Clone Sequence Records
BS04207.3prime Sequence
961 bp (890 high quality bases) assembled on 2005-12-01
> BS04207.3prime
ATGGTCTAGAAAGCTTCTATTGCTGCAGCTCACTCAAGTCTGGAATGTTG
CAAGCGTAATCGTCGTTTGAGGTGGAGCTGGAGTCGTTGGTTAGCTCAAA
GCTGTTATCACCACTGGTGCCAGTAACCGTTGTCAGGCTGGAGTCATTGT
TTGAGCTCTGCTGCTCTGAGTTACTCAGATTTGGCAAGAAGGCATCTGGG
TACTCTTCCTCTCCATCCTCCTCACCATCGTTATCATCGTCATCATCTTT
GCTCAAGCTGCTGGAGCTGCTTCTGCTCTCAGGACGCAAGGTCTCCCTGC
TGCCTTTACTTATATTCAAGGCGCTTATCATTGGCAAGTTGTTTGAGCTC
GCCGTTGATGTGGTAGCCGTTGAAGCTTTCGCTGGAGCGTGATTTGGTCG
AGAGTTTACATCTCCAGAATTATCAATTAAAAGAGTGATTCGCGGAATGT
TAGGCGGATCCGTTGAGCTAGTTCTGTTGCTTGGGTTGTCCGACACAGTT
GCCCGCAAATCACCAGAGTTCGAAATGAGTATAGACAGATCGGGGATGTT
CATCGGTCGTGGCTGCAGCACTGGCTCCTGAATTTGTTCGCTGGGATTGA
GAATTGTCAGATTGGGCACATTCGGGATGGTCGTCGACGTAGTTCCGGTG
CCTGTCAATGTTGCAAAGTTGGAGTTAGTAGTACTCCTTTGCTGTCGTCG
AGGTGGCGCTATGGGAGGGGTGTTTCCTGACGGCTGGGGCACACTCTTGT
CCCGCCTCACAATGTCTTTTTCAAAGTTGTCCAGGTTCAGGCCAACGCTA
CCTTGAGCGTCTGCCCCAAGAGTGGCAGTGCTTGACTGGTATTTGAGGCT
CAGCCCCTCGTTGTCCACTTCCATTTCCTCTTCCAGCAGCTCAAGGCTTA
TGAGCGCACCGGGACCGTCAACAGGCCGGGGCAGGGGTGGACTCATTTAA
GAAGTCTAGTG
BS04207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10520-PA | 1389 | tub-RA | 476..1389 | 930..17 | 4570 | 100 | Minus |
| CG10520-PA | 1389 | tub-RA | 446..478 | 961..929 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 634..1578 | 961..16 | 4690 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4388458..4389385 | 944..16 | 4595 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:25:47 has no hits.
BS04207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:39 Download gff for
BS04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-PA | 446..1389 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:18 Download gff for
BS04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-PA | 446..1389 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:27 Download gff for
BS04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 634..1578 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:13 Download gff for
BS04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 634..1578 | 16..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:13 Download gff for
BS04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4388448..4389390 | 13..956 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:27 Download gff for
BS04207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 214170..215112 | 13..956 | 99 | -> | Minus |
BS04207.5prime Sequence
908 bp (786 high quality bases) assembled on 2005-11-29
> BS04207.5prime
GAAGTTATCAGTCGACATGGCGTATGGCTGGAACGGATGCGGAATGGGCG
TGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGTATTCT
CGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACCGGCTTGC
CAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCGATCATAC
CCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGAATTTT
CCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTGTTCCA
GATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTCGCAGA
TGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGCCCACG
GTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGTGCGGC
AGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCGGCCTG
TTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGGAAATG
GAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACTGCCAC
TCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAACTTTG
AAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAGGAAAC
ACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTACTAACTC
CAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACCATCCCGA
ATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCAGGAGCCA
GTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATACTCATTTC
CGACTCTG
BS04207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10520-PA | 1389 | tub-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 188..1080 | 16..908 | 4435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4387929..4388392 | 16..479 | 2320 | 100 | Plus |
| 3R | 32079331 | 3R | 4388458..4388887 | 479..908 | 2120 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:30:31 has no hits.
