Clone Sequence Records
BS04175.complete Sequence
2405 bp assembled on 2009-12-07
GenBank Submission: KX793930
> BS04175.complete
GAAGTTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGT
TTTCAGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGA
ATACCGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGC
CACACCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGG
ATTCGCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTC
ATTCCAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAA
CGCGCCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAG
CCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTT
CCCTCCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAAC
GGCCAACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCG
CCTCTGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAA
CAGCATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCC
CATTGCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCA
GCAGCATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGC
CAGGAATCACCAACGGCAGCCATGATTTCGGGCGCAGGGCCAGGTGAGAA
GTCGCCACCGCACGGGATGACGCCGCACGGAGCATCGCCCATACCATCAG
CGCTGCCCACCAGCGTGCACCAGGAGAACGTAGGCGGCACCATATACTTC
TATCCGACTGCCAACGCACAGAACAGCCAGCCCGTCGTCAATTCCATGGT
GGTGGATGGAACGCATCCGGCTCTCCATGGCGTGAGTGCTGTGGCGCCGA
TGAGTGCGGGCGTTCCGGCGGCCATGATGTACACGGGGCATGTGTATCCG
GGACCGTCCTCCAACGTGGTCACCATGCAGCCAAAGACGCTGCTGGAGTC
GGCCTTCTTTATGCCCGACGAGATGCGCGCCGAAGTCCTCGCCCGCAACG
AGATCTCTAACCTGATCATGGACGCAGCGGAGGCTGCGCAGCACGCTCTA
CCGCTGGAGGTGGAGAACTACCATGCCCTGTATCCACTGGAACCGCCGGC
GCAGCCGTTGCACGCCAAGCTCACGTTCCCCGCCACCACTTATAGGGCCA
CGCACAACACGACGGGCTACAAGTACTGCCTGCGAAGAATACATGGTTTC
CGCCTGCAGTCGACCAAGTGCATGACGCTGGTGGAGATGTGGAAGAAGCT
GCAGCACACGAATGTGGTACAACTGCGTGAGGTGTTCACGACGAAAGCAT
TTGGTGATAACTCTTTAGTATTAGTGTACGACTATCATCCCGGCTCACAA
ACATTACTGGCCAAATACTTCACTCCGGCGCCAGAGACCAACGGGTACAC
TGATCCATTCCAAGGCGAGGCCCGCCCCTTCAGTCATAAGAGTAACATGC
AGCGAACGAGCAATGGACCGCTGCTACCGGAGGCCACCATCTGGTCGATC
ATCATGCAGCTGACCGCCGGCTTAAAAGCCATCCACCATGCCGGTCTTGC
CTGCAAGGTTCTGGATCCCACAAAGATTATAGTGACGGGCAAGCGTGTAC
GGTTTAGCTCATGCTGCATTTCGGATATAACGCAATTCGATCCGAATGCA
TCCAATCCCTTGGCGCTGGTTAATATGCATCAGCAGGACGATCTGACCGC
TTTGGGTCGCTTAGTATTAGCTTTGGCCTGCCGCTGTCTTCAATCCGTGC
AACGCGACAATGTCCAGTCCAGCATCGATATGGTCACGCGAAACTACTCC
ACCGATCTGCGAAACTTTATTGTTTACCTCTTCACCACCAATAATCGTCG
CTCCGTGACCGACCTGATGCCGATGATTGGTGCCCGCTTCTATACGCAAC
TGGATGCACTGCAGAGCAAAATTGATATGCAGGAGGACGAGTTGGCCAAG
GAGATGGAGAACGGGCGGTTATATCGCATTTTGGTCAAACTTAATAGCAT
CAACGAGCGACCCGACTTTAATCTGGACTGCACTTGGTCTGAGACTGGTG
ATAGATACATGTTGAAATTATTCCGTGATTATTTGTTCCATTCCGTCACT
GAGGATGGCCGGCCCTGGCTAGATCACGCACACATTGTACAATGCCTCAA
CAAGCTGGATGCTGGCTCCATAGAGCGCGTGCAACTGATGTCCCGCGACG
AGCAATCGGTACTCATCGTCTCCTATGCTGAACTCAAGAATTGTCTGGAG
AACGCCTTCTCCGAACTGATGTCAAGTGCGGCCAACTGAAAGCTTTCTAG
ACCAT
BS04175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-RG | 2373 | CG11486-PG | 1..2373 | 17..2389 | 11865 | 100 | Plus |
CG11486-RQ | 2367 | CG11486-PQ | 32..2367 | 54..2389 | 11680 | 100 | Plus |
CG11486-RJ | 2367 | CG11486-PJ | 32..2367 | 54..2389 | 11680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-RG | 3281 | CG11486-RG | 577..2949 | 17..2389 | 11865 | 100 | Plus |
CG11486-RQ | 3277 | CG11486-RQ | 610..2945 | 54..2389 | 11680 | 100 | Plus |
CG11486-RJ | 3133 | CG11486-RJ | 466..2801 | 54..2389 | 11680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3085198..3085801 | 221..824 | 3020 | 100 | Plus |
