Clone BS04205 Report

Search the DGRC for BS04205

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptSnp-RD
Protein status:BS04205.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04205.3prime Sequence

876 bp (867 high quality bases) assembled on 2005-12-01

> BS04205.3prime
ATGGTCTAGAAAGCTTTCACAACACGAACCTGGGATTAAGCTGCTGATAT
GGCGTCAGATCTTTGGTGATCGAGAATAGCGCCCCGTCGCGCACCATCTT
GCACATGAGTGCGCCCAGATTCTTGGCATCGTCGATCCCCGAGTGGGCCT
TGCCCTCGAATGCCAGACCCACGTGCGACAGGGCATCCGTGAAGTTGCAC
GGACGGTACTTGTACCACGACCGATAAATGGCCCGCACGTCGATCCACTG
ATTAAAGTAGGCCGGCTTGCGTATCCCTTTGCGGCTGCACTCCTTCGCCA
AGCAGATGCCGAAGTCCCAGTCCGTCCAGGTGACGAATGCACAGTTGCCC
AGTATGTTTGACTTGTTCATCTTGGGCAAGGTAAGGTTGCGGGCTCGCAT
CTCATTGCGCAGCCATTCGTTAAACATCACGATCGCCGTCCGCAGCGGCA
TTCCGCTGTCCACAGTCTTCTGCTGGATGCCCGTCAGCTCCGTGCAGTAG
GCGCTCAAGCGCGGCGACTCGAAGGGAAGGATGTACTGGTGGAATTCCGC
CTCGATCTTTCCTGTCTTAAGGTTAACAAGCACTGCTGGGAATTCAATTA
TCTCCGCTTCTCGCCACTCTGGCGGAGCCTGCTTTTCCCAGCAGGTTGCC
TCAAAGTCCACGGCAATCACATATGAGTAGGGTTGCATGGCTAGACGCTT
GGACTTCCTTGACTTCTTGCTTTTGGCGGGCACTGAGTTGGCCTCTGTGA
CTTCGTCCTCGTTGAACGACTCCTCGGGATCGTTATTTGGATCTGGGCGA
GCTCCGTCGACGTATATGGTATCGATCAGGCCCAGTTGCCTTGCTAGTTT
TATCAAGGCCATGTCGACTGATAACT

BS04205.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6393-PA 846 CG6393-RA 1..846 862..17 4230 100 Minus
CG6393-PD 672 CG6393-RD 1..672 688..17 3360 100 Minus
CG6393-PC 672 CG6393-RC 1..672 688..17 3360 100 Minus
CG6393-PB 672 CG6393-RB 1..672 688..17 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1455 862..17 4230 100 Minus
Snp-RF 1419 CG44248-RF 151..975 841..17 4125 100 Minus
Snp-RG 1667 CG44248-RG 401..1223 839..17 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069313 595..17 2895 100 Minus
2R 25286936 2R 22068425..22068671 841..595 1235 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:04:44 has no hits.

BS04205.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:35 Download gff for BS04205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..846 17..862 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:12 Download gff for BS04205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..846 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:23 Download gff for BS04205.3prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1458 11..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:51 Download gff for BS04205.3prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1458 11..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:51 Download gff for BS04205.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22068427..22068671 595..839 100 -> Minus
2R 22068736..22069316 11..594 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:23 Download gff for BS04205.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17955932..17956176 595..839 100 -> Minus
arm_2R 17956241..17956821 11..594 99   Minus

BS04205.5prime Sequence

856 bp (797 high quality bases) assembled on 2005-11-29

> BS04205.5prime
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTG

BS04205.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6393-PA 846 CG6393-RA 1..840 17..856 4200 100 Plus
CG6393-PD 672 CG6393-RD 1..666 191..856 3330 100 Plus
CG6393-PC 672 CG6393-RC 1..666 191..856 3330 100 Plus
CG6393-PB 672 CG6393-RB 1..666 191..856 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1449 17..856 4200 100 Plus
Snp-RF 1419 CG44248-RF 151..969 38..856 4095 100 Plus
Snp-RG 1667 CG44248-RG 401..1217 40..856 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069307 284..856 2865 100 Plus
2R 25286936 2R 22068425..22068671 38..284 1235 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:17:56 has no hits.

BS04205.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:36 Download gff for BS04205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:13 Download gff for BS04205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:00 Download gff for BS04205.5prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1449 9..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:50 Download gff for BS04205.5prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1449 9..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:50 Download gff for BS04205.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22068427..22068671 40..284 100 -> Plus
2R 22068736..22069307 285..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:00 Download gff for BS04205.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17955932..17956176 40..284 100 -> Plus
arm_2R 17956241..17956812 285..856 100   Plus

BS04205.complete Sequence

878 bp (878 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634875

> BS04205.complete
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTGTTGTGAAAGCTTTCTAGACCAT

BS04205.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 846 CG44248-PD 1..846 17..862 4230 100 Plus
Snp-RG 672 CG44248-PG 1..672 191..862 3360 100 Plus
Snp-RF 672 CG44248-PF 1..672 191..862 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1455 17..862 4230 100 Plus
Snp-RF 1419 CG44248-RF 151..975 38..862 4125 100 Plus
Snp-RG 1667 CG44248-RG 401..1223 40..862 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069313 284..862 2895 100 Plus
2R 25286936 2R 22068425..22068671 38..284 1235 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:57:33 has no hits.

BS04205.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:14 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:34:45 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 602..1455 9..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:51:15 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 610..1454 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:14 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 602..1455 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:10 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 610..1454 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:10 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22061559..22061581 17..39 100 -> Plus
2R 22068427..22068671 40..284 100 -> Plus
2R 22068736..22069312 285..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:51:15 Download gff for BS04205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17949064..17949086 17..39 100 -> Plus
arm_2R 17955932..17956176 40..284 100 -> Plus
arm_2R 17956241..17956817 285..861 100   Plus

BS04205.pep Sequence

Translation from 16 to 861

> BS04205.pep
MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK
SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT
GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW
LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP
AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG
ALMCKMVRDGALFSITKDLTPYQQLNPRFVL*

BS04205.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-PD 281 CG44248-PD 1..281 1..281 1497 100 Plus
Snp-PG 223 CG44248-PG 1..223 59..281 1207 100 Plus
Snp-PF 223 CG44248-PF 1..223 59..281 1207 100 Plus
Snp-PE 223 CG44248-PE 1..223 59..281 1207 100 Plus