Clone BS04180 Report

Search the DGRC for BS04180

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG5149-RA
Protein status:BS04180.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04180.5prime Sequence

762 bp (692 high quality bases) assembled on 2005-11-29

> BS04180.5prime
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCG

BS04180.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 1347 CG5149-RA 1..746 17..762 3730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 151..896 17..762 3730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385867..7386182 686..371 1580 100 Minus
2L 23513712 2L 7386424..7386649 370..145 1130 100 Minus
2L 23513712 2L 7387974..7388103 146..17 650 100 Minus
2L 23513712 2L 7385729..7385805 762..686 385 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:32:07 has no hits.

BS04180.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:15 Download gff for BS04180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 1..746 17..762 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:47 Download gff for BS04180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 1..746 17..762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:46 Download gff for BS04180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 144..896 8..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:37 Download gff for BS04180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 144..896 8..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:37 Download gff for BS04180.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7385867..7386182 371..686 100 <- Minus
2L 7386424..7386648 146..370 100 <- Minus
2L 7387975..7388110 8..145 97   Minus
2L 7385729..7385804 687..762 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:46 Download gff for BS04180.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7387975..7388110 8..145 97   Minus
arm_2L 7385729..7385804 687..762 100 <- Minus
arm_2L 7385867..7386182 371..686 100 <- Minus
arm_2L 7386424..7386648 146..370 100 <- Minus

BS04180.3prime Sequence

868 bp (804 high quality bases) assembled on 2005-12-01

> BS04180.3prime
ATGGTCTAGAAAGCTTTCAATCATCCATGTTGGGCTCACGCAATCCATCC
GAGTGCATTTTCTTGCCCGCAATTTCCAACATGGCCCGATCTTCCAAATT
GCCATCCAGCACAGAACGTTTGTGACCGTCGCCTTCTTCGTCTTCTTCTT
TAACTGGTAAGTCTCCTACGGCCCAAACTTCCATGTTTCGTATTTTGAAC
TGTTTCCGTTTACTCAACTGCACGTAGTCTCGATATGTAGTGCAACTTTC
AACGCTTTGTCCATCGCCGAAACTGCAGTCAATCCAAAGGCCCCAAAAAT
CAAACTGACCGCCCATGCCCAGGCCATTCGGCATAGTCTGCTGATTCAAA
TTCAAATACTGATAGTGATTGTTATAAGTTGTGGCCGAAAAGCACCGCAT
GGCAGGGCTTAAGGTGTAGAGCAATGAGCTGTCATCGCCTCCAAATTGCG
GTTTCACGGACCACGTTTCGGACGCGTAGCCGCCAAATATATATTGATCC
TCGTCCTCAATAAAGAACAGCGTTGGTCCTTTGTCCAGCACTTTTCCCAA
CATCGTCGAGAAGCTTTCCCCGTTGATTTTCGATGAGAATAGAAAGCGCC
ATTTGTGCCGATGTTCGCGGGGCAGCTGAGCATTGATATACAGGACGTGA
GGTAGTTCGATGATAGGGCGATAATGACTATTTTGCGGAGCATCACACAG
TGCTGGCAGAATTGGAATTTCCATTTCCTTGATTATGTTGCGTTTGCTGC
CACCATGGCGACAATACAGCTGGCTAAAGACCTCGCGCCAAATCTGCAAA
AACTGCGGAGTGACGTGTAACAAACGTTCCAGGGCATCGTTGGGCATAGT
GTGCTCTAACTCCTTGCC

BS04180.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 1347 CG5149-RA 496..1347 868..17 4210 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 646..1497 868..17 4230 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385430..7385805 319..694 1880 100 Plus
2L 23513712 2L 7385867..7386041 694..868 845 98.9 Plus
2L 23513712 2L 7385260..7385367 213..320 540 100 Plus
2L 23513712 2L 7384887..7384991 17..121 525 100 Plus
2L 23513712 2L 7385050..7385142 122..214 465 100 Plus
Blast to na_te.dros performed 2015-02-10 22:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2781..2874 197..288 141 64.2 Plus

BS04180.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:14 Download gff for BS04180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 496..1347 17..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:01:45 Download gff for BS04180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-PA 496..1347 17..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:33 Download gff for BS04180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 646..1501 11..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:03 Download gff for BS04180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 646..1501 11..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:03 Download gff for BS04180.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7384881..7384991 14..121 96 <- Plus
2L 7385050..7385140 122..212 100 <- Plus
2L 7385260..7385366 213..319 100 <- Plus
2L 7385431..7385804 320..693 100 <- Plus
2L 7385867..7386041 694..868 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:33 Download gff for BS04180.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7384881..7384991 14..121 96 <- Plus
arm_2L 7385050..7385140 122..212 100 <- Plus
arm_2L 7385260..7385366 213..319 100 <- Plus
arm_2L 7385431..7385804 320..693 100 <- Plus
arm_2L 7385867..7386041 694..868 98   Plus

