6884 517..560 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6838 488..562 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1588 518..561 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2599..2799 346..557 117 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2373 517..557 115 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1123..1163 517..557 115 75.6 Plus

BS04175.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:07 Download gff for BS04175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PG 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:35 Download gff for BS04175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-PG 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:44:58 Download gff for BS04175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 571..1314 9..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:39 Download gff for BS04175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11486-RG 571..1314 9..754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:39 Download gff for BS04175.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3079983..3080028 9..56 91 -> Plus
3L 3083733..3083809 57..133 100 -> Plus
3L 3084808..3084900 134..226 100 -> Plus
3L 3085204..3085731 227..754 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:44:58 Download gff for BS04175.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3079983..3080028 9..56 91 -> Plus
arm_3L 3083733..3083809 57..133 100 -> Plus
arm_3L 3084808..3084900 134..226 100 -> Plus
arm_3L 3085204..3085731 227..754 100   Plus

BS04175.pep Sequence

Translation from 16 to 2388

> BS04175.pep
MCSTYGLLSFEFSDTAAMDPIFFSPTNGIPSESKLATYMNRQNVATPSGY
GLNNGFSLLNLDSPLNKKSQVTPQSPEFIPTRLGSTPNFYAPYHNAPMQL
SNGLNGVNGLTAAAAAAAAAAAAAAAAVPSSTSSASSASVTISKTANGGA
SMLALQKTASIASVTIAQQQPQHPQKQQQHPPSVGGGAVSAASAPIAISG
APPNPAAAPFVSSMSAQTPLKGRGAMMRQESPTAAMISGAGPGEKSPPHG
MTPHGASPIPSALPTSVHQENVGGTIYFYPTANAQNSQPVVNSMVVDGTH
PALHGVSAVAPMSAGVPAAMMYTGHVYPGPSSNVVTMQPKTLLESAFFMP
DEMRAEVLARNEISNLIMDAAEAAQHALPLEVENYHALYPLEPPAQPLHA
KLTFPATTYRATHNTTGYKYCLRRIHGFRLQSTKCMTLVEMWKKLQHTNV
VQLREVFTTKAFGDNSLVLVYDYHPGSQTLLAKYFTPAPETNGYTDPFQG
EARPFSHKSNMQRTSNGPLLPEATIWSIIMQLTAGLKAIHHAGLACKVLD
PTKIIVTGKRVRFSSCCISDITQFDPNASNPLALVNMHQQDDLTALGRLV
LALACRCLQSVQRDNVQSSIDMVTRNYSTDLRNFIVYLFTTNNRRSVTDL
MPMIGARFYTQLDALQSKIDMQEDELAKEMENGRLYRILVKLNSINERPD
FNLDCTWSETGDRYMLKLFRDYLFHSVTEDGRPWLDHAHIVQCLNKLDAG
SIERVQLMSRDEQSVLIVSYAELKNCLENAFSELMSSAAN*

BS04175.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11486-PG 790 CG11486-PG 1..790 1..790 4089 100 Plus
CG11486-PQ 788 CG11486-PQ 5..788 7..790 4022 99.4 Plus
CG11486-PJ 788 CG11486-PJ 5..788 7..790 4022 99.4 Plus
CG11486-PH 788 CG11486-PH 5..788 7..790 4022 99.4 Plus
CG11486-PF 788 CG11486-PF 5..788 7..790 4022 99.4 Plus