Clone Sequence Records
BS04180.5prime Sequence
762 bp (692 high quality bases) assembled on 2005-11-29
> BS04180.5prime
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCG
BS04180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-PA | 1347 | CG5149-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1898 | CG5149-RA | 151..896 | 17..762 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7385867..7386182 | 686..371 | 1580 | 100 | Minus |
2L | 23513712 | 2L | 7386424..7386649 | 370..145 | 1130 | 100 | Minus |
2L | 23513712 | 2L | 7387974..7388103 | 146..17 | 650 | 100 | Minus |
2L | 23513712 | 2L | 7385729..7385805 | 762..686 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:32:07 has no hits.
BS04180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:15 Download gff for
BS04180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:47 Download gff for
BS04180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:46 Download gff for
BS04180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 144..896 | 8..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:37 Download gff for
BS04180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 144..896 | 8..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:37 Download gff for
BS04180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
2L | 7387975..7388110 | 8..145 | 97 | | Minus |
2L | 7385729..7385804 | 687..762 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:46 Download gff for
BS04180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7387975..7388110 | 8..145 | 97 | | Minus |
arm_2L | 7385729..7385804 | 687..762 | 100 | <- | Minus |
arm_2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
arm_2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
BS04180.3prime Sequence
868 bp (804 high quality bases) assembled on 2005-12-01
> BS04180.3prime
ATGGTCTAGAAAGCTTTCAATCATCCATGTTGGGCTCACGCAATCCATCC
GAGTGCATTTTCTTGCCCGCAATTTCCAACATGGCCCGATCTTCCAAATT
GCCATCCAGCACAGAACGTTTGTGACCGTCGCCTTCTTCGTCTTCTTCTT
TAACTGGTAAGTCTCCTACGGCCCAAACTTCCATGTTTCGTATTTTGAAC
TGTTTCCGTTTACTCAACTGCACGTAGTCTCGATATGTAGTGCAACTTTC
AACGCTTTGTCCATCGCCGAAACTGCAGTCAATCCAAAGGCCCCAAAAAT
CAAACTGACCGCCCATGCCCAGGCCATTCGGCATAGTCTGCTGATTCAAA
TTCAAATACTGATAGTGATTGTTATAAGTTGTGGCCGAAAAGCACCGCAT
GGCAGGGCTTAAGGTGTAGAGCAATGAGCTGTCATCGCCTCCAAATTGCG
GTTTCACGGACCACGTTTCGGACGCGTAGCCGCCAAATATATATTGATCC
TCGTCCTCAATAAAGAACAGCGTTGGTCCTTTGTCCAGCACTTTTCCCAA
CATCGTCGAGAAGCTTTCCCCGTTGATTTTCGATGAGAATAGAAAGCGCC
ATTTGTGCCGATGTTCGCGGGGCAGCTGAGCATTGATATACAGGACGTGA
GGTAGTTCGATGATAGGGCGATAATGACTATTTTGCGGAGCATCACACAG
TGCTGGCAGAATTGGAATTTCCATTTCCTTGATTATGTTGCGTTTGCTGC
CACCATGGCGACAATACAGCTGGCTAAAGACCTCGCGCCAAATCTGCAAA
AACTGCGGAGTGACGTGTAACAAACGTTCCAGGGCATCGTTGGGCATAGT
GTGCTCTAACTCCTTGCC
BS04180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-PA | 1347 | CG5149-RA | 496..1347 | 868..17 | 4210 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1898 | CG5149-RA | 646..1497 | 868..17 | 4230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7385430..7385805 | 319..694 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 7385867..7386041 | 694..868 | 845 | 98.9 | Plus |
2L | 23513712 | 2L | 7385260..7385367 | 213..320 | 540 | 100 | Plus |
2L | 23513712 | 2L | 7384887..7384991 | 17..121 | 525 | 100 | Plus |
2L | 23513712 | 2L | 7385050..7385142 | 122..214 | 465 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2781..2874 | 197..288 | 141 | 64.2 | Plus |
BS04180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:14 Download gff for
BS04180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 496..1347 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:45 Download gff for
BS04180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-PA | 496..1347 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:33 Download gff for
BS04180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 646..1501 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:03 Download gff for
BS04180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 646..1501 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:03 Download gff for
BS04180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7384881..7384991 | 14..121 | 96 | <- | Plus |
2L | 7385050..7385140 | 122..212 | 100 | <- | Plus |
2L | 7385260..7385366 | 213..319 | 100 | <- | Plus |
2L | 7385431..7385804 | 320..693 | 100 | <- | Plus |
2L | 7385867..7386041 | 694..868 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:33 Download gff for