3L | 28110227 | 3L | 3085862..3086338 | 821..1297 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 3087699..3087890 | 1924..2115 | 960 | 100 | Plus |
3L | 28110227 | 3L | 3087957..3088121 | 2116..2280 | 825 | 100 | Plus |
3L | 28110227 | 3L | 3087504..3087642 | 1785..1923 | 695 | 100 | Plus |
3L | 28110227 | 3L | 3087311..3087441 | 1657..1787 | 655 | 100 | Plus |
3L | 28110227 | 3L | 3087130..3087256 | 1531..1657 | 635 | 100 | Plus |
3L | 28110227 | 3L | 3086949..3087069 | 1413..1533 | 605 | 100 | Plus |
3L | 28110227 | 3L | 3086397..3086514 | 1295..1412 | 590 | 100 | Plus |
3L | 28110227 | 3L | 3088192..3088302 | 2279..2389 | 555 | 100 | Plus |
3L | 28110227 | 3L | 3084807..3084909 | 133..235 | 485 | 98.1 | Plus |
3L | 28110227 | 3L | 3083731..3083809 | 55..133 | 395 | 100 | Plus |
3L | 28110227 | 3L | 3079989..3080028 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2394 | 482..557 | 148 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6668..6794 | 438..557 | 148 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6773 | 517..557 | 142 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2364 | 517..560 | 139 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6818 | 488..560 | 133 | 69.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1145 | 473..560 | 132 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6884 | 517..560 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6838 | 488..562 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1588 | 518..561 | 121 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2373 | 517..557 | 115 | 75.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1123..1163 | 517..557 | 115 | 75.6 | Plus |
BS04175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:32 Download gff for
BS04175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RG | 582..2953 | 17..2388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:53 Download gff for
BS04175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RG | 577..2948 | 17..2388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:41 Download gff for
BS04175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RG | 582..2953 | 17..2388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:39 Download gff for
BS04175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RG | 577..2948 | 17..2388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:39 Download gff for
BS04175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3087311..3087440 | 1657..1786 | 100 | -> | Plus |
3L | 3087506..3087642 | 1787..1923 | 100 | -> | Plus |
3L | 3087699..3087890 | 1924..2115 | 100 | -> | Plus |
3L | 3087957..3088119 | 2116..2278 | 100 | -> | Plus |
3L | 3088192..3088301 | 2279..2388 | 100 | | Plus |
3L | 3086398..3086514 | 1296..1412 | 100 | -> | Plus |
3L | 3086949..3087069 | 1413..1533 | 100 | -> | Plus |
3L | 3087133..3087255 | 1534..1656 | 100 | -> | Plus |
3L | 3079989..3080028 | 17..56 | 100 | -> | Plus |
3L | 3083733..3083809 | 57..133 | 100 | -> | Plus |
3L | 3084808..3084900 | 134..226 | 100 | -> | Plus |
3L | 3085204..3085800 | 227..823 | 100 | -> | Plus |
3L | 3085865..3086336 | 824..1295 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:53 Download gff for
BS04175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3087311..3087440 | 1657..1786 | 100 | -> | Plus |
arm_3L | 3087506..3087642 | 1787..1923 | 100 | -> | Plus |
