Clone BS04192 Report

Search the DGRC for BS04192

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:41
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k09913-RA
Protein status:BS04192.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04192.3prime Sequence

849 bp (769 high quality bases) assembled on 2005-12-01

> BS04192.3prime
ATGGTCTAGAAAGCTTCTACAACTTGGCGCGCTTCGGCACGCCGATGGCC
TCCAAGACACCGCAGGTCTCCAGATGCTGGAACAGCGTCTGCAGGTACTC
CTCGCGATGCCGTATATAGTGGGCGGCGTGCTGGGACCGCTCCCAGCACT
TGAAGGTAACCTTGATGTTCGCACGCTCCCAGTCCTCGCGAACGGACTGG
TTGGAGGACGGCGGACCGATGGGATCGTTGTCGGACACGAAGAACAGCGC
CGGGGCCTTGAGCAGCGTGGAGTGGAACATCTGGCTGGAGCGCATGTAGT
GGATGGTGGCCTGGTTGTGGAATGTCTTCAGGTGGTACAGCGTATAGTTG
CGCAGGGCGCTCTGCATTCGCTCGTTCCTCGGGAAGATCGACTTGGGCAC
GCCCACCGGGATCTCGGTGATGTCGGCGGCGCTGTCCCACACCTGGCACA
CGAAGCGGTCCAGAATGCTACCATAGCGATCCATGTCGCGCGACATCTGC
AGCATGATCTCGCCCAGCTGGTAGGCGCCCACGGAGAAGCCATGCATCAC
AATGGGTTCGTACGACTTGTTGTTCTCCAGGAATCGAATAGTCTCGGCGG
CCACCACCTGGGATCCTTTGACCGGCCAGAGTAGCTGCCACGGCGTAATG
TGCACCACCACCACATCGAATCCCATCTCAGTGTAGATCTGGGCATACTT
CTTCAGATGCTTCTGCTTGGCCATCAGCCAGGCCATCATGAGAACCAGTG
GGTTGCCAGTGGGCTTCTTGAAGGCCAGCGTCTTGGGATCCACCTCAACT
TGGGTCTTGGTGCTGGTGTACAGGGTCATGTTCTTGGTAATATCCTGCG

BS04192.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3082-PB 1170 l(2)k09913-RB 338..1170 849..17 4165 100 Minus
CG3082-PA 1170 l(2)k09913-RA 338..1170 849..17 4165 100 Minus
CG3082-PC 1170 l(2)k09913-RC 338..1170 849..17 4165 100 Minus
CG3082-PD 951 l(2)k09913-RD 119..951 849..17 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RI 1259 CG3082-RI 107..939 849..17 4165 100 Minus
l(2)k09913-RH 1259 CG3082-RH 107..939 849..17 4165 100 Minus
l(2)k09913-RG 1305 CG3082-RG 153..985 849..17 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071555 611..17 2975 100 Minus
2R 25286936 2R 23070647..23070900 849..596 1225 98.8 Minus
Blast to na_te.dros performed 2015-02-11 10:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 376..282 113 60.2 Minus
G5 4856 G5 G5_DM 4856bp 2673..2730 788..731 110 65.5 Minus

BS04192.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:28 Download gff for BS04192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PB 338..1170 17..849 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:03 Download gff for BS04192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PD 119..951 17..849 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:09 Download gff for BS04192.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RG 153..994 7..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:04 Download gff for BS04192.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RG 153..994 7..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:04 Download gff for BS04192.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23070965..23071564 7..607 99   Minus
2R 23070647..23070888 608..849 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:09 Download gff for BS04192.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18958170..18958411 608..849 100 -> Minus
arm_2R 18958488..18959087 7..607 99   Minus

BS04192.5prime Sequence

747 bp (640 high quality bases) assembled on 2005-12-01

> BS04192.5prime
GAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCG

BS04192.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3082-PB 1170 l(2)k09913-RB 1..731 17..747 3655 100 Plus
CG3082-PA 1170 l(2)k09913-RA 1..731 17..747 3655 100 Plus
CG3082-PC 1170 l(2)k09913-RC 1..731 17..747 3655 100 Plus
CG3082-PD 951 l(2)k09913-RD 78..512 313..747 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1590 CG3082-RE 101..831 17..747 3655 100 Plus
l(2)k09913-RC 1944 CG3082-RC 455..1185 17..747 3655 100 Plus
l(2)k09913-RA 1881 CG3082-RA 392..1122 17..747 3655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070607..23070900 314..607 1425 99 Plus
2R 25286936 2R 23067946..23068128 131..313 915 100 Plus
2R 25286936 2R 23070961..23071116 592..747 780 100 Plus
2R 25286936 2R 23067727..23067841 17..131 575 100 Plus
Blast to na_te.dros performed 2015-02-10 22:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2673..2730 415..472 110 65.5 Plus

