Clone Sequence Records
BS04192.3prime Sequence
849 bp (769 high quality bases) assembled on 2005-12-01
> BS04192.3prime
ATGGTCTAGAAAGCTTCTACAACTTGGCGCGCTTCGGCACGCCGATGGCC
TCCAAGACACCGCAGGTCTCCAGATGCTGGAACAGCGTCTGCAGGTACTC
CTCGCGATGCCGTATATAGTGGGCGGCGTGCTGGGACCGCTCCCAGCACT
TGAAGGTAACCTTGATGTTCGCACGCTCCCAGTCCTCGCGAACGGACTGG
TTGGAGGACGGCGGACCGATGGGATCGTTGTCGGACACGAAGAACAGCGC
CGGGGCCTTGAGCAGCGTGGAGTGGAACATCTGGCTGGAGCGCATGTAGT
GGATGGTGGCCTGGTTGTGGAATGTCTTCAGGTGGTACAGCGTATAGTTG
CGCAGGGCGCTCTGCATTCGCTCGTTCCTCGGGAAGATCGACTTGGGCAC
GCCCACCGGGATCTCGGTGATGTCGGCGGCGCTGTCCCACACCTGGCACA
CGAAGCGGTCCAGAATGCTACCATAGCGATCCATGTCGCGCGACATCTGC
AGCATGATCTCGCCCAGCTGGTAGGCGCCCACGGAGAAGCCATGCATCAC
AATGGGTTCGTACGACTTGTTGTTCTCCAGGAATCGAATAGTCTCGGCGG
CCACCACCTGGGATCCTTTGACCGGCCAGAGTAGCTGCCACGGCGTAATG
TGCACCACCACCACATCGAATCCCATCTCAGTGTAGATCTGGGCATACTT
CTTCAGATGCTTCTGCTTGGCCATCAGCCAGGCCATCATGAGAACCAGTG
GGTTGCCAGTGGGCTTCTTGAAGGCCAGCGTCTTGGGATCCACCTCAACT
TGGGTCTTGGTGCTGGTGTACAGGGTCATGTTCTTGGTAATATCCTGCG
BS04192.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3082-PB | 1170 | l(2)k09913-RB | 338..1170 | 849..17 | 4165 | 100 | Minus |
CG3082-PA | 1170 | l(2)k09913-RA | 338..1170 | 849..17 | 4165 | 100 | Minus |
CG3082-PC | 1170 | l(2)k09913-RC | 338..1170 | 849..17 | 4165 | 100 | Minus |
CG3082-PD | 951 | l(2)k09913-RD | 119..951 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RI | 1259 | CG3082-RI | 107..939 | 849..17 | 4165 | 100 | Minus |
l(2)k09913-RH | 1259 | CG3082-RH | 107..939 | 849..17 | 4165 | 100 | Minus |
l(2)k09913-RG | 1305 | CG3082-RG | 153..985 | 849..17 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071555 | 611..17 | 2975 | 100 | Minus |
2R | 25286936 | 2R | 23070647..23070900 | 849..596 | 1225 | 98.8 | Minus |
Blast to na_te.dros performed 2015-02-11 10:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 376..282 | 113 | 60.2 | Minus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 788..731 | 110 | 65.5 | Minus |
BS04192.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:28 Download gff for
BS04192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PB | 338..1170 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:03 Download gff for
BS04192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PD | 119..951 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:09 Download gff for
BS04192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RG | 153..994 | 7..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:04 Download gff for
BS04192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RG | 153..994 | 7..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:04 Download gff for
BS04192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23070965..23071564 | 7..607 | 99 | | Minus |
2R | 23070647..23070888 | 608..849 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:09 Download gff for
BS04192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18958170..18958411 | 608..849 | 100 | -> | Minus |
arm_2R | 18958488..18959087 | 7..607 | 99 | | Minus |
BS04192.5prime Sequence
747 bp (640 high quality bases) assembled on 2005-12-01
> BS04192.5prime
GAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCG
BS04192.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3082-PB | 1170 | l(2)k09913-RB | 1..731 | 17..747 | 3655 | 100 | Plus |
CG3082-PA | 1170 | l(2)k09913-RA | 1..731 | 17..747 | 3655 | 100 | Plus |
CG3082-PC | 1170 | l(2)k09913-RC | 1..731 | 17..747 | 3655 | 100 | Plus |
CG3082-PD | 951 | l(2)k09913-RD | 78..512 | 313..747 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1590 | CG3082-RE | 101..831 | 17..747 | 3655 | 100 | Plus |
l(2)k09913-RC | 1944 | CG3082-RC | 455..1185 | 17..747 | 3655 | 100 | Plus |
l(2)k09913-RA | 1881 | CG3082-RA | 392..1122 | 17..747 | 3655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070607..23070900 | 314..607 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23067946..23068128 | 131..313 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23070961..23071116 | 592..747 | 780 | 100 | Plus |
2R | 25286936 | 2R | 23067727..23067841 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 415..472 | 110 | 65.5 | Plus |
BS04192.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:29 Download gff for
BS04192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PB | 1..731 | 17..747 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:04 Download gff for
BS04192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3082-PC | 1..731 | 17..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:54:18 Download gff for
BS04192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 385..1122 | 9..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:24 Download gff for