BS04180.complete Sequence

1379 bp (1379 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634873

> BS04180.complete
GAAGTTATCAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATA
ATCTCTACAATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAAC
GCCTCTGGCGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAAC
TTGGTCGCAAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATC
TATTTACGCCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAG
AAATTTGGAGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAA
AATGCAAATGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCA
ACAGCAAGCAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTG
CACTTGGAAAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCT
TGGCTTTAACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTA
TGAGAAATCTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTG
GAACGTTGGTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGT
CTTTAGCCAGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCA
AGGAAATGGAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAAT
AGTCATTATCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGC
TCAGCTGCCCCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCGA
AAATCAACGGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAA
GGACCAACGCTGTTCTTTATTGAGGACGAGGATCAATATATATTTGGCGG
CTACGCGTCCGAAACGTGGTCCGTGAAACCGCAATTTGGAGGCGATGACA
GCTCATTGCTCTACACCTTAAGCCCTGCCATGCGGTGCTTTTCGGCCACA
ACTTATAACAATCACTATCAGTATTTGAATTTGAATCAGCAGACTATGCC
GAATGGCCTGGGCATGGGCGGTCAGTTTGATTTTTGGGGCCTTTGGATTG
ACTGCAGTTTCGGCGATGGACAAAGCGTTGAAAGTTGCACTACATATCGA
GACTACGTGCAGTTGAGTAAACGGAAACAGTTCAAAATACGAAACATGGA
AGTTTGGGCCGTAGGAGACTTACCAGTTAAAGAAGAAGACGAAGAAGGCG
ACGGTCACAAACGTTCTGTGCTGGATGGCAATTTGGAAGATCGGGCCATG
TTGGAAATTGCGGGCAAGAAAATGCACTCGGATGGATTGCGTGAGCCCAA
CATGGATGATTGAAAGCTTTCTAGACCAT

BS04180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1347 CG5149-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 151..1497 17..1363 6735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385430..7385805 1061..686 1880 100 Minus
2L 23513712 2L 7385867..7386182 686..371 1580 100 Minus
2L 23513712 2L 7386424..7386649 370..145 1130 100 Minus
2L 23513712 2L 7387974..7388103 146..17 650 100 Minus
2L 23513712 2L 7385260..7385367 1167..1060 540 100 Minus
2L 23513712 2L 7384887..7384991 1363..1259 525 100 Minus
2L 23513712 2L 7385050..7385142 1258..1166 465 100 Minus
Blast to na_te.dros performed 2014-11-28 05:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2781..2874 1183..1092 141 64.2 Minus

BS04180.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:13 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:04 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 146..1491 17..1362 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:48 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 151..1496 17..1362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:13 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 139..1496 8..1369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:29 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 151..1496 17..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:29 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7384888..7384991 1259..1362 100 <- Minus
2L 7385050..7385140 1168..1258 100 <- Minus
2L 7385260..7385366 1061..1167 100 <- Minus
2L 7385431..7385804 687..1060 100 <- Minus
2L 7385867..7386182 371..686 100 <- Minus
2L 7386424..7386648 146..370 100 <- Minus
2L 7387975..7388103 17..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:48 Download gff for BS04180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7384888..7384991 1259..1362 100 <- Minus
arm_2L 7385050..7385140 1168..1258 100 <- Minus
arm_2L 7385260..7385366 1061..1167 100 <- Minus
arm_2L 7385431..7385804 687..1060 100 <- Minus
arm_2L 7385867..7386182 371..686 100 <- Minus
arm_2L 7386424..7386648 146..370 100 <- Minus
arm_2L 7387975..7388103 17..145 100   Minus

BS04180.pep Sequence

Translation from 16 to 1362

> BS04180.pep
MGNASGKRETDNLYNSEELRMLESAYKNASGGALEKLTQDRLVETWSQTI
ERSLAESTAQYLFTPTKPGQQCVNLQLKKFGEPYYIMERGTIDQKMQMLL
GSMERSGNDTFNSKQLEQYIYSVIKSYVHLESTAKNSGIKEWHDLGFNTT
ERSAATFAKGLMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLY
CRHGGSKRNIIKEMEIPILPALCDAPQNSHYRPIIELPHVLYINAQLPRE
HRHKWRFLFSSKINGESFSTMLGKVLDKGPTLFFIEDEDQYIFGGYASET
WSVKPQFGGDDSSLLYTLSPAMRCFSATTYNNHYQYLNLNQQTMPNGLGM
GGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVWAVG
DLPVKEEDEEGDGHKRSVLDGNLEDRAMLEIAGKKMHSDGLREPNMDD*

BS04180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-PA 448 CG5149-PA 1..448 1..448 2394 100 Plus
mtd-PQ 192 CG32464-PQ 48..190 249..398 168 29.1 Plus
mtd-PH 192 CG32464-PH 48..190 249..398 168 29.1 Plus
mtd-PA 210 CG32464-PA 66..208 249..398 168 29.1 Plus
mtd-PI 213 CG32464-PI 69..211 249..398 168 29.1 Plus