arm_3L | 3087699..3087890 | 1924..2115 | 100 | -> | Plus |
arm_3L | 3087957..3088119 | 2116..2278 | 100 | -> | Plus |
arm_3L | 3088192..3088301 | 2279..2388 | 100 | | Plus |
arm_3L | 3087133..3087255 | 1534..1656 | 100 | -> | Plus |
arm_3L | 3079989..3080028 | 17..56 | 100 | -> | Plus |
arm_3L | 3083733..3083809 | 57..133 | 100 | -> | Plus |
arm_3L | 3084808..3084900 | 134..226 | 100 | -> | Plus |
arm_3L | 3085204..3085800 | 227..823 | 100 | -> | Plus |
arm_3L | 3085865..3086336 | 824..1295 | 100 | -> | Plus |
arm_3L | 3086398..3086514 | 1296..1412 | 100 | -> | Plus |
arm_3L | 3086949..3087069 | 1413..1533 | 100 | -> | Plus |
BS04175.3prime Sequence
875 bp (838 high quality bases) assembled on 2005-12-01
> BS04175.3prime
ATGGTCTAGAAAGCTTTCAGTTGGCCGCACTTGACATCAGTTCGGAGAAG
GCGTTCTCCAGACAATTCTTGAGTTCAGCATAGGAGACGATGAGTACCGA
TTGCTCGTCGCGGGACATCAGTTGCACGCGCTCTATGGAGCCAGCATCCA
GCTTGTTGAGGCATTGTACAATGTGTGCGTGATCTAGCCAGGGCCGGCCA
TCCTCAGTGACGGAATGGAACAAATAATCACGGAATAATTTCAACATGTA
TCTATCACCAGTCTCAGACCAAGTGCAGTCCAGATTAAAGTCGGGTCGCT
CGTTGATGCTATTAAGTTTGACCAAAATGCGATATAACCGCCCGTTCTCC
ATCTCCTTGGCCAACTCGTCCTCCTGCATATCAATTTTGCTCTGCAGTGC
ATCCAGTTGCGTATAGAAGCGGGCACCAATCATCGGCATCAGGTCGGTCA
CGGAGCGACGATTATTGGTGGTGAAGAGGTAAACAATAAAGTTTCGCAGA
TCGGTGGAGTAGTTTCGCGTGACCATATCGATGCTGGACTGGACATTGTC
GCGTTGCACGGATTGAAGACAGCGGCAGGCCAAAGCTAATACTAAGCGAC
CCAAAGCGGTCAGATCGTCCTGCTGATGCATATTAACCAGCGCCAAGGGA
TTGGATGCATTCGGATCGAATTGCGTTATATCCGAAATGCAGCATGAGCT
AAACCGTACACGCTTGCCCGTCACTATAATCTTTGTGGGATCCAGAACCT
TGCAGGCAAGACCGGCATGGTGGATGGCTTTTAAGCCGGCGGTCAGCTGC
ATGATGATCGACCAGATGGTGGCCTCCGGTAGCAGCGGTCCATTGCTCGT
TCGCTGCATGTTACTCTTATGACTG
BS04175.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-PD | 2229 | CG11486-RD | 1371..2229 | 875..17 | 4295 | 100 | Minus |
CG11486-PA | 2229 | CG11486-RA | 1371..2229 | 875..17 | 4295 | 100 | Minus |
CG11486-PE | 2322 | CG11486-RE | 1464..2322 | 875..17 | 4295 | 100 | Minus |
CG11486-PK | 2367 | CG11486-RK | 1509..2367 | 875..17 | 4295 | 100 | Minus |
CG11486-PL | 2274 | CG11486-RL | 1416..2274 | 875..17 | 4295 | 100 | Minus |
CG11486-PM | 2367 | CG11486-RM | 1509..2367 | 875..17 | 4295 | 100 | Minus |
CG11486-PN | 2367 | CG11486-RN | 1509..2367 | 875..17 | 4295 | 100 | Minus |
CG11486-PF | 2367 | CG11486-RF | 1509..2367 | 875..17 | 4295 | 100 | Minus |
CG11486-PH | 2367 | CG11486-RH | 1509..2367 | 875..17 | 4295 | 100 | Minus |
CG11486-PG | 2373 | CG11486-RG | 1515..2373 | 875..17 | 4295 | 100 | Minus |
CG11486-PJ | 2367 | CG11486-RJ | 1509..2367 | 875..17 | 4295 | 100 | Minus |
CG11486-PB | 2229 | CG11486-RB | 1371..2229 | 875..17 | 4295 | 100 | Minus |
CG11486-PC | 2343 | CG11486-RC | 1485..2343 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-RR | 4616 | CG11486-RR | 1654..2512 | 875..17 | 4295 | 100 | Minus |
CG11486-RQ | 3277 | CG11486-RQ | 2087..2945 | 875..17 | 4295 | 100 | Minus |
CG11486-RP | 3145 | CG11486-RP | 1955..2813 | 875..17 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3087699..3087890 | 482..291 | 960 | 100 | Minus |
3L | 28110227 | 3L | 3087957..3088121 | 290..126 | 825 | 100 | Minus |
3L | 28110227 | 3L | 3087504..3087642 | 621..483 | 695 | 100 | Minus |
3L | 28110227 | 3L | 3087311..3087441 | 749..619 | 655 | 100 | Minus |
3L | 28110227 | 3L | 3087130..3087256 | 875..749 | 635 | 100 | Minus |
3L | 28110227 | 3L | 3088192..3088302 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:19:12 has no hits.
