Clone BS04206 Report

Search the DGRC for BS04206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:42
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptcold-RA
Protein status:BS04206.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04206.3prime Sequence

492 bp (491 high quality bases) assembled on 2005-12-01

> BS04206.3prime
ATGGTCTAGAAAGCTTCTAAGAGCGTGGAATGAGCCAAGATCCAAGTCCT
AATAGTGCGGTGAGCAGGGTTAAACAGACACCATAGCCTTGTCTTGAAGG
AGCGCCACTAATGACAAAGTAGTTGCACCGATCTCCCTTGCAGCACTCGT
TGCACGCCCAATCCTCGTACCAGATGTGGGTGCAGTACAGCTGCATATAG
CGCTTCCTCTTGGACTGGCACTGCTCCTTGGTCATGCACCTCTTGGACAC
GTAGTATTGCTTAAGAGCACCCTCCGAGAAGTACGGCTGGGATCCCCAGC
GGATCTCCGTTCCGCAGACGTTTTCAAAGGGCTCGCAGGTCTTGATGGTG
TTCAGGCACTTCTCCGTGTTGCCCGTCTGGTTGGAGCAGACATAGCACTC
CAGACCGGCCACGAAATTTACTTGCGAACACAAGTAAACAGCGGCGACTA
GCACCACAGCTATCTCCCACGATTTCATGTCGACTGATAACT

BS04206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2813-PA 462 CG2813-RA 1..462 478..17 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..534 478..17 2310 100 Minus
cold-RA 1093 CG2813-RA 134..595 478..17 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 422..110 1565 100 Minus
2L 23513712 2L 575144..575236 109..17 465 100 Minus
2L 23513712 2L 574641..574698 478..421 290 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:39:35 has no hits.

BS04206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:37 Download gff for BS04206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:14 Download gff for BS04206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:15 Download gff for BS04206.3prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..598 12..486 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:21 Download gff for BS04206.3prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..598 12..486 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:21 Download gff for BS04206.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 574631..574698 421..486 94 -> Minus
2L 574780..575090 110..420 100 -> Minus
2L 575144..575239 12..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:15 Download gff for BS04206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574631..574698 421..486 94 -> Minus
arm_2L 574780..575090 110..420 100 -> Minus
arm_2L 575144..575239 12..109 96   Minus

BS04206.5prime Sequence

492 bp (491 high quality bases) assembled on 2005-11-29

> BS04206.5prime
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTTAGAAGCTTTCTAGACC

BS04206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2813-PA 462 CG2813-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..534 17..478 2310 100 Plus
cold-RA 1093 CG2813-RA 134..595 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 73..385 1565 100 Plus
2L 23513712 2L 575144..575236 386..478 465 100 Plus
2L 23513712 2L 574641..574698 17..74 290 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:30:56 has no hits.

BS04206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:38 Download gff for BS04206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:16 Download gff for BS04206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:22 Download gff for BS04206.5prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..598 9..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:37 Download gff for BS04206.5prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..598 9..483 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:37 Download gff for BS04206.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 574631..574698 9..74 94 -> Plus
2L 574780..575090 75..385 100 -> Plus
2L 575144..575239 386..483 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:22 Download gff for BS04206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574631..574698 9..74 94 -> Plus
arm_2L 574780..575090 75..385 100 -> Plus
arm_2L 575144..575239 386..483 96   Plus

BS04206.complete Sequence

494 bp (494 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634876

> BS04206.complete
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTTAGAAGCTTTCTAGACCAT

BS04206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 462 CG2813-PB 1..462 17..478 2310 100 Plus
cold-RA 462 CG2813-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..534 17..478 2310 100 Plus
cold-RA 1093 CG2813-RA 134..595 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 73..385 1565 100 Plus
2L 23513712 2L 575144..575236 386..478 465 100 Plus
2L 23513712 2L 574641..574698 17..74 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:42:04 has no hits.

BS04206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:32 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2813-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:16 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2813-RA 119..593 9..483 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:31 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
cold-RA 134..595 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:32 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
CG2813-RA 119..593 9..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:57 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
cold-RA 134..595 17..478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:57 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 574641..574698 17..74 100 -> Plus
2L 574780..575090 75..385 100 -> Plus
2L 575144..575236 386..478 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:31 Download gff for BS04206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574641..574698 17..74 100 -> Plus
arm_2L 574780..575090 75..385 100 -> Plus
arm_2L 575144..575236 386..478 100   Plus

BS04206.pep Sequence

Translation from 16 to 477

> BS04206.pep
MKSWEIAVVLVAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEP
FENVCGTEIRWGSQPYFSEGALKQYYVSKRCMTKEQCQSKRKRYMQLYCT
HIWYEDWACNECCKGDRCNYFVISGAPSRQGYGVCLTLLTALLGLGSWLI
PRS*

BS04206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
cold-PB 153 CG2813-PB 1..153 1..153 857 100 Plus
cold-PA 153 CG2813-PA 1..153 1..153 857 100 Plus