BS04207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:42:40 Download gff for
BS04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:02:19 Download gff for
BS04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:18 Download gff for
BS04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..1080 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:20 Download gff for
BS04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..1080 | 9..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:20 Download gff for
BS04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4387926..4388396 | 9..481 | 98 | -> | Plus |
| 3R | 4388461..4388887 | 482..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:18 Download gff for
BS04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 213648..214118 | 9..481 | 98 | -> | Plus |
| arm_3R | 214183..214609 | 482..908 | 99 | | Plus |
BS04207.complete Sequence
1421 bp (1421 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634877
> BS04207.complete
GAAGTTATCAGTCGACATGGCGTATGGCTGGAACGGATGCGGAATGGGCG
TGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGTATTCT
CGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACCGGCTTGC
CAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCGATCATAC
CCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGAATTTT
CCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTGTTCCA
GATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTCGCAGA
TGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGCCCACG
GTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGTGCGGC
AGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCGGCCTG
TTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGGAAATG
GAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACTGCCAC
TCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAACTTTG
AAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAGGAAAC
ACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTACTAACTC
CAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACCATCCCGA
ATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCAGGAGCCA
GTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATACTCATTTC
GAACTCTGGTGATTTGCGGGCAACTGTGTCGGACAACCCAAGCAACAGAA
CTAGCTCAACGGATCCGCCTAACATTCCGCGAATCACTCTTTTAATTGAT
AATTCTGGAGATGTAAACTCTCGACCAAATCACGCTCCAGCGAAAGCTTC
AACGGCTACCACATCAACGGCGAGCTCAAACAACTTGCCAATGATAAGCG
CCTTGAATATAAGTAAAGGCAGCAGGGAGACCTTGCGTCCTGAGAGCAGA
AGCAGCTCCAGCAGCTTGAGCAAAGATGATGACGATGATAACGATGGTGA
GGAGGATGGAGAGGAAGAGTACCCAGATGCCTTCTTGCCAAATCTGAGTA
ACTCAGAGCAGCAGAGCTCAAACAATGACTCCAGCCTGACAACGGTTACT
GGCACCAGTGGTGATAACAGCTTTGAGCTAACCAACGACTCCAGCTCCAC
CTCAAACGACGATTACGCTTGCAACATTCCAGACTTGAGTGAGCTGCAGC
AATAGAAGCTTTCTAGACCAT
BS04207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 1389 | CG10520-PC | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 188..1578 | 16..1406 | 6955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4388458..4389385 | 479..1406 | 4640 | 100 | Plus |
| 3R | 32079331 | 3R | 4387929..4388392 | 16..479 | 2320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:15:31 has no hits.
BS04207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:00 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RB | 1..1389 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:56 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RB | 522..1910 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:43 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 189..1577 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:01 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RB | 518..1911 | 9..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:08 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 189..1577 | 17..1405 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:08 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4387930..4388396 | 17..481 | 99 | -> | Plus |
| 3R | 4388461..4389384 | 482..1405 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:43 Download gff for
BS04207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 213652..214118 | 17..481 | 99 | -> | Plus |
| arm_3R | 214183..215106 | 482..1405 | 100 | | Plus |
BS04207.pep Sequence
Translation from 16 to 1404
> BS04207.pep
MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDE
NSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAA
NRLPPDQSKSQMMIDEWKTSGKLNERPTVGVLLQLLVQAELFSAADFVAL
DFLNESTPARPVDGPGALISLELLEEEMEVDNEGLSLKYQSSTATLGADA
QGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPRRQQRSTTNSNFATL
TGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILISNSGDL
RATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTS
TASSNNLPMISALNISKGSRETLRPESRSSSSSLSKDDDDDNDGEEDGEE
EYPDAFLPNLSNSEQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDY
ACNIPDLSELQQ*
BS04207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-PC | 462 | CG10520-PC | 1..462 | 1..462 | 2370 | 100 | Plus |