BS04175.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:06 Download gff for
BS04175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-PC | 1485..2343 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:34 Download gff for
BS04175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-PC | 1485..2343 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:59:25 Download gff for
BS04175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RP | 1955..2815 | 13..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:00 Download gff for
BS04175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RP | 1955..2815 | 13..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:00 Download gff for
BS04175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3088192..3088304 | 13..127 | 98 | | Minus |
3L | 3087130..3087255 | 750..875 | 100 | -> | Minus |
3L | 3087311..3087440 | 620..749 | 100 | -> | Minus |
3L | 3087506..3087642 | 483..619 | 100 | -> | Minus |
3L | 3087699..3087890 | 291..482 | 100 | -> | Minus |
3L | 3087957..3088119 | 128..290 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:59:25 Download gff for
BS04175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3087130..3087255 | 750..875 | 100 | -> | Minus |
arm_3L | 3087311..3087440 | 620..749 | 100 | -> | Minus |
arm_3L | 3087506..3087642 | 483..619 | 100 | -> | Minus |
arm_3L | 3087699..3087890 | 291..482 | 100 | -> | Minus |
arm_3L | 3087957..3088119 | 128..290 | 100 | -> | Minus |
arm_3L | 3088192..3088304 | 13..127 | 98 | | Minus |
BS04175.5prime Sequence
754 bp (738 high quality bases) assembled on 2005-12-01
> BS04175.5prime
GAAGTTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGT
TTTCAGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGA
ATACCGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGC
CACACCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGG
ATTCGCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTC
ATTCCAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAA
CGCGCCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAG
CCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTT
CCCTCCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAAC
GGCCAACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCG
CCTCTGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAA
CAGCATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCC
CATTGCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCA
GCAGCATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGC
CAGGAATCACCAACGGCAGCCATGATTTCGGGCGCAGGGCCAGGTGAGAA
GTCG
BS04175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-PG | 2373 | CG11486-RG | 1..738 | 17..754 | 3690 | 100 | Plus |
CG11486-PK | 2367 | CG11486-RK | 32..732 | 54..754 | 3505 | 100 | Plus |
CG11486-PM | 2367 | CG11486-RM | 32..732 | 54..754 | 3505 | 100 | Plus |
CG11486-PN | 2367 | CG11486-RN | 32..732 | 54..754 | 3505 | 100 | Plus |
CG11486-PF | 2367 | CG11486-RF | 32..732 | 54..754 | 3505 | 100 | Plus |
CG11486-PH | 2367 | CG11486-RH | 32..732 | 54..754 | 3505 | 100 | Plus |
CG11486-PJ | 2367 | CG11486-RJ | 32..732 | 54..754 | 3505 | 100 | Plus |
CG11486-PC | 2343 | CG11486-RC | 11..708 | 57..754 | 3490 | 100 | Plus |
CG11486-PE | 2322 | CG11486-RE | 1..687 | 68..754 | 3435 | 100 | Plus |
CG11486-PL | 2274 | CG11486-RL | 111..639 | 226..754 | 2645 | 100 | Plus |
CG11486-PD | 2229 | CG11486-RD | 66..594 | 226..754 | 2645 | 100 | Plus |
CG11486-PA | 2229 | CG11486-RA | 66..594 | 226..754 | 2645 | 100 | Plus |
CG11486-PB | 2229 | CG11486-RB | 66..594 | 226..754 | 2645 | 100 | Plus |
CG11486-PL | 2274 | CG11486-RL | 32..111 | 54..133 | 400 | 100 | Plus |
CG11486-PD | 2229 | CG11486-RD | 1..66 | 68..133 | 330 | 100 | Plus |
CG11486-PA | 2229 | CG11486-RA | 1..66 | 68..133 | 330 | 100 | Plus |
CG11486-PB | 2229 | CG11486-RB | 1..66 | 68..133 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-RG | 3281 | CG11486-RG | 577..1314 | 17..754 | 3690 | 100 | Plus |
