Clone Sequence Records
BS04205.3prime Sequence
876 bp (867 high quality bases) assembled on 2005-12-01
> BS04205.3prime
ATGGTCTAGAAAGCTTTCACAACACGAACCTGGGATTAAGCTGCTGATAT
GGCGTCAGATCTTTGGTGATCGAGAATAGCGCCCCGTCGCGCACCATCTT
GCACATGAGTGCGCCCAGATTCTTGGCATCGTCGATCCCCGAGTGGGCCT
TGCCCTCGAATGCCAGACCCACGTGCGACAGGGCATCCGTGAAGTTGCAC
GGACGGTACTTGTACCACGACCGATAAATGGCCCGCACGTCGATCCACTG
ATTAAAGTAGGCCGGCTTGCGTATCCCTTTGCGGCTGCACTCCTTCGCCA
AGCAGATGCCGAAGTCCCAGTCCGTCCAGGTGACGAATGCACAGTTGCCC
AGTATGTTTGACTTGTTCATCTTGGGCAAGGTAAGGTTGCGGGCTCGCAT
CTCATTGCGCAGCCATTCGTTAAACATCACGATCGCCGTCCGCAGCGGCA
TTCCGCTGTCCACAGTCTTCTGCTGGATGCCCGTCAGCTCCGTGCAGTAG
GCGCTCAAGCGCGGCGACTCGAAGGGAAGGATGTACTGGTGGAATTCCGC
CTCGATCTTTCCTGTCTTAAGGTTAACAAGCACTGCTGGGAATTCAATTA
TCTCCGCTTCTCGCCACTCTGGCGGAGCCTGCTTTTCCCAGCAGGTTGCC
TCAAAGTCCACGGCAATCACATATGAGTAGGGTTGCATGGCTAGACGCTT
GGACTTCCTTGACTTCTTGCTTTTGGCGGGCACTGAGTTGGCCTCTGTGA
CTTCGTCCTCGTTGAACGACTCCTCGGGATCGTTATTTGGATCTGGGCGA
GCTCCGTCGACGTATATGGTATCGATCAGGCCCAGTTGCCTTGCTAGTTT
TATCAAGGCCATGTCGACTGATAACT
BS04205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6393-PA | 846 | CG6393-RA | 1..846 | 862..17 | 4230 | 100 | Minus |
CG6393-PD | 672 | CG6393-RD | 1..672 | 688..17 | 3360 | 100 | Minus |
CG6393-PC | 672 | CG6393-RC | 1..672 | 688..17 | 3360 | 100 | Minus |
CG6393-PB | 672 | CG6393-RB | 1..672 | 688..17 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1455 | 862..17 | 4230 | 100 | Minus |
Snp-RF | 1419 | CG44248-RF | 151..975 | 841..17 | 4125 | 100 | Minus |
Snp-RG | 1667 | CG44248-RG | 401..1223 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069313 | 595..17 | 2895 | 100 | Minus |
2R | 25286936 | 2R | 22068425..22068671 | 841..595 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:04:44 has no hits.
BS04205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:35 Download gff for
BS04205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..846 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:12 Download gff for
BS04205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..846 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:23 Download gff for
BS04205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1458 | 11..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:51 Download gff for
BS04205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1458 | 11..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:51 Download gff for
BS04205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22068427..22068671 | 595..839 | 100 | -> | Minus |
2R | 22068736..22069316 | 11..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:23 Download gff for
BS04205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17955932..17956176 | 595..839 | 100 | -> | Minus |
arm_2R | 17956241..17956821 | 11..594 | 99 | | Minus |
BS04205.5prime Sequence
856 bp (797 high quality bases) assembled on 2005-11-29
> BS04205.5prime
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTG
BS04205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6393-PA | 846 | CG6393-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
CG6393-PD | 672 | CG6393-RD | 1..666 | 191..856 | 3330 | 100 | Plus |
CG6393-PC | 672 | CG6393-RC | 1..666 | 191..856 | 3330 | 100 | Plus |
CG6393-PB | 672 | CG6393-RB | 1..666 | 191..856 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1449 | 17..856 | 4200 | 100 | Plus |
Snp-RF | 1419 | CG44248-RF | 151..969 | 38..856 | 4095 | 100 | Plus |
Snp-RG | 1667 | CG44248-RG | 401..1217 | 40..856 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069307 | 284..856 | 2865 | 100 | Plus |
2R | 25286936 | 2R | 22068425..22068671 | 38..284 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:17:56 has no hits.
BS04205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:36 Download gff for
BS04205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:13 Download gff for
BS04205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:00 Download gff for
BS04205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1449 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:50 Download gff for
BS04205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1449 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:50 Download gff for
BS04205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22068427..22068671 | 40..284 | 100 | -> | Plus |
2R | 22068736..22069307 | 285..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:00 Download gff for
BS04205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17955932..17956176 | 40..284 | 100 | -> | Plus |
arm_2R | 17956241..17956812 | 285..856 | 100 | | Plus |
BS04205.complete Sequence
878 bp (878 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634875
> BS04205.complete
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTGTTGTGAAAGCTTTCTAGACCAT
BS04205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 846 | CG44248-PD | 1..846 | 17..862 | 4230 | 100 | Plus |
Snp-RG | 672 | CG44248-PG | 1..672 | 191..862 | 3360 | 100 | Plus |
Snp-RF | 672 | CG44248-PF | 1..672 | 191..862 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1455 | 17..862 | 4230 | 100 | Plus |
Snp-RF | 1419 | CG44248-RF | 151..975 | 38..862 | 4125 | 100 | Plus |
Snp-RG | 1667 | CG44248-RG | 401..1223 | 40..862 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069313 | 284..862 | 2895 | 100 | Plus |
2R | 25286936 | 2R | 22068425..22068671 | 38..284 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:57:33 has no hits.
BS04205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:14 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42257-RD | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:45 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42257-RD | 602..1455 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:51:15 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 610..1454 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:14 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42257-RD | 602..1455 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:10 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 610..1454 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:10 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22061559..22061581 | 17..39 | 100 | -> | Plus |
2R | 22068427..22068671 | 40..284 | 100 | -> | Plus |
2R | 22068736..22069312 | 285..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:51:15 Download gff for
BS04205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17949064..17949086 | 17..39 | 100 | -> | Plus |
arm_2R | 17955932..17956176 | 40..284 | 100 | -> | Plus |
arm_2R | 17956241..17956817 | 285..861 | 100 | | Plus |
BS04205.pep Sequence
Translation from 16 to 861
> BS04205.pep
MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK
SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT
GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW
LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP
AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG
ALMCKMVRDGALFSITKDLTPYQQLNPRFVL*
BS04205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-PD | 281 | CG44248-PD | 1..281 | 1..281 | 1497 | 100 | Plus |
Snp-PG | 223 | CG44248-PG | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PF | 223 | CG44248-PF | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PE | 223 | CG44248-PE | 1..223 | 59..281 | 1207 | 100 | Plus |