BS04180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7384881..7384991 | 14..121 | 96 | <- | Plus |
arm_2L | 7385050..7385140 | 122..212 | 100 | <- | Plus |
arm_2L | 7385260..7385366 | 213..319 | 100 | <- | Plus |
arm_2L | 7385431..7385804 | 320..693 | 100 | <- | Plus |
arm_2L | 7385867..7386041 | 694..868 | 98 | | Plus |
BS04180.complete Sequence
1379 bp (1379 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634873
> BS04180.complete
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCGA
AAATCAACGGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAA
GGACCAACGCTGTTCTTTATTGAGGACGAGGATCAATATATATTTGGCGG
CTACGCGTCCGAAACGTGGTCCGTGAAACCGCAATTTGGAGGCGATGACA
GCTCATTGCTCTACACCTTAAGCCCTGCCATGCGGTGCTTTTCGGCCACA
ACTTATAACAATCACTATCAGTATTTGAATTTGAATCAGCAGACTATGCC
GAATGGCCTGGGCATGGGCGGTCAGTTTGATTTTTGGGGCCTTTGGATTG
ACTGCAGTTTCGGCGATGGACAAAGCGTTGAAAGTTGCACTACATATCGA
GACTACGTGCAGTTGAGTAAACGGAAACAGTTCAAAATACGAAACATGGA
AGTTTGGGCCGTAGGAGACTTACCAGTTAAAGAAGAAGACGAAGAAGGCG
ACGGTCACAAACGTTCTGTGCTGGATGGCAATTTGGAAGATCGGGCCATG
TTGGAAATTGCGGGCAAGAAAATGCACTCGGATGGATTGCGTGAGCCCAA
CATGGATGATTGAAAGCTTTCTAGACCAT
BS04180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1347 | CG5149-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-RA | 1898 | CG5149-RA | 151..1497 | 17..1363 | 6735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7385430..7385805 | 1061..686 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 7385867..7386182 | 686..371 | 1580 | 100 | Minus |
2L | 23513712 | 2L | 7386424..7386649 | 370..145 | 1130 | 100 | Minus |
2L | 23513712 | 2L | 7387974..7388103 | 146..17 | 650 | 100 | Minus |
2L | 23513712 | 2L | 7385260..7385367 | 1167..1060 | 540 | 100 | Minus |
2L | 23513712 | 2L | 7384887..7384991 | 1363..1259 | 525 | 100 | Minus |
2L | 23513712 | 2L | 7385050..7385142 | 1258..1166 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2781..2874 | 1183..1092 | 141 | 64.2 | Minus |
BS04180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:13 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:04 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 146..1491 | 17..1362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:48 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 151..1496 | 17..1362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:13 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 139..1496 | 8..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:29 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5149-RA | 151..1496 | 17..1362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:29 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7384888..7384991 | 1259..1362 | 100 | <- | Minus |
2L | 7385050..7385140 | 1168..1258 | 100 | <- | Minus |
2L | 7385260..7385366 | 1061..1167 | 100 | <- | Minus |
2L | 7385431..7385804 | 687..1060 | 100 | <- | Minus |
2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
2L | 7387975..7388103 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:48 Download gff for
BS04180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7384888..7384991 | 1259..1362 | 100 | <- | Minus |
arm_2L | 7385050..7385140 | 1168..1258 | 100 | <- | Minus |
arm_2L | 7385260..7385366 | 1061..1167 | 100 | <- | Minus |
arm_2L | 7385431..7385804 | 687..1060 | 100 | <- | Minus |
arm_2L | 7385867..7386182 | 371..686 | 100 | <- | Minus |
arm_2L | 7386424..7386648 | 146..370 | 100 | <- | Minus |
arm_2L | 7387975..7388103 | 17..145 | 100 | | Minus |
BS04180.pep Sequence
Translation from 16 to 1362
> BS04180.pep
MGNASGKRETDNLYNSEELRMLESAYKNASGGALEKLTQDRLVETWSQTI
ERSLAESTAQYLFTPTKPGQQCVNLQLKKFGEPYYIMERGTIDQKMQMLL
GSMERSGNDTFNSKQLEQYIYSVIKSYVHLESTAKNSGIKEWHDLGFNTT
ERSAATFAKGLMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLY
CRHGGSKRNIIKEMEIPILPALCDAPQNSHYRPIIELPHVLYINAQLPRE
HRHKWRFLFSSKINGESFSTMLGKVLDKGPTLFFIEDEDQYIFGGYASET
WSVKPQFGGDDSSLLYTLSPAMRCFSATTYNNHYQYLNLNQQTMPNGLGM
GGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVWAVG
DLPVKEEDEEGDGHKRSVLDGNLEDRAMLEIAGKKMHSDGLREPNMDD*
BS04180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5149-PA | 448 | CG5149-PA | 1..448 | 1..448 | 2394 | 100 | Plus |
mtd-PQ | 192 | CG32464-PQ | 48..190 | 249..398 | 168 | 29.1 | Plus |
mtd-PH | 192 | CG32464-PH | 48..190 | 249..398 | 168 | 29.1 | Plus |
mtd-PA | 210 | CG32464-PA | 66..208 | 249..398 | 168 | 29.1 | Plus |
mtd-PI | 213 | CG32464-PI | 69..211 | 249..398 | 168 | 29.1 | Plus |