CG11486-RQ | 3277 | CG11486-RQ | 610..1310 | 54..754 | 3505 | 100 | Plus |
CG11486-RJ | 3133 | CG11486-RJ | 466..1166 | 54..754 | 3505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3085198..3085731 | 221..754 | 2670 | 100 | Plus |
3L | 28110227 | 3L | 3084807..3084909 | 133..235 | 485 | 98.1 | Plus |
3L | 28110227 | 3L | 3083731..3083809 | 55..133 | 395 | 100 | Plus |
3L | 28110227 | 3L | 3079989..3080028 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2394 | 482..557 | 148 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6668..6794 | 438..557 | 148 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6773 | 517..557 | 142 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2364 | 517..560 | 139 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6818 | 488..560 | 133 | 69.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1145 | 473..560 | 132 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6884 | 517..560 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6838 | 488..562 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1588 | 518..561 | 121 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2799 | 346..557 | 117 | 54 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2373 | 517..557 | 115 | 75.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1123..1163 | 517..557 | 115 | 75.6 | Plus |
BS04175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:07 Download gff for
BS04175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-PG | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:35 Download gff for
BS04175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-PG | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:44:58 Download gff for
BS04175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RG | 571..1314 | 9..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:39 Download gff for
BS04175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11486-RG | 571..1314 | 9..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:39 Download gff for
BS04175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3079983..3080028 | 9..56 | 91 | -> | Plus |
3L | 3083733..3083809 | 57..133 | 100 | -> | Plus |
3L | 3084808..3084900 | 134..226 | 100 | -> | Plus |
3L | 3085204..3085731 | 227..754 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:44:58 Download gff for
BS04175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3079983..3080028 | 9..56 | 91 | -> | Plus |
arm_3L | 3083733..3083809 | 57..133 | 100 | -> | Plus |
arm_3L | 3084808..3084900 | 134..226 | 100 | -> | Plus |
arm_3L | 3085204..3085731 | 227..754 | 100 | | Plus |
BS04175.pep Sequence
Translation from 16 to 2388
> BS04175.pep
MCSTYGLLSFEFSDTAAMDPIFFSPTNGIPSESKLATYMNRQNVATPSGY
GLNNGFSLLNLDSPLNKKSQVTPQSPEFIPTRLGSTPNFYAPYHNAPMQL
SNGLNGVNGLTAAAAAAAAAAAAAAAAVPSSTSSASSASVTISKTANGGA
SMLALQKTASIASVTIAQQQPQHPQKQQQHPPSVGGGAVSAASAPIAISG
APPNPAAAPFVSSMSAQTPLKGRGAMMRQESPTAAMISGAGPGEKSPPHG
MTPHGASPIPSALPTSVHQENVGGTIYFYPTANAQNSQPVVNSMVVDGTH
PALHGVSAVAPMSAGVPAAMMYTGHVYPGPSSNVVTMQPKTLLESAFFMP
DEMRAEVLARNEISNLIMDAAEAAQHALPLEVENYHALYPLEPPAQPLHA
KLTFPATTYRATHNTTGYKYCLRRIHGFRLQSTKCMTLVEMWKKLQHTNV
VQLREVFTTKAFGDNSLVLVYDYHPGSQTLLAKYFTPAPETNGYTDPFQG
EARPFSHKSNMQRTSNGPLLPEATIWSIIMQLTAGLKAIHHAGLACKVLD
PTKIIVTGKRVRFSSCCISDITQFDPNASNPLALVNMHQQDDLTALGRLV
LALACRCLQSVQRDNVQSSIDMVTRNYSTDLRNFIVYLFTTNNRRSVTDL
MPMIGARFYTQLDALQSKIDMQEDELAKEMENGRLYRILVKLNSINERPD
FNLDCTWSETGDRYMLKLFRDYLFHSVTEDGRPWLDHAHIVQCLNKLDAG
SIERVQLMSRDEQSVLIVSYAELKNCLENAFSELMSSAAN*
BS04175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11486-PG | 790 | CG11486-PG | 1..790 | 1..790 | 4089 | 100 | Plus |
CG11486-PQ | 788 | CG11486-PQ | 5..788 | 7..790 | 4022 | 99.4 | Plus |
CG11486-PJ | 788 | CG11486-PJ | 5..788 | 7..790 | 4022 | 99.4 | Plus |
CG11486-PH | 788 | CG11486-PH | 5..788 | 7..790 | 4022 | 99.4 | Plus |
CG11486-PF | 788 | CG11486-PF | 5..788 | 7..790 | 4022 | 99.4 | Plus |