Clone Sequence Records
BS04206.3prime Sequence
492 bp (491 high quality bases) assembled on 2005-12-01
> BS04206.3prime
ATGGTCTAGAAAGCTTCTAAGAGCGTGGAATGAGCCAAGATCCAAGTCCT
AATAGTGCGGTGAGCAGGGTTAAACAGACACCATAGCCTTGTCTTGAAGG
AGCGCCACTAATGACAAAGTAGTTGCACCGATCTCCCTTGCAGCACTCGT
TGCACGCCCAATCCTCGTACCAGATGTGGGTGCAGTACAGCTGCATATAG
CGCTTCCTCTTGGACTGGCACTGCTCCTTGGTCATGCACCTCTTGGACAC
GTAGTATTGCTTAAGAGCACCCTCCGAGAAGTACGGCTGGGATCCCCAGC
GGATCTCCGTTCCGCAGACGTTTTCAAAGGGCTCGCAGGTCTTGATGGTG
TTCAGGCACTTCTCCGTGTTGCCCGTCTGGTTGGAGCAGACATAGCACTC
CAGACCGGCCACGAAATTTACTTGCGAACACAAGTAAACAGCGGCGACTA
GCACCACAGCTATCTCCCACGATTTCATGTCGACTGATAACT
BS04206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2813-PA | 462 | CG2813-RA | 1..462 | 478..17 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..534 | 478..17 | 2310 | 100 | Minus |
cold-RA | 1093 | CG2813-RA | 134..595 | 478..17 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 422..110 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 575144..575236 | 109..17 | 465 | 100 | Minus |
2L | 23513712 | 2L | 574641..574698 | 478..421 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:39:35 has no hits.
BS04206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:37 Download gff for
BS04206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:14 Download gff for
BS04206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:15 Download gff for
BS04206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..598 | 12..486 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:21 Download gff for
BS04206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..598 | 12..486 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:21 Download gff for
BS04206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574631..574698 | 421..486 | 94 | -> | Minus |
2L | 574780..575090 | 110..420 | 100 | -> | Minus |
2L | 575144..575239 | 12..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:15 Download gff for
BS04206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574631..574698 | 421..486 | 94 | -> | Minus |
arm_2L | 574780..575090 | 110..420 | 100 | -> | Minus |
arm_2L | 575144..575239 | 12..109 | 96 | | Minus |
BS04206.5prime Sequence
492 bp (491 high quality bases) assembled on 2005-11-29
> BS04206.5prime
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTTAGAAGCTTTCTAGACC
BS04206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2813-PA | 462 | CG2813-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..534 | 17..478 | 2310 | 100 | Plus |
cold-RA | 1093 | CG2813-RA | 134..595 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 73..385 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 575144..575236 | 386..478 | 465 | 100 | Plus |
2L | 23513712 | 2L | 574641..574698 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:30:56 has no hits.
BS04206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:38 Download gff for
BS04206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:16 Download gff for
BS04206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:22 Download gff for
BS04206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..598 | 9..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:37 Download gff for
BS04206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..598 | 9..483 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:37 Download gff for
BS04206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574631..574698 | 9..74 | 94 | -> | Plus |
2L | 574780..575090 | 75..385 | 100 | -> | Plus |
2L | 575144..575239 | 386..483 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:22 Download gff for
BS04206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574631..574698 | 9..74 | 94 | -> | Plus |
arm_2L | 574780..575090 | 75..385 | 100 | -> | Plus |
arm_2L | 575144..575239 | 386..483 | 96 | | Plus |
BS04206.complete Sequence
494 bp (494 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634876
> BS04206.complete
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTTAGAAGCTTTCTAGACCAT
BS04206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 462 | CG2813-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
cold-RA | 462 | CG2813-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..534 | 17..478 | 2310 | 100 | Plus |
cold-RA | 1093 | CG2813-RA | 134..595 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 73..385 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 575144..575236 | 386..478 | 465 | 100 | Plus |
2L | 23513712 | 2L | 574641..574698 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:04 has no hits.
BS04206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:32 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-RA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:16 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-RA | 119..593 | 9..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:31 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 134..595 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:32 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-RA | 119..593 | 9..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:57 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 134..595 | 17..478 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:57 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574641..574698 | 17..74 | 100 | -> | Plus |
2L | 574780..575090 | 75..385 | 100 | -> | Plus |
2L | 575144..575236 | 386..478 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:31 Download gff for
BS04206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574641..574698 | 17..74 | 100 | -> | Plus |
arm_2L | 574780..575090 | 75..385 | 100 | -> | Plus |
arm_2L | 575144..575236 | 386..478 | 100 | | Plus |
BS04206.pep Sequence
Translation from 16 to 477
> BS04206.pep
MKSWEIAVVLVAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEP
FENVCGTEIRWGSQPYFSEGALKQYYVSKRCMTKEQCQSKRKRYMQLYCT
HIWYEDWACNECCKGDRCNYFVISGAPSRQGYGVCLTLLTALLGLGSWLI
PRS*
BS04206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-PB | 153 | CG2813-PB | 1..153 | 1..153 | 857 | 100 | Plus |
cold-PA | 153 | CG2813-PA | 1..153 | 1..153 | 857 | 100 | Plus |