BS04192.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:29 Download gff for BS04192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PB 1..731 17..747 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:04 Download gff for BS04192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3082-PC 1..731 17..747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:54:18 Download gff for BS04192.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 385..1122 9..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:24 Download gff for BS04192.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 385..1122 9..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:24 Download gff for BS04192.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23067720..23067841 9..131 97 -> Plus
2R 23067947..23068128 132..313 100 -> Plus
2R 23070607..23070888 314..595 100 -> Plus
2R 23070965..23071116 596..747 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:54:18 Download gff for BS04192.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18955243..18955364 9..131 97 -> Plus
arm_2R 18955470..18955651 132..313 100 -> Plus
arm_2R 18958130..18958411 314..595 100 -> Plus
arm_2R 18958488..18958639 596..747 100   Plus

BS04192.complete Sequence

1202 bp assembled on 2007-10-17

GenBank Submission: FJ634874

> BS04192.complete
GAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACG
CAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCC
GCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGC
CGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGA
CGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCG
CTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCA
GCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTAT
CCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACC
CAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAA
CCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGA
AGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTG
CACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGT
GGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCA
TTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATG
CTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTT
CGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGTGG
GCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAGCGCCCTG
CGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGGCCACCAT
CCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTCAAGGCCC
CGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCCGTCCTCC
AACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGGTTACCTT
CAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCACTATATACGGCATCGCG
AGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGGTGTCTTG
GAGGCCATCGGCGTGCCGAAGCGCGCCAAGTTGTAGAAGCTTTCTAGACC
AT

BS04192.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1170 CG3082-PE 1..1170 17..1186 5850 100 Plus
l(2)k09913-RC 1170 CG3082-PC 1..1170 17..1186 5850 100 Plus
l(2)k09913-RA 1170 CG3082-PA 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1590 CG3082-RE 101..1270 17..1186 5850 100 Plus
l(2)k09913-RC 1944 CG3082-RC 455..1624 17..1186 5850 100 Plus
l(2)k09913-RA 1881 CG3082-RA 392..1561 17..1186 5850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071555 592..1186 2975 100 Plus
2R 25286936 2R 23070607..23070900 314..607 1425 99 Plus
2R 25286936 2R 23067946..23068128 131..313 915 100 Plus
2R 25286936 2R 23067727..23067841 17..131 575 100 Plus
Blast to na_te.dros performed 2014-11-27 16:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 827..921 113 60.2 Plus
G5 4856 G5 G5_DM 4856bp 2673..2730 415..472 110 65.5 Plus

BS04192.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:48 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1170 17..1186 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:45 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 467..1652 9..1196 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:40 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 392..1561 17..1186 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:44 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 474..1643 17..1186 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:17 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 392..1561 17..1186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:17 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23067947..23068128 132..313 100 -> Plus
2R 23070607..23070888 314..595 100 -> Plus
2R 23067727..23067841 17..131 100 -> Plus
2R 23070965..23071555 596..1186 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:40 Download gff for BS04192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18955250..18955364 17..131 100 -> Plus
arm_2R 18955470..18955651 132..313 100 -> Plus
arm_2R 18958130..18958411 314..595 100 -> Plus
arm_2R 18958488..18959078 596..1186 100   Plus

BS04192.pep Sequence

Translation from 16 to 1185

> BS04192.pep
MAAHFFRTAFYATAARKSMSLPFAGRTAATLAVGLSFGAQNSRAAVPYEN
AYADSFFGGCQTQGLLQRIPQTGYIQPPLMRNFSSLQTGHQQQQQPAPNS
AMAPSNNRRYLSSQDITKNMTLYTSTKTQVEVDPKTLAFKKPTGNPLVLM
MAWLMAKQKHLKKYAQIYTEMGFDVVVVHITPWQLLWPVKGSQVVAAETI
RFLENNKSYEPIVMHGFSVGAYQLGEIMLQMSRDMDRYGSILDRFVCQVW
DSAADITEIPVGVPKSIFPRNERMQSALRNYTLYHLKTFHNQATIHYMRS
SQMFHSTLLKAPALFFVSDNDPIGPPSSNQSVREDWERANIKVTFKCWER
SQHAAHYIRHREEYLQTLFQHLETCGVLEAIGVPKRAKL*

BS04192.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-PE 389 CG3082-PE 1..389 1..389 2044 100 Plus
l(2)k09913-PC 389 CG3082-PC 1..389 1..389 2044 100 Plus
l(2)k09913-PA 389 CG3082-PA 1..389 1..389 2044 100 Plus
l(2)k09913-PB 389 CG3082-PB 1..389 1..389 2044 100 Plus
l(2)k09913-PF 388 CG3082-PF 1..388 1..389 2026 99.7 Plus