BS04192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 385..1122 | 9..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:24 Download gff for
BS04192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23067720..23067841 | 9..131 | 97 | -> | Plus |
2R | 23067947..23068128 | 132..313 | 100 | -> | Plus |
2R | 23070607..23070888 | 314..595 | 100 | -> | Plus |
2R | 23070965..23071116 | 596..747 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:54:18 Download gff for
BS04192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18955243..18955364 | 9..131 | 97 | -> | Plus |
arm_2R | 18955470..18955651 | 132..313 | 100 | -> | Plus |
arm_2R | 18958130..18958411 | 314..595 | 100 | -> | Plus |
arm_2R | 18958488..18958639 | 596..747 | 100 | | Plus |
BS04192.complete Sequence
1202 bp assembled on 2007-10-17
GenBank Submission: FJ634874
> BS04192.complete
GAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
CGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGG
GCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTG
CGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCAT
CCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCC
CGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCC
AACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTT
CAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCACTATATACGGCATCGCG
AGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTTG
GAGGCCATCGGCGTGCCGAAGCGCGCCAAGTTGTAGAAGCTTTCTAGACC
AT
BS04192.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1170 | CG3082-PE | 1..1170 | 17..1186 | 5850 | 100 | Plus |
l(2)k09913-RC | 1170 | CG3082-PC | 1..1170 | 17..1186 | 5850 | 100 | Plus |
l(2)k09913-RA | 1170 | CG3082-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1590 | CG3082-RE | 101..1270 | 17..1186 | 5850 | 100 | Plus |
l(2)k09913-RC | 1944 | CG3082-RC | 455..1624 | 17..1186 | 5850 | 100 | Plus |
l(2)k09913-RA | 1881 | CG3082-RA | 392..1561 | 17..1186 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071555 | 592..1186 | 2975 | 100 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 314..607 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23067946..23068128 | 131..313 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23067727..23067841 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 827..921 | 113 | 60.2 | Plus |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 415..472 | 110 | 65.5 | Plus |
BS04192.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:48 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RC | 1..1170 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:45 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RC | 467..1652 | 9..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:40 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 392..1561 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:44 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RC | 474..1643 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:17 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 392..1561 | 17..1186 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:17 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23067947..23068128 | 132..313 | 100 | -> | Plus |
2R | 23070607..23070888 | 314..595 | 100 | -> | Plus |
2R | 23067727..23067841 | 17..131 | 100 | -> | Plus |
2R | 23070965..23071555 | 596..1186 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:40 Download gff for
BS04192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18955250..18955364 | 17..131 | 100 | -> | Plus |
arm_2R | 18955470..18955651 | 132..313 | 100 | -> | Plus |
arm_2R | 18958130..18958411 | 314..595 | 100 | -> | Plus |
arm_2R | 18958488..18959078 | 596..1186 | 100 | | Plus |
BS04192.pep Sequence
Translation from 16 to 1185
> BS04192.pep
MAAHFFRTAFYATAARKSMSLPFAGRTAATLAVGLSFGAQNSRAAVPYEN
AYADSFFGGCQTQGLLQRIPQTGYIQPPLMRNFSSLQTGHQQQQQPAPNS
AMAPSNNRRYLSSQDITKNMTLYTSTKTQVEVDPKTLAFKKPTGNPLVLM
MAWLMAKQKHLKKYAQIYTEMGFDVVVVHITPWQLLWPVKGSQVVAAETI
RFLENNKSYEPIVMHGFSVGAYQLGEIMLQMSRDMDRYGSILDRFVCQVW
DSAADITEIPVGVPKSIFPRNERMQSALRNYTLYHLKTFHNQATIHYMRS
SQMFHSTLLKAPALFFVSDNDPIGPPSSNQSVREDWERANIKVTFKCWER
SQHAAHYIRHREEYLQTLFQHLETCGVLEAIGVPKRAKL*
BS04192.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-PE | 389 | CG3082-PE | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PC | 389 | CG3082-PC | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PA | 389 | CG3082-PA | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PB | 389 | CG3082-PB | 1..389 | 1..389 | 2044 | 100 | Plus |
l(2)k09913-PF | 388 | CG3082-PF | 1..388 | 1..389 | 2026 | 99.7